메뉴 건너뛰기




Volumn 178, Issue 1, 2011, Pages

Comparative methods as a statistical fix: The dangers of ignoring an evolutionary model

Author keywords

Comparative methods; Generalized least squares (GLS); Phylogenetic eigenvector regression (PVR)

Indexed keywords

COMPARATIVE STUDY; DATA SET; ECOLOGICAL MODELING; EIGENVALUE; LEAST SQUARES METHOD; NUMERICAL MODEL; PARAMETERIZATION; PHYLOGENETICS; REGRESSION ANALYSIS; VARIANCE ANALYSIS;

EID: 79959313069     PISSN: 00030147     EISSN: None     Source Type: Journal    
DOI: 10.1086/660272     Document Type: Article
Times cited : (72)

References (56)
  • 1
    • 79959304976 scopus 로고    scopus 로고
    • The evolution of large-scale body size clines in Plethodon salamanders: Evidence of heat-balance or species-specific artifact
    • doi:10.11 11/j.1600-0587.2011.06911.x
    • Adams, D. C, and J. O. Church. 2011. The evolution of large-scale body size clines in Plethodon salamanders: evidence of heat-balance or species-specific artifact. Ecography 34, doi:10.11 11/j.1600-0587.2011.06911.x.
    • (2011) Ecography , pp. 34
    • Adams, D.C.1    Church, J.O.2
  • 4
    • 84883992559 scopus 로고    scopus 로고
    • Ecological models and data in R
    • Princeton, NJ
    • Bolker, B. 2008. Ecological models and data in R. Princeton University Press, Princeton, NJ.
    • (2008) Princeton University Press
    • Bolker, B.1
  • 7
    • 0022210656 scopus 로고
    • The quantitative assessment of phylogenetic constraints in comparative analyses: Sexual dimorphism in body weights among primates
    • Cheverud, J. M., M. M. Dow, and W. Leutenegger. 1985. The quantitative assessment of phylogenetic constraints in comparative analyses: sexual dimorphism in body weights among primates. Evolution 39:1335-1351.
    • (1985) Evolution , vol.39 , pp. 1335-1351
    • Cheverud, J.M.1    Dow, M.M.2    Leutenegger, W.3
  • 9
    • 3643135272 scopus 로고    scopus 로고
    • An eigenvector method for estimating phylogenetic inertia
    • Diniz-Filho, J. A. F., C. E. R. de Sant Ana, and L. M. Bini. 1998. An eigenvector method for estimating phylogenetic inertia. Evolution 52:1247-1262.
    • (1998) Evolution , vol.52 , pp. 1247-1262
    • Diniz-Filho, J.A.F.1    de Sant Ana, C.E.R.2    Bini, L.M.3
  • 10
    • 33847215823 scopus 로고    scopus 로고
    • Effects of incorporating spatial autocorrelation into the analysis of species distribution data
    • Dormann, C. F. 2007. Effects of incorporating spatial autocorrelation into the analysis of species distribution data. Global Ecology and Biogeography 16:129-138.
    • (2007) Global Ecology and Biogeography , vol.16 , pp. 129-138
    • Dormann, C.F.1
  • 11
    • 35848930781 scopus 로고    scopus 로고
    • Methods to account for spatial autocorrelation in the analysis of species distributional data: A review
    • Dormann, C. F., J. M. McPherson, M. B. Araujo, R. Bivand, J. Bolliger, G. Carl, R. G. Davies, et al. 2007. Methods to account for spatial autocorrelation in the analysis of species distributional data: a review. Ecography 30:609-628.
    • (2007) Ecography , vol.30 , pp. 609-628
    • Dormann, C.F.1    McPherson, J.M.2    Araujo, M.B.3    Bivand, R.4    Bolliger, J.5    Carl, G.6    Davies, R.G.7
  • 12
    • 0015808083 scopus 로고
    • Maximum-likelihood estimation of evolutionary trees from continuous characters
    • Felsenstein, J. 1973. Maximum-likelihood estimation of evolutionary trees from continuous characters. American Journal of Human Genetics 25:471-492.
    • (1973) American Journal of Human Genetics , vol.25 , pp. 471-492
    • Felsenstein, J.1
  • 13
    • 0022203256 scopus 로고
    • Phylogenies and the comparative method
    • Felsenstein, J. 1985. Phylogenies and the comparative method. American Naturalist 125:1-15.
    • (1985) American Naturalist , vol.125 , pp. 1-15
    • Felsenstein, J.1
  • 15
    • 0034077784 scopus 로고    scopus 로고
    • Phylogenetic tests of ecological and evolutionary hypotheses: Checking for phylogenetic independence
