-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul S.F., Madden T.L., Scvhäffer A.A., Zhang J., Zhang Z., Miller W., and Lipman D.J. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25 (1997) 3389-3402
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Scvhäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
0001326017
-
Study of bacteriophage infecting the myxobacterium Chondrococcus columnaris
-
Anacker R.L., and Ordal E.J. Study of bacteriophage infecting the myxobacterium Chondrococcus columnaris. J. Bacteriol. 70 (1955) 738-741
-
(1955)
J. Bacteriol.
, vol.70
, pp. 738-741
-
-
Anacker, R.L.1
Ordal, E.J.2
-
3
-
-
0004270170
-
-
Ausubel F.M., Brent R., Kingston R.E., Moore D.D., Seidman J.D., Smith J.A., and Struhl K. (Eds), Wiley, New York
-
In: Ausubel F.M., Brent R., Kingston R.E., Moore D.D., Seidman J.D., Smith J.A., and Struhl K. (Eds). Current Protocols in Molecular Biology vol. 2 (1989), Wiley, New York
-
(1989)
Current Protocols in Molecular Biology
, vol.2
-
-
-
4
-
-
0037290240
-
Rapid detection of columnaris disease in channel catfish (Ictalaruspunctatus) with anew species-specific 16S-rRNA gene-based PCR primer for Flavobacterium columnare
-
Bader J.A., Shoemaker C.A., and Klesius P.H. Rapid detection of columnaris disease in channel catfish (Ictalaruspunctatus) with anew species-specific 16S-rRNA gene-based PCR primer for Flavobacterium columnare. J. Microbiol. Methods 52 (2003) 209-220
-
(2003)
J. Microbiol. Methods
, vol.52
, pp. 209-220
-
-
Bader, J.A.1
Shoemaker, C.A.2
Klesius, P.H.3
-
5
-
-
33846835510
-
-
Gillespie S.H. (Ed), Humana Press Inc, Totowa, NJ
-
Benedí V.J., and Martínez-Martínez L. Antibiotic Resistance: Methods and Protocols. In: Gillespie S.H. (Ed) (2001), Humana Press Inc, Totowa, NJ 189-197
-
(2001)
Antibiotic Resistance: Methods and Protocols
, pp. 189-197
-
-
Benedí, V.J.1
Martínez-Martínez, L.2
-
7
-
-
0035989637
-
Proposed minimal standards for describing new taxa of the Flavobacteriaceae and emended description of the family
-
Bernardet J.-F., Nakagawa Y., and Holmes B. Proposed minimal standards for describing new taxa of the Flavobacteriaceae and emended description of the family. Int. J. Syst. Evol. Microbiol. 52 (2002) 1049-1070
-
(2002)
Int. J. Syst. Evol. Microbiol.
, vol.52
, pp. 1049-1070
-
-
Bernardet, J.-F.1
Nakagawa, Y.2
Holmes, B.3
-
8
-
-
0030052649
-
Cutting a Gordian knot: emended classification and description of the genus Flavobacterium, emended description of the family Flavobacteriaceae, and proposal of Flavobacterium hydatis nom. nov. (Basonym, Cytophaga aquatilis Strohl and Tait 1978)
-
Bernardet J.-F., Segers P., Vancanneyt M., Berthe E., Kersters K., and Vandamme P. Cutting a Gordian knot: emended classification and description of the genus Flavobacterium, emended description of the family Flavobacteriaceae, and proposal of Flavobacterium hydatis nom. nov. (Basonym, Cytophaga aquatilis Strohl and Tait 1978). Int. J. Syst. Bacteriol. 46 (1996) 128-148
-
(1996)
Int. J. Syst. Bacteriol.
, vol.46
, pp. 128-148
-
-
Bernardet, J.-F.1
Segers, P.2
Vancanneyt, M.3
Berthe, E.4
Kersters, K.5
Vandamme, P.6
-
9
-
-
0018800089
-
A rapid alkaline extraction procedure for screening recombinant plasmid DNA
-
Birnboim H.C., and Doly J. A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucleic Acids Res. 7 (1979) 1513-1523
-
(1979)
Nucleic Acids Res.
, vol.7
, pp. 1513-1523
-
-
Birnboim, H.C.1
Doly, J.2
-
10
-
-
33846800529
-
-
J. Bohnert, B. Huebner, Y Neitzel, K. Botzenhart, U. Szezwyk, In situ identification of bacteria from a karstic aquifer using rRNA-targeted oligonucleotide probes, GenBank sequence AF336355 (2001).
