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Volumn 158, Issue 1, 2007, Pages 18-30

Phenotypic and molecular characterisation of fish-borne Flavobacterium johnsoniae-like isolates from aquaculture systems in South Africa

Author keywords

Aquaculture; Flavobacterium spp; Genotyping

Indexed keywords

AQUACULTURE; ARTICLE; BACTERIUM IDENTIFICATION; FLAVOBACTERIA; FLAVOBACTERIUM JOHNSONIAE; GENE AMPLIFICATION; MOLECULAR DYNAMICS; NONHUMAN; NUCLEOTIDE SEQUENCE; PATHOGENESIS; PHENOTYPE; PRIORITY JOURNAL; PROTEIN ANALYSIS; SOUTH AFRICA; TILAPIA;

EID: 33846840967     PISSN: 09232508     EISSN: 17697123     Source Type: Journal    
DOI: 10.1016/j.resmic.2006.09.001     Document Type: Article
Times cited : (40)

References (42)
  • 2
    • 0001326017 scopus 로고
    • Study of bacteriophage infecting the myxobacterium Chondrococcus columnaris
    • Anacker R.L., and Ordal E.J. Study of bacteriophage infecting the myxobacterium Chondrococcus columnaris. J. Bacteriol. 70 (1955) 738-741
    • (1955) J. Bacteriol. , vol.70 , pp. 738-741
    • Anacker, R.L.1    Ordal, E.J.2
  • 3
    • 0004270170 scopus 로고
    • Ausubel F.M., Brent R., Kingston R.E., Moore D.D., Seidman J.D., Smith J.A., and Struhl K. (Eds), Wiley, New York
    • In: Ausubel F.M., Brent R., Kingston R.E., Moore D.D., Seidman J.D., Smith J.A., and Struhl K. (Eds). Current Protocols in Molecular Biology vol. 2 (1989), Wiley, New York
    • (1989) Current Protocols in Molecular Biology , vol.2
  • 4
    • 0037290240 scopus 로고    scopus 로고
    • Rapid detection of columnaris disease in channel catfish (Ictalaruspunctatus) with anew species-specific 16S-rRNA gene-based PCR primer for Flavobacterium columnare
    • Bader J.A., Shoemaker C.A., and Klesius P.H. Rapid detection of columnaris disease in channel catfish (Ictalaruspunctatus) with anew species-specific 16S-rRNA gene-based PCR primer for Flavobacterium columnare. J. Microbiol. Methods 52 (2003) 209-220
    • (2003) J. Microbiol. Methods , vol.52 , pp. 209-220
    • Bader, J.A.1    Shoemaker, C.A.2    Klesius, P.H.3
  • 7
    • 0035989637 scopus 로고    scopus 로고
    • Proposed minimal standards for describing new taxa of the Flavobacteriaceae and emended description of the family
    • Bernardet J.-F., Nakagawa Y., and Holmes B. Proposed minimal standards for describing new taxa of the Flavobacteriaceae and emended description of the family. Int. J. Syst. Evol. Microbiol. 52 (2002) 1049-1070
    • (2002) Int. J. Syst. Evol. Microbiol. , vol.52 , pp. 1049-1070
    • Bernardet, J.-F.1    Nakagawa, Y.2    Holmes, B.3
  • 8
    • 0030052649 scopus 로고    scopus 로고
    • Cutting a Gordian knot: emended classification and description of the genus Flavobacterium, emended description of the family Flavobacteriaceae, and proposal of Flavobacterium hydatis nom. nov. (Basonym, Cytophaga aquatilis Strohl and Tait 1978)
    • Bernardet J.-F., Segers P., Vancanneyt M., Berthe E., Kersters K., and Vandamme P. Cutting a Gordian knot: emended classification and description of the genus Flavobacterium, emended description of the family Flavobacteriaceae, and proposal of Flavobacterium hydatis nom. nov. (Basonym, Cytophaga aquatilis Strohl and Tait 1978). Int. J. Syst. Bacteriol. 46 (1996) 128-148
    • (1996) Int. J. Syst. Bacteriol. , vol.46 , pp. 128-148
    • Bernardet, J.-F.1    Segers, P.2    Vancanneyt, M.3    Berthe, E.4    Kersters, K.5    Vandamme, P.6
  • 9
    • 0018800089 scopus 로고
    • A rapid alkaline extraction procedure for screening recombinant plasmid DNA
    • Birnboim H.C., and Doly J. A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucleic Acids Res. 7 (1979) 1513-1523
    • (1979) Nucleic Acids Res. , vol.7 , pp. 1513-1523
    • Birnboim, H.C.1    Doly, J.2
  • 10
    • 33846800529 scopus 로고    scopus 로고
    • J. Bohnert, B. Huebner, Y Neitzel, K. Botzenhart, U. Szezwyk, In situ identification of bacteria from a karstic aquifer using rRNA-targeted oligonucleotide probes, GenBank sequence AF336355 (2001).