    • Freckleton, R. P. 2000. Phylogenetic tests of ecological and evolutionary hypotheses: checking for phylogenetic independence. Functional Ecology 14:129-134.
    • (2000) Functional Ecology , vol.14 , pp. 129-134
    • Freckleton, R.P.1
  • 16
    • 67649204837 scopus 로고    scopus 로고
    • The seven deadly sins of comparative analysis
    • Freckleton, R. P. 2009. The seven deadly sins of comparative analysis. Journal of Evolutionary Biology 22:1367-1375.
    • (2009) Journal of Evolutionary Biology , vol.22 , pp. 1367-1375
    • Freckleton, R.P.1
  • 17
    • 33751064527 scopus 로고    scopus 로고
    • Detecting non-Brownian trait evolution in adaptive radiations
    • Freckleton, R. P., and P. H. Harvey. 2006. Detecting non-Brownian trait evolution in adaptive radiations. PLoS Biology 4:2104-2111.
    • (2006) PLoS Biology , vol.4 , pp. 2104-2111
    • Freckleton, R.P.1    Harvey, P.H.2
  • 18
    • 58149218288 scopus 로고    scopus 로고
    • Space versus phylogeny: Disentangling phylogenetic and spatial signals in comparative data
    • Freckleton, R. P., and W. Jetz. 2009. Space versus phylogeny: disentangling phylogenetic and spatial signals in comparative data. Proceedings of the Royal Society B: Biological Sciences 276:21-30.
    • (2009) Proceedings of the Royal Society B: Biological Sciences , vol.276 , pp. 21-30
    • Freckleton, R.P.1    Jetz, W.2
  • 19
    • 0036920097 scopus 로고    scopus 로고
    • Phylogenetic analysis and comparative data: A test and review of evidence
    • Freckleton, R. P., P. H. Harvey, and M. Pagel. 2002. Phylogenetic analysis and comparative data: a test and review of evidence. American Naturalist 160:712-726.
    • (2002) American Naturalist , vol.160 , pp. 712-726
    • Freckleton, R.P.1    Harvey, P.H.2    Pagel, M.3
  • 20
    • 10344228708 scopus 로고    scopus 로고
    • Comparative methods for adaptive radiations
    • in T M. Blackburn and K. J. Gaston, eds, Blackwell Scientific, Oxford
    • Freckleton, R. P., M. Pagel, and P. H. Harvey. 2003. Comparative methods for adaptive radiations. Pages 391-407 in T M. Blackburn and K. J. Gaston, eds. Macroecology: concepts and consequences. Blackwell Scientific, Oxford.
    • (2003) Macroecology: Concepts and Consequences , pp. 391-407
    • Freckleton, R.P.1    Pagel, M.2    Harvey, P.H.3
  • 21
    • 0034001912 scopus 로고    scopus 로고
    • Using the past to predict the present: Confidence intervals for regression equations in phylogenetic comparative methods
    • Garland, T, Jr., and A. R. Ives. 2000. Using the past to predict the present: confidence intervals for regression equations in phylogenetic comparative methods. American Naturalist 155:346-364.
    • (2000) American Naturalist , vol.155 , pp. 346-364
    • Garland Jr., T.1    Ives, A.R.2
  • 22
    • 11944256302 scopus 로고
    • Procedures fo r' the analysis of comparative data using phylogenetically independent contrasts
    • Garland, T., Jr., P. H. Harvey, and A. R. Ives. 1992. Procedures fo r' the analysis of comparative data using phylogenetically independent contrasts. Systematic Biology 41:18-32.
    • (1992) Systematic Biology , vol.41 , pp. 18-32
    • Garland Jr., T.1    Harvey, P.H.2    Ives, A.R.3
  • 25
    • 84860854099 scopus 로고
    • Adaptation: Statistics and a null model for estimating phylogenetic effects
    • Gittleman, J. L., and M. Kot. 1990. Adaptation: statistics and a null model for estimating phylogenetic effects. Systematic Biology 39: 227-241.
    • (1990) Systematic Biology , vol.39 , pp. 227-241
    • Gittleman, J.L.1    Kot, M.2
  • 27
    • 77749279661 scopus 로고    scopus 로고
    • General quantitative genetic methods for comparative biology: Phylogenies, taxonomies and multi-trait models for continuous and categorical characters
    • Hadfield, J. D., and S. Nakagawa. 2010. General quantitative genetic methods for comparative biology: phylogenies, taxonomies and multi-trait models for continuous and categorical characters. Journal of Evolutionary Biology 23:494-508.
    • (2010) Journal of Evolutionary Biology , vol.23 , pp. 494-508