-
-
-
-
11
-
-
33645947318
-
16S rRNA gene sequencing versus the API 20 NE system and the VITEK 2ID-GNB card for identification of nonfermenting Gram-negative bacteria in the clinical laboratory
-
Bosshard P.P., Zbinden R., Abels S., Böddinghaus B., Altwegg M., and Böttger E.C. 16S rRNA gene sequencing versus the API 20 NE system and the VITEK 2ID-GNB card for identification of nonfermenting Gram-negative bacteria in the clinical laboratory. J. Clin. Microbiol. 44 (2006) 1359-1366
-
(2006)
J. Clin. Microbiol.
, vol.44
, pp. 1359-1366
-
-
Bosshard, P.P.1
Zbinden, R.2
Abels, S.3
Böddinghaus, B.4
Altwegg, M.5
Böttger, E.C.6
-
12
-
-
4344604282
-
Improved growth of Flavobacterium psychrophilum using a new culture medium
-
Cepeda C., García-Márquez S., and Santos Y. Improved growth of Flavobacterium psychrophilum using a new culture medium. Aquaculture 238 (2004) 75-82
-
(2004)
Aquaculture
, vol.238
, pp. 75-82
-
-
Cepeda, C.1
García-Márquez, S.2
Santos, Y.3
-
13
-
-
0032581316
-
Fingerprinting of Flavobacterium psychrophilum isolates by ribotyping and plasmid profiling
-
Chakroun C., Grimont E., Urdaci M.C., and Bernardet J.-F. Fingerprinting of Flavobacterium psychrophilum isolates by ribotyping and plasmid profiling. Dis. Aquat. Org. 33 (1998) 167-177
-
(1998)
Dis. Aquat. Org.
, vol.33
, pp. 167-177
-
-
Chakroun, C.1
Grimont, E.2
Urdaci, M.C.3
Bernardet, J.-F.4
-
14
-
-
0031592251
-
Randomly amplified polymorphic DNA analysis provides rapid differentiation among isolates of the fish pathogen Flavobacterium psychrophilum and among Flavobacterium species
-
Chakroun C., Urdaci M.C., Faure D., Grimont E., and Bernardet J.-F. Randomly amplified polymorphic DNA analysis provides rapid differentiation among isolates of the fish pathogen Flavobacterium psychrophilum and among Flavobacterium species. Dis. Aquat. Org. 31 (1997) 187-196
-
(1997)
Dis. Aquat. Org.
, vol.31
, pp. 187-196
-
-
Chakroun, C.1
Urdaci, M.C.2
Faure, D.3
Grimont, E.4
Bernardet, J.-F.5
-
15
-
-
0036151760
-
Molecular relationship between two groups of the genus Leptospirillum and the finding that Leptospirillum ferriphilum sp. nov. dominates South African commercial biooxidation tanks that operate at 40 °C
-
Coram N.J., and Rawlings D.E. Molecular relationship between two groups of the genus Leptospirillum and the finding that Leptospirillum ferriphilum sp. nov. dominates South African commercial biooxidation tanks that operate at 40 °C. Appl. Environ. Microbiol. 68 (2002) 838-845
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 838-845
-
-
Coram, N.J.1
Rawlings, D.E.2
-
17
-
-
22144478707
-
Genetic diversity of Flavobacterium columnare examined by restriction fragment length polymorphism and sequencing of the 16S ribosomal RNA gene and the 16S-23S rDNA spacer
-
Darwish A.M., and Ismaiel A.A. Genetic diversity of Flavobacterium columnare examined by restriction fragment length polymorphism and sequencing of the 16S ribosomal RNA gene and the 16S-23S rDNA spacer. Mol. Cell. Probes 19 (2005) 267-274
-
(2005)
Mol. Cell. Probes
, vol.19
, pp. 267-274
-
-
Darwish, A.M.1
Ismaiel, A.A.2
-
18
-
-
5644282567
-
Identification of Flavobacterium columnare by a species-specific polymerase chain reaction and renaming of ATCC43622 strain to Flavobacterium johnsoniae
-
Darwish A.M., Ismaiel A.A., Newton J.C., and Tang J. Identification of Flavobacterium columnare by a species-specific polymerase chain reaction and renaming of ATCC43622 strain to Flavobacterium johnsoniae. Mol. Cell. Probes 18 (2004) 421-427
-
(2004)
Mol. Cell. Probes
, vol.18
, pp. 421-427
-
-
Darwish, A.M.1
Ismaiel, A.A.2
Newton, J.C.3
Tang, J.4
-
19
-
-
0033398394
-
Characterisation of the adhesion of Flavobacterium columnare (Flexibacter columnaris) to gill tissue
-
Decostere A., Haesebrouck F., Van Driessche E., Charlier G., and Ducatelle R. Characterisation of the adhesion of Flavobacterium columnare (Flexibacter columnaris) to gill tissue. J. Fish Dis. 22 (1999) 465-474
-
(1999)