  • 11
    • 33645947318 scopus 로고    scopus 로고
    • 16S rRNA gene sequencing versus the API 20 NE system and the VITEK 2ID-GNB card for identification of nonfermenting Gram-negative bacteria in the clinical laboratory
    • Bosshard P.P., Zbinden R., Abels S., Böddinghaus B., Altwegg M., and Böttger E.C. 16S rRNA gene sequencing versus the API 20 NE system and the VITEK 2ID-GNB card for identification of nonfermenting Gram-negative bacteria in the clinical laboratory. J. Clin. Microbiol. 44 (2006) 1359-1366
    • (2006) J. Clin. Microbiol. , vol.44 , pp. 1359-1366
    • Bosshard, P.P.1    Zbinden, R.2    Abels, S.3    Böddinghaus, B.4    Altwegg, M.5    Böttger, E.C.6
  • 12
    • 4344604282 scopus 로고    scopus 로고
    • Improved growth of Flavobacterium psychrophilum using a new culture medium
    • Cepeda C., García-Márquez S., and Santos Y. Improved growth of Flavobacterium psychrophilum using a new culture medium. Aquaculture 238 (2004) 75-82
    • (2004) Aquaculture , vol.238 , pp. 75-82
    • Cepeda, C.1    García-Márquez, S.2    Santos, Y.3
  • 13
    • 0032581316 scopus 로고    scopus 로고
    • Fingerprinting of Flavobacterium psychrophilum isolates by ribotyping and plasmid profiling
    • Chakroun C., Grimont E., Urdaci M.C., and Bernardet J.-F. Fingerprinting of Flavobacterium psychrophilum isolates by ribotyping and plasmid profiling. Dis. Aquat. Org. 33 (1998) 167-177
    • (1998) Dis. Aquat. Org. , vol.33 , pp. 167-177
    • Chakroun, C.1    Grimont, E.2    Urdaci, M.C.3    Bernardet, J.-F.4
  • 14
    • 0031592251 scopus 로고    scopus 로고
    • Randomly amplified polymorphic DNA analysis provides rapid differentiation among isolates of the fish pathogen Flavobacterium psychrophilum and among Flavobacterium species
    • Chakroun C., Urdaci M.C., Faure D., Grimont E., and Bernardet J.-F. Randomly amplified polymorphic DNA analysis provides rapid differentiation among isolates of the fish pathogen Flavobacterium psychrophilum and among Flavobacterium species. Dis. Aquat. Org. 31 (1997) 187-196
    • (1997) Dis. Aquat. Org. , vol.31 , pp. 187-196
    • Chakroun, C.1    Urdaci, M.C.2    Faure, D.3    Grimont, E.4    Bernardet, J.-F.5
  • 15
    • 0036151760 scopus 로고    scopus 로고
    • Molecular relationship between two groups of the genus Leptospirillum and the finding that Leptospirillum ferriphilum sp. nov. dominates South African commercial biooxidation tanks that operate at 40 °C
    • Coram N.J., and Rawlings D.E. Molecular relationship between two groups of the genus Leptospirillum and the finding that Leptospirillum ferriphilum sp. nov. dominates South African commercial biooxidation tanks that operate at 40 °C. Appl. Environ. Microbiol. 68 (2002) 838-845
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 838-845
    • Coram, N.J.1    Rawlings, D.E.2
  • 16
    • 0035144167 scopus 로고    scopus 로고
    • Antigenic characterisation of the fish pathogen Flavobacterium psychrophilum
    • Crump E.M., Perry M.B., Clouthier S.C., and Kay W.W. Antigenic characterisation of the fish pathogen Flavobacterium psychrophilum. Appl. Environ. Microbiol. 67 (2001) 750-759
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 750-759
    • Crump, E.M.1    Perry, M.B.2    Clouthier, S.C.3    Kay, W.W.4
  • 17
    • 22144478707 scopus 로고    scopus 로고
    • Genetic diversity of Flavobacterium columnare examined by restriction fragment length polymorphism and sequencing of the 16S ribosomal RNA gene and the 16S-23S rDNA spacer
    • Darwish A.M., and Ismaiel A.A. Genetic diversity of Flavobacterium columnare examined by restriction fragment length polymorphism and sequencing of the 16S ribosomal RNA gene and the 16S-23S rDNA spacer. Mol. Cell. Probes 19 (2005) 267-274