    • Hadfield, J.D.1    Nakagawa, S.2
  • 29
    • 0030772835 scopus 로고    scopus 로고
    • Stabilizing selection and the comparative analysis of adaptation
    • Hansen, T F. 1997. Stabilizing selection and the comparative analysis of adaptation. Evolution 51:1341-1351.
    • (1997) Evolution , vol.51 , pp. 1341-1351
    • Hansen, T.F.1
  • 30
    • 47749107969 scopus 로고    scopus 로고
    • A comparative method for studying adaptation to a randomly evolving environment
    • Hansen, T F., J. Pienaar, and S. H. Orzack. 2008. A comparative method for studying adaptation to a randomly evolving environment. Evolution 62:1965-1977.
    • (2008) Evolution , vol.62 , pp. 1965-1977
    • Hansen, T.F.1    Pienaar, J.2    Orzack, S.H.3
  • 31
    • 0043023771 scopus 로고    scopus 로고
    • Tempo and mode of evolutionary radiation in iguanian lizards
    • Harmon, L. J., J. A. Schulte II, A. Larson, and J. B. Losos. 2003 Tempo and mode of evolutionary radiation in iguanian lizards. Science 301:961-964.
    • (2003) Science , vol.301 , pp. 961-964
    • Harmon, L.J.1    Schulte, J.A.2    Larson, A.3    Losos, J.B.4
  • 32
    • 0000862882 scopus 로고
    • Life history variation in primates
    • Harvey, P. H, and T H. Clutton-Brock. 1985. Life history variation in primates. Evolution 39:559-581.
    • (1985) Evolution , vol.39 , pp. 559-581
    • Harvey, P.H.1    Clutton-Brock, T.H.2
  • 36
    • 34447280382 scopus 로고    scopus 로고
    • Within-species variation and measurement error in phylogenetic comparative methods
    • Ives, A. R., P. E. Midford, and T Garland Jr. 2007. Within-species variation and measurement error in phylogenetic comparative methods. Systematic Biology 56:252-270
    • (2007) Systematic Biology , vol.56 , pp. 252-270
    • Ives, A.R.1    Midford, P.E.2    Garland, T.3
  • 37
    • 0347301660 scopus 로고    scopus 로고
    • Comparative methods based on species mean values
    • Kelly, C, and T D. Price. 2004. Comparative methods based on species mean values. Mathematical Biosciences 187:135-154.
    • (2004) Mathematical Biosciences , vol.187 , pp. 135-154
    • Kelly, C.1    Price, T.D.2
  • 38
    • 70350397839 scopus 로고    scopus 로고
    • Combining spatial and phylogenetic eigenvector filtering in trait analysis
    • Kühn, I., M. P. Nobis, and W. Durka. 2009. Combining spatial and phylogenetic eigenvector filtering in trait analysis. Global Ecology and Biogeography 18:745-758.
    • (2009) Global Ecology and Biogeography , vol.18 , pp. 745-758
    • Kühn, I.1    Nobis, M.P.2    Durka, W.3
  • 39
    • 49649126152 scopus 로고    scopus 로고
    • Trait interactions help explain plant invasion success in the German flora
    • Küster, E. C, I. Kühn, H. Bruelheide, and S. Klotz. 2008. Trait interactions help explain plant invasion success in the German flora. Journal of Ecology 96:860-868.
    • (2008) Journal of Ecology , vol.96 , pp. 860-868
    • Küster, E.C.1    Kühn, I.2    Bruelheide, H.3    Klotz, S.4
  • 40
  • 41
    • 0025635488 scopus 로고
    • The rate of morphological evolution in mammals from the standpoint of the neutral expectation
    • Lynch, M. 1990. The rate of morphological evolution in mammals from the standpoint of the neutral expectation. American Naturalist 136:727-741.
    • (1990) American Naturalist , vol.136 , pp. 727-741
    • Lynch, M.1
  • 42
    • 0026054313 scopus 로고
    • Phylogenetic analyses of the correlated evolution of continuous characters: A simulation study
    • Martins, E. P., and T Garland Jr. 1991. Phylogenetic analyses of the correlated evolution of continuous characters: a simulation study. Evolution 45:534-557.
    • (1991) Evolution , vol.45 , pp. 534-557
    • Martins, E.P.1    Garland, T.2
  • 43
    • 0030619995 scopus 로고    scopus 로고
    • Phylogenies and the comparative method: A general approach to incorporating phylogenetic information into the analysis of interspecific data
    • Martins, E. P., and T F. Hansen. 1997. Phylogenies and the comparative method: a general approach to incorporating phylogenetic information into the analysis of interspecific data. American Naturalist 149:646-667.