J. Fish Dis.
, vol.22
, pp. 465-474
-
-
Decostere, A.1
Haesebrouck, F.2
Van Driessche, E.3
Charlier, G.4
Ducatelle, R.5
-
20
-
-
29944433685
-
Experimental handling stress as infection-facilitating factor for the goldfish ulcerative disease
-
Dror M., Sinyakov M.S., Okun E., Dym M., Sredni B., and Avtalion R.R. Experimental handling stress as infection-facilitating factor for the goldfish ulcerative disease. Vet. Immunol. Immunopathol. 109 (2006) 279-287
-
(2006)
Vet. Immunol. Immunopathol.
, vol.109
, pp. 279-287
-
-
Dror, M.1
Sinyakov, M.S.2
Okun, E.3
Dym, M.4
Sredni, B.5
Avtalion, R.R.6
-
21
-
-
17444393267
-
Isolation and characterisation of strains of Flavobacterium columnare from Brazil
-
Figueiredo H.C.P., Klesius P.H., Arias C.R., Evans J., Shoemaker C.A., Pereira Jr. D.J., and Peixoto M.T.D. Isolation and characterisation of strains of Flavobacterium columnare from Brazil. J. Fish Dis. 28 (2005) 199-204
-
(2005)
J. Fish Dis.
, vol.28
, pp. 199-204
-
-
Figueiredo, H.C.P.1
Klesius, P.H.2
Arias, C.R.3
Evans, J.4
Shoemaker, C.A.5
Pereira Jr., D.J.6
Peixoto, M.T.D.7
-
22
-
-
0027085819
-
A partial phylogenetic analysis of the 'Flavobacterium-Bacteroides' phylum: basis for taxonomic restructuring
-
Gherna R., and Woese C.R. A partial phylogenetic analysis of the 'Flavobacterium-Bacteroides' phylum: basis for taxonomic restructuring. Syst. Appl. Microbiol. 15 (1992) 513-521
-
(1992)
Syst. Appl. Microbiol.
, vol.15
, pp. 513-521
-
-
Gherna, R.1
Woese, C.R.2
-
23
-
-
0030220506
-
Applicability of combined amplified ribosomal DNA restriction analysis (ARDRA) patterns in bacterial phylogeny and taxonomy
-
Heyndrickx M., Vauterin L., Vandamme P., Kersters K., and De Vos P. Applicability of combined amplified ribosomal DNA restriction analysis (ARDRA) patterns in bacterial phylogeny and taxonomy. J. Microbiol. Methods 26 (1996) 247-259
-
(1996)
J. Microbiol. Methods
, vol.26
, pp. 247-259
-
-
Heyndrickx, M.1
Vauterin, L.2
Vandamme, P.3
Kersters, K.4
De Vos, P.5
-
24
-
-
0842308827
-
Phylogenetic analysis and in situ identification of the intestinal microbial community of rainbow trout (Onchorynchus mykiss, Walbaum)
-
Huber I., Spanggaard B., Appel K.F., Rossen L., Nielsen T., and Gram L. Phylogenetic analysis and in situ identification of the intestinal microbial community of rainbow trout (Onchorynchus mykiss, Walbaum). J. Appl. Microbiol. 96 (2004) 117-132
-
(2004)
J. Appl. Microbiol.
, vol.96
, pp. 117-132
-
-
Huber, I.1
Spanggaard, B.2
Appel, K.F.3
Rossen, L.4
Nielsen, T.5
Gram, L.6
-
25
-
-
0023738045
-
Numerical index of the discriminatory ability of typing systems: an application of Simpson's index of diversity
-
Hunter P.R., and Gaston M.A. Numerical index of the discriminatory ability of typing systems: an application of Simpson's index of diversity. J. Clin. Microbiol. 26 (1988) 2465-2466
-
(1988)