    • (2005) Mol. Cell. Probes , vol.19 , pp. 267-274
    • Darwish, A.M.1    Ismaiel, A.A.2
  • 18
    • 5644282567 scopus 로고    scopus 로고
    • Identification of Flavobacterium columnare by a species-specific polymerase chain reaction and renaming of ATCC43622 strain to Flavobacterium johnsoniae
    • Darwish A.M., Ismaiel A.A., Newton J.C., and Tang J. Identification of Flavobacterium columnare by a species-specific polymerase chain reaction and renaming of ATCC43622 strain to Flavobacterium johnsoniae. Mol. Cell. Probes 18 (2004) 421-427
    • (2004) Mol. Cell. Probes , vol.18 , pp. 421-427
    • Darwish, A.M.1    Ismaiel, A.A.2    Newton, J.C.3    Tang, J.4
  • 19
    • 0033398394 scopus 로고    scopus 로고
    • Characterisation of the adhesion of Flavobacterium columnare (Flexibacter columnaris) to gill tissue
    • Decostere A., Haesebrouck F., Van Driessche E., Charlier G., and Ducatelle R. Characterisation of the adhesion of Flavobacterium columnare (Flexibacter columnaris) to gill tissue. J. Fish Dis. 22 (1999) 465-474
    • (1999) J. Fish Dis. , vol.22 , pp. 465-474
    • Decostere, A.1    Haesebrouck, F.2    Van Driessche, E.3    Charlier, G.4    Ducatelle, R.5
  • 20
    • 29944433685 scopus 로고    scopus 로고
    • Experimental handling stress as infection-facilitating factor for the goldfish ulcerative disease
    • Dror M., Sinyakov M.S., Okun E., Dym M., Sredni B., and Avtalion R.R. Experimental handling stress as infection-facilitating factor for the goldfish ulcerative disease. Vet. Immunol. Immunopathol. 109 (2006) 279-287
    • (2006) Vet. Immunol. Immunopathol. , vol.109 , pp. 279-287
    • Dror, M.1    Sinyakov, M.S.2    Okun, E.3    Dym, M.4    Sredni, B.5    Avtalion, R.R.6
  • 22
    • 0027085819 scopus 로고
    • A partial phylogenetic analysis of the 'Flavobacterium-Bacteroides' phylum: basis for taxonomic restructuring
    • Gherna R., and Woese C.R. A partial phylogenetic analysis of the 'Flavobacterium-Bacteroides' phylum: basis for taxonomic restructuring. Syst. Appl. Microbiol. 15 (1992) 513-521
    • (1992) Syst. Appl. Microbiol. , vol.15 , pp. 513-521
    • Gherna, R.1    Woese, C.R.2
  • 23
    • 0030220506 scopus 로고    scopus 로고
    • Applicability of combined amplified ribosomal DNA restriction analysis (ARDRA) patterns in bacterial phylogeny and taxonomy
    • Heyndrickx M., Vauterin L., Vandamme P., Kersters K., and De Vos P. Applicability of combined amplified ribosomal DNA restriction analysis (ARDRA) patterns in bacterial phylogeny and taxonomy. J. Microbiol. Methods 26 (1996) 247-259
    • (1996) J. Microbiol. Methods , vol.26 , pp. 247-259
    • Heyndrickx, M.1    Vauterin, L.2    Vandamme, P.3    Kersters, K.4    De Vos, P.5
  • 24
    • 0842308827 scopus 로고    scopus 로고
    • Phylogenetic analysis and in situ identification of the intestinal microbial community of rainbow trout (Onchorynchus mykiss, Walbaum)
    • Huber I., Spanggaard B., Appel K.F., Rossen L., Nielsen T., and Gram L. Phylogenetic analysis and in situ identification of the intestinal microbial community of rainbow trout (Onchorynchus mykiss, Walbaum). J. Appl. Microbiol. 96 (2004) 117-132
    • (2004) J. Appl. Microbiol. , vol.96 , pp. 117-132
    • Huber, I.1    Spanggaard, B.2    Appel, K.F.3    Rossen, L.4    Nielsen, T.5    Gram, L.6
  • 25
    • 0023738045 scopus 로고
    • Numerical index of the discriminatory ability of typing systems: an application of Simpson's index of diversity