    • (1997) American Naturalist , vol.149 , pp. 646-667
    • Martins, E.P.1    Hansen, T.F.2
  • 46
    • 0031421806 scopus 로고    scopus 로고
    • Inferring evolutionary processes from phylogenies
    • Pagel, M. 1997. Inferring evolutionary processes from phylogenies. Zoologica Scripta 26:331-348.
    • (1997) Zoologica Scripta , vol.26 , pp. 331-348
    • Pagel, M.1
  • 47
    • 0033613376 scopus 로고    scopus 로고
    • Inferring the historical patterns of biological evolution
    • Pagel, M. 1999. Inferring the historical patterns of biological evolution. Nature 401:877-884.
    • (1999) Nature , vol.401 , pp. 877-884
    • Pagel, M.1
  • 48
    • 0026769380 scopus 로고
    • On solving the correct problem: Wishing does not make it so
    • Pagel, M. D., and P. H. Harvey. 1992. On solving the correct problem: wishing does not make it so. Journal of Theoretical Biology 156: 425-430.
    • (1992) Journal of Theoretical Biology , vol.156 , pp. 425-430
    • Pagel, M.D.1    Harvey, P.H.2
  • 49
    • 13244298387 scopus 로고    scopus 로고
    • Statistical analysis of diversification with species traits
    • Paradis, E. 2005. Statistical analysis of diversification with species traits. Evolution 59:1-12.
    • (2005) Evolution , vol.59 , pp. 1-12
    • Paradis, E.1
  • 50
    • 1042304216 scopus 로고    scopus 로고
    • APE: Analyses of phy-logenetics and evolution in R language
    • Paradis, E., J. Claude, and K. Strimmer. 2004. APE: analyses of phy-logenetics and evolution in R language. Bioinformatics 20:289-290.
    • (2004) Bioinformatics , vol.20 , pp. 289-290
    • Paradis, E.1    Claude, J.2    Strimmer, K.3
  • 51
    • 70149113077 scopus 로고    scopus 로고
    • R Development Core Team, R Foundation for Statistical Computing, Vienna
    • R Development Core Team. 2009. R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna.
    • (2009) R: A Language and Environment For Statistical Computing
  • 52
    • 0030482765 scopus 로고    scopus 로고
    • Applications of phylogenetically independent contrasts: A mixed progress report
    • Ricklefs, R. E., and J. M. Starck. 1996. Applications of phylogenetically independent contrasts: a mixed progress report. Oikos 77:167-172.
    • (1996) Oikos , vol.77 , pp. 167-172
    • Ricklefs, R.E.1    Starck, J.M.2
  • 53
    • 0035685482 scopus 로고    scopus 로고
    • Comparative methods forthe analysis of continuous variables: Geometric interpretations
    • Rohlf, F. J. 2001. Comparative methods forthe analysis of continuous variables: geometric interpretations. Evolution 55:2143-2160.
    • (2001) Evolution , vol.55 , pp. 2143-2160
    • Rohlf, F.J.1
  • 54
    • 77954201306 scopus 로고    scopus 로고
    • Phylogenetic, spatial and environmental components of extinction risk in carnivores
    • Safi, K., and N. Pettorelli. 2010. Phylogenetic, spatial and environmental components of extinction risk in carnivores. Global Ecology and Biogeography 19:352-362.
    • (2010) Global Ecology and Biogeography , vol.19 , pp. 352-362
    • Safi, K.1    Pettorelli, N.2
  • 55
    • 77958152206 scopus 로고    scopus 로고
    • Sampling through time in birth-death trees
    • Stadler, T 2010. Sampling through time in birth-death trees. Journal of Theoretical Biology 267:396-404.
    • (2010) Journal of Theoretical Biology , vol.267 , pp. 396-404
    • Stadler, T.1
  • 56
    • 33747174297 scopus 로고    scopus 로고
    • Comparative analyses of the influence of developmental mode on phenotypic diversification rates in shorebirds
    • Thomas, G. H, R. P. Freckleton, and T Szekely 2006. Comparative analyses of the influence of developmental mode on phenotypic diversification rates in shorebirds. Proceedings of the Royal Society B: Biological Sciences 273:1619-1624.
    • (2006) Proceedings of the Royal Society B: Biological Sciences , vol.273 , pp. 1619-1624
    • Thomas, G.H.1    Freckleton, R.P.2    Szekely, T.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.