J. Clin. Microbiol.
, vol.26
, pp. 2465-2466
-
-
Hunter, P.R.1
Gaston, M.A.2
-
26
-
-
4444339841
-
Plasmid profiling of Japanese Flavobacterium psychrophilum isolates
-
Izumi S., and Aranishi F. Plasmid profiling of Japanese Flavobacterium psychrophilum isolates. J. Aquat. Anim. Health 16 (2004) 99-103
-
(2004)
J. Aquat. Anim. Health
, vol.16
, pp. 99-103
-
-
Izumi, S.1
Aranishi, F.2
-
27
-
-
0344515550
-
Genotyping of Flavobacterium psychrophilum using PCR-RFLP analysis
-
Izumi S., Aranishi F., and Wakabayashi H. Genotyping of Flavobacterium psychrophilum using PCR-RFLP analysis. Dis. Aquat. Org 56 (2003) 207-214
-
(2003)
Dis. Aquat. Org
, vol.56
, pp. 207-214
-
-
Izumi, S.1
Aranishi, F.2
Wakabayashi, H.3
-
28
-
-
0022342277
-
A numerical taxonomic study of Flavobacterium-Cytophaga strains from dairy sources
-
Jooste P.J., Britz T.J., and De Haast J. A numerical taxonomic study of Flavobacterium-Cytophaga strains from dairy sources. J. Appl. Microbiol. 59 (1985) 311-323
-
(1985)
J. Appl. Microbiol.
, vol.59
, pp. 311-323
-
-
Jooste, P.J.1
Britz, T.J.2
De Haast, J.3
-
29
-
-
0034007752
-
Transposon insertions in the Flavobacterium johnsoniae ftsX gene disrupt gliding motility and cell division
-
Kempf M.J., and McBride M.J. Transposon insertions in the Flavobacterium johnsoniae ftsX gene disrupt gliding motility and cell division. J. Bacteriol. 182 (2000) 1671-1679
-
(2000)
J. Bacteriol.
, vol.182
, pp. 1671-1679
-
-
Kempf, M.J.1
McBride, M.J.2
-
30
-
-
0033815217
-
Comparative studies of Danish Flavobacterium psychrophilum isolates: ribotypes, plasmid profiles, serotypes and virulence
-
Madsen L., and Dalsgaard I. Comparative studies of Danish Flavobacterium psychrophilum isolates: ribotypes, plasmid profiles, serotypes and virulence. J. Fish Dis. 23 (2000) 211-218
-
(2000)
J. Fish Dis.
, vol.23
, pp. 211-218
-
-
Madsen, L.1
Dalsgaard, I.2
-
31
-
-
2642529310
-
Cytophaga-Flavobacterium gliding motility
-
McBride M.J. Cytophaga-Flavobacterium gliding motility. J. Mol. Microbiol. Biotechnol. 7 (2004) 63-71
-
(2004)
J. Mol. Microbiol. Biotechnol.
, vol.7
, pp. 63-71
-
-
McBride, M.J.1
-
32
-
-
0036094227
-
Muscle infections in imported neon tetra, Paracheirodon innesi Myers: Limited occurrence of microsporidia and predominance of severe forms of columnaris disease caused by an Asian genomovar of Flavobacterium columnare
-
Michel C., Messiaen S., and Bernardet J.-F. Muscle infections in imported neon tetra, Paracheirodon innesi Myers: Limited occurrence of microsporidia and predominance of severe forms of columnaris disease caused by an Asian genomovar of Flavobacterium columnare. J. Fish Dis. 25 (2002) 253-263
-
(2002)
J. Fish Dis.
, vol.25
, pp. 253-263
-
-
Michel, C.1
Messiaen, S.2
Bernardet, J.-F.3
-
33
-
-
0036353265
-
Phylogenetic structure of the genera Flexibacter, Flexithrix, and Microscilla deduced from 16S rRNA sequence analysis
-
Nakagawa Y., Sakane T., Suzuki M., and Hatano K. Phylogenetic structure of the genera Flexibacter, Flexithrix, and Microscilla deduced from 16S rRNA sequence analysis. J. Gen. Appl. Microbiol. 48 (2002) 155-165
-
(2002)