    • Hunter P.R., and Gaston M.A. Numerical index of the discriminatory ability of typing systems: an application of Simpson's index of diversity. J. Clin. Microbiol. 26 (1988) 2465-2466
    • (1988) J. Clin. Microbiol. , vol.26 , pp. 2465-2466
    • Hunter, P.R.1    Gaston, M.A.2
  • 26
    • 4444339841 scopus 로고    scopus 로고
    • Plasmid profiling of Japanese Flavobacterium psychrophilum isolates
    • Izumi S., and Aranishi F. Plasmid profiling of Japanese Flavobacterium psychrophilum isolates. J. Aquat. Anim. Health 16 (2004) 99-103
    • (2004) J. Aquat. Anim. Health , vol.16 , pp. 99-103
    • Izumi, S.1    Aranishi, F.2
  • 27
    • 0344515550 scopus 로고    scopus 로고
    • Genotyping of Flavobacterium psychrophilum using PCR-RFLP analysis
    • Izumi S., Aranishi F., and Wakabayashi H. Genotyping of Flavobacterium psychrophilum using PCR-RFLP analysis. Dis. Aquat. Org 56 (2003) 207-214
    • (2003) Dis. Aquat. Org , vol.56 , pp. 207-214
    • Izumi, S.1    Aranishi, F.2    Wakabayashi, H.3
  • 28
    • 0022342277 scopus 로고
    • A numerical taxonomic study of Flavobacterium-Cytophaga strains from dairy sources
    • Jooste P.J., Britz T.J., and De Haast J. A numerical taxonomic study of Flavobacterium-Cytophaga strains from dairy sources. J. Appl. Microbiol. 59 (1985) 311-323
    • (1985) J. Appl. Microbiol. , vol.59 , pp. 311-323
    • Jooste, P.J.1    Britz, T.J.2    De Haast, J.3
  • 29
    • 0034007752 scopus 로고    scopus 로고
    • Transposon insertions in the Flavobacterium johnsoniae ftsX gene disrupt gliding motility and cell division
    • Kempf M.J., and McBride M.J. Transposon insertions in the Flavobacterium johnsoniae ftsX gene disrupt gliding motility and cell division. J. Bacteriol. 182 (2000) 1671-1679
    • (2000) J. Bacteriol. , vol.182 , pp. 1671-1679
    • Kempf, M.J.1    McBride, M.J.2
  • 30
    • 0033815217 scopus 로고    scopus 로고
    • Comparative studies of Danish Flavobacterium psychrophilum isolates: ribotypes, plasmid profiles, serotypes and virulence
    • Madsen L., and Dalsgaard I. Comparative studies of Danish Flavobacterium psychrophilum isolates: ribotypes, plasmid profiles, serotypes and virulence. J. Fish Dis. 23 (2000) 211-218
    • (2000) J. Fish Dis. , vol.23 , pp. 211-218
    • Madsen, L.1    Dalsgaard, I.2
  • 31
    • 2642529310 scopus 로고    scopus 로고
    • Cytophaga-Flavobacterium gliding motility
    • McBride M.J. Cytophaga-Flavobacterium gliding motility. J. Mol. Microbiol. Biotechnol. 7 (2004) 63-71
    • (2004) J. Mol. Microbiol. Biotechnol. , vol.7 , pp. 63-71
    • McBride, M.J.1
  • 32
    • 0036094227 scopus 로고    scopus 로고
    • Muscle infections in imported neon tetra, Paracheirodon innesi Myers: Limited occurrence of microsporidia and predominance of severe forms of columnaris disease caused by an Asian genomovar of Flavobacterium columnare
    • Michel C., Messiaen S., and Bernardet J.-F. Muscle infections in imported neon tetra, Paracheirodon innesi Myers: Limited occurrence of microsporidia and predominance of severe forms of columnaris disease caused by an Asian genomovar of Flavobacterium columnare. J. Fish Dis. 25 (2002) 253-263
    • (2002) J. Fish Dis. , vol.25 , pp. 253-263
    • Michel, C.1    Messiaen, S.2    Bernardet, J.-F.3
  • 33
    • 0036353265 scopus 로고    scopus 로고
    • Phylogenetic structure of the genera Flexibacter, Flexithrix, and Microscilla deduced from 16S rRNA sequence analysis
    • Nakagawa Y., Sakane T., Suzuki M., and Hatano K. Phylogenetic structure of the genera Flexibacter, Flexithrix, and Microscilla deduced from 16S rRNA sequence analysis. J. Gen. Appl. Microbiol. 48 (2002) 155-165
    • (2002) J. Gen. Appl. Microbiol. , vol.48 , pp. 155-165
    • Nakagawa, Y.1    Sakane, T.2    Suzuki, M.3    Hatano, K.4
  • 34
    • 0029864119 scopus 로고    scopus 로고
    • Emendation of the genus Cytophaga and transfer of Cytophaga agarovorans and Cytophaga salmonicolor to Marinilabilia gen. nov.: phylogenetic analysis of the Flavobacterium-Cytophaga complex
    • Nakagawa Y., and Yamasato K. Emendation of the genus Cytophaga and transfer of Cytophaga agarovorans and Cytophaga salmonicolor to Marinilabilia gen. nov.: phylogenetic analysis of the Flavobacterium-Cytophaga complex. Int. J. Syst. Bacteriol. 46 (1996) 599-603
    • (1996) Int. J. Syst. Bacteriol. , vol.46 , pp. 599-603
    • Nakagawa, Y.1    Yamasato, K.2
  • 35
    • 0030618312 scopus 로고    scopus 로고
    • Yellow pigmented filamentous bacteria connected with farmed salmonid fish mortality
    • Rintamäki-Kinnunen P., Bernardet J.-F., and Bloigu A. Yellow pigmented filamentous bacteria connected with farmed salmonid fish mortality. Aqua-culture 149 (1997) 1-14
    • (1997) Aqua-culture , vol.149 , pp. 1-14
    • Rintamäki-Kinnunen, P.1    Bernardet, J.-F.2    Bloigu, A.3
  • 36
    • 0028028182 scopus 로고
    • A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology
    • Stackebrandt E., and Goebel B.M. A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int. J. Syst. Bacteriol. 44 (1994) 846-849
    • (1994) Int. J. Syst. Bacteriol. , vol.44 , pp. 846-849
    • Stackebrandt, E.1    Goebel, B.M.2
  • 37
    • 0036856557 scopus 로고    scopus 로고
    • Differences in chondroitin AC lyase activity of Flavobacterium columnare isolates
    • Stringer-Roth K.M., Yunghans W., and Caslake L.F. Differences in chondroitin AC lyase activity of Flavobacterium columnare isolates. J. Fish Dis. 25 (2002) 687-691
    • (2002) J. Fish Dis. , vol.25 , pp. 687-691
    • Stringer-Roth, K.M.1    Yunghans, W.2    Caslake, L.F.3
  • 38
    • 0033409340 scopus 로고    scopus 로고
    • Genotypic diversity of strains of Flavobacterium columnare from diseased fishes
    • Triyanto A., and Wakabayashi H. Genotypic diversity of strains of Flavobacterium columnare from diseased fishes. Fish Pathol. 34 (1999) 65-71
    • (1999) Fish Pathol. , vol.34 , pp. 65-71
    • Triyanto, A.1    Wakabayashi, H.2
  • 39
    • 0032126955 scopus 로고    scopus 로고
    • Development of a polymerase chain reaction assay for identification and detection of the fish pathogen Flavobacterium psychrophilum
    • Urdaci M.C., Chakroun C., Faure D., and Bernardet J.-F. Development of a polymerase chain reaction assay for identification and detection of the fish pathogen Flavobacterium psychrophilum. Res. Microbiol. 149 (1998) 519-530
    • (1998) Res. Microbiol. , vol.149 , pp. 519-530
    • Urdaci, M.C.1    Chakroun, C.2    Faure, D.3    Bernardet, J.-F.4
  • 40
    • 16344389614 scopus 로고    scopus 로고
    • Transmission and detection of Flavobacterium columnare in channel catfish Inctalarus punctatus
    • Welker T.L., Shoemaker C.A., Arias C.R., and Klesius P.H. Transmission and detection of Flavobacterium columnare in channel catfish Inctalarus punctatus. Dis. Aquat. Organ. 63 (2005) 129-138
    • (2005) Dis. Aquat. Organ. , vol.63 , pp. 129-138
    • Welker, T.L.1    Shoemaker, C.A.2    Arias, C.R.3    Klesius, P.H.4
  • 42
    • 0026323259 scopus 로고
    • Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes
    • Versalovic J., Koeuth T., and Lupski J.R. Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes. Nucleic Acids Res. 19 (1991) 6823-6831
    • (1991) Nucleic Acids Res. , vol.19 , pp. 6823-6831
    • Versalovic, J.1    Koeuth, T.2    Lupski, J.R.3


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