J. Gen. Appl. Microbiol.
, vol.48
, pp. 155-165
-
-
Nakagawa, Y.1
Sakane, T.2
Suzuki, M.3
Hatano, K.4
-
34
-
-
0029864119
-
Emendation of the genus Cytophaga and transfer of Cytophaga agarovorans and Cytophaga salmonicolor to Marinilabilia gen. nov.: phylogenetic analysis of the Flavobacterium-Cytophaga complex
-
Nakagawa Y., and Yamasato K. Emendation of the genus Cytophaga and transfer of Cytophaga agarovorans and Cytophaga salmonicolor to Marinilabilia gen. nov.: phylogenetic analysis of the Flavobacterium-Cytophaga complex. Int. J. Syst. Bacteriol. 46 (1996) 599-603
-
(1996)
Int. J. Syst. Bacteriol.
, vol.46
, pp. 599-603
-
-
Nakagawa, Y.1
Yamasato, K.2
-
35
-
-
0030618312
-
Yellow pigmented filamentous bacteria connected with farmed salmonid fish mortality
-
Rintamäki-Kinnunen P., Bernardet J.-F., and Bloigu A. Yellow pigmented filamentous bacteria connected with farmed salmonid fish mortality. Aqua-culture 149 (1997) 1-14
-
(1997)
Aqua-culture
, vol.149
, pp. 1-14
-
-
Rintamäki-Kinnunen, P.1
Bernardet, J.-F.2
Bloigu, A.3
-
36
-
-
0028028182
-
A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology
-
Stackebrandt E., and Goebel B.M. A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int. J. Syst. Bacteriol. 44 (1994) 846-849
-
(1994)
Int. J. Syst. Bacteriol.
, vol.44
, pp. 846-849
-
-
Stackebrandt, E.1
Goebel, B.M.2
-
37
-
-
0036856557
-
Differences in chondroitin AC lyase activity of Flavobacterium columnare isolates
-
Stringer-Roth K.M., Yunghans W., and Caslake L.F. Differences in chondroitin AC lyase activity of Flavobacterium columnare isolates. J. Fish Dis. 25 (2002) 687-691
-
(2002)
J. Fish Dis.
, vol.25
, pp. 687-691
-
-
Stringer-Roth, K.M.1
Yunghans, W.2
Caslake, L.F.3
-
38
-
-
0033409340
-
Genotypic diversity of strains of Flavobacterium columnare from diseased fishes
-
Triyanto A., and Wakabayashi H. Genotypic diversity of strains of Flavobacterium columnare from diseased fishes. Fish Pathol. 34 (1999) 65-71
-
(1999)
Fish Pathol.
, vol.34
, pp. 65-71
-
-
Triyanto, A.1
Wakabayashi, H.2
-
39
-
-
0032126955
-
Development of a polymerase chain reaction assay for identification and detection of the fish pathogen Flavobacterium psychrophilum
-
Urdaci M.C., Chakroun C., Faure D., and Bernardet J.-F. Development of a polymerase chain reaction assay for identification and detection of the fish pathogen Flavobacterium psychrophilum. Res. Microbiol. 149 (1998) 519-530
-
(1998)
Res. Microbiol.
, vol.149
, pp. 519-530
-
-
Urdaci, M.C.1
Chakroun, C.2
Faure, D.3
Bernardet, J.-F.4
-
40
-
-
16344389614
-
Transmission and detection of Flavobacterium columnare in channel catfish Inctalarus punctatus
-
Welker T.L., Shoemaker C.A., Arias C.R., and Klesius P.H. Transmission and detection of Flavobacterium columnare in channel catfish Inctalarus punctatus. Dis. Aquat. Organ. 63 (2005) 129-138
-
(2005)
Dis. Aquat. Organ.
, vol.63
, pp. 129-138
-
-
Welker, T.L.1
Shoemaker, C.A.2
Arias, C.R.3
Klesius, P.H.4
-
42
-
-
0026323259
-
Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes
-
Versalovic J., Koeuth T., and Lupski J.R. Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes. Nucleic Acids Res. 19 (1991) 6823-6831
-
(1991)
Nucleic Acids Res.
, vol.19
, pp. 6823-6831
-
-
Versalovic, J.1
Koeuth, T.2
Lupski, J.R.3
|