Biotechnological production of polyamines by Bacteria: Recent achievements and future perspectives

Applied Microbiology and Biotechnology

Volumn 91, Issue 1, 2011, Pages 17-30

  Schneider, Jens ^a   Wendisch, Volker F ^a  

^a BIELEFELD UNIVERSITY   (Germany)

Author keywords

1,4 diaminobutane; 1,5 diaminopentane; Cadaverine; Corynebacterium glutamicum; Escherichia coli; Polyamides; Polyamines; Polymer; Putrescine

Indexed keywords

1 ,4-DIAMINOBUTANE; 1,5-DIAMINOPENTANE; CADAVERINE; CORYNEBACTERIUM GLUTAMICUM; POLYAMINES; PUTRESCINE;

AMIDES; ARGININE; BACTERIA; BACTERIOLOGY; BIOCHEMISTRY; ESCHERICHIA COLI; INDUSTRIAL APPLICATIONS; INDUSTRY; METABOLISM; ORGANIC ACIDS; PHYSIOLOGY; PLASTICS APPLICATIONS; POLYAMIDES; POSITIVE IONS;

AMINES;

ARGININE; CADAVERINE; LYSINE; NORSPERMIDINE; ORNITHINE; POLYAMINE; PUTRESCINE; SPERMIDINE; UNCLASSIFIED DRUG;

ADVANCED TECHNOLOGY; ALKANE; AMINO ACID; AMMONIUM COMPOUND; BACTERIUM; BIOTECHNOLOGY; EXCRETION; FERMENTATION; FUTURE PROSPECT; LITERATURE REVIEW; METABOLISM; MICROBIAL ACTIVITY; PLASTIC; POLYMER;

AMINO ACID METABOLISM; AMINO ACID TRANSPORT; ARCHAEBACTERIUM; BACTERIAL METABOLISM; BACTERIAL STRAIN; BIOSYNTHESIS; BIOTECHNOLOGICAL PRODUCTION; CATABOLISM; CORYNEBACTERIUM GLUTAMICUM; ESCHERICHIA COLI; EXCRETION; FERMENTATION; INDUSTRIAL PRODUCTION; NONHUMAN; POLYAMINE METABOLISM; SHORT SURVEY; VIBRIO;

CORYNEBACTERIUM GLUTAMICUM; ESCHERICHIA COLI; GENETIC ENGINEERING; INDUSTRIAL MICROBIOLOGY; POLYAMINES;

BACTERIA (MICROORGANISMS); CORYNEBACTERIUM GLUTAMICUM; ESCHERICHIA COLI;

EID: 79959256632     PISSN: 01757598     EISSN: 14320614     Source Type: Journal    
DOI: 10.1007/s00253-011-3252-0     Document Type: Short Survey

References (98)

1. Applebaum DM, Dunlap JC, Morris DR (1977) Comparison of the biosynthetic and biodegradative ornithine decarboxylases of Escherichia coli. Biochemistry 16:1580-1584 (Pubitemid 8081452)
2. Applebaum D, Sabo DL, Fischer EH, Morris DR (1975) Biodegradative ornithine decarboxylase of Escherichia coli. Purification, properties, and pyridoxal 5″-phosphate binding site. Biochemistry 14:3675-3681
3. Bachrach U (1962a) Formation of pyrroline and propane diamine from spermidine by extracts of Serratia marcescens. Nature 194:377-378
4. Bachrach U (1962b) Spermidine oxidase from Serratia marcescens. J Biol Chem 237:3443-3448
5. Bellmann A, Vrljic M, Patek M, Sahm H, Krämer R, Eggeling L (2001) Expression control and specificity of the basic amino acid exporter LysE of Corynebacterium glutamicum. Microbiology 147:1765-1774 (Pubitemid 32684919)
6. Blethen SL, Boeker EA, Snell EE (1968) Arginine decarboxylase from Escherichia coli I. Purification and specificity for substrates and coenzyme. J Biol Chem 243:1671-1677
7. Bowman WH, Tabor CW, Tabor H (1973) Spermidine biosynthesis. Purification and properties of propylamine transferase from Escherichia coli. J Biol Chem 248:2480-2486
8. Brickman TJ, Armstrong SK (1996) The ornithine decarboxylase gene odc is required for alcaligin siderophore biosynthesis in Bordetella spp.: putrescine is a precursor of alcaligin. J Bacteriol 178:54-60 (Pubitemid 26006065)
9. Buschke N, Schröder H, Wittmann C (2011) Metabolic engineering of Corynebacterium glutamicum for production of 1,5-diaminopentane from hemicellulose. Biotechnol J 6:306-317
10. Cacciapuoti G, Porcelli M, Moretti MA, Sorrentino F, Concilio L, Zappia V, Liu Z, Tempel W, Schubot F, Rose JP, Wang B, Brereton PS, Jenney FE, Adams MWW (2007) The first agmatine/cadaverine aminopropyl transferase: biochemical and structural characterization of an enzyme involved in polyamine biosynthesis in the hyperthermophilic archaeon Pyrococcus furiosus. J Bacteriol 189:6057-6067 (Pubitemid 47236158)
11. Chattopadhyay MK, Tabor CW, Tabor H (2009) Polyamines are not required for aerobic growth of Escherichia coli: preparation of a strain with deletions in all of the genes for polyamine biosynthesis. J Bacteriol 191:5549-5552
12. Driessen AJ, Smid EJ, Konings WN (1988) Transport of diamines by Enterococcus faecalis is mediated by an agmatine-putrescine antiporter. J Bacteriol 170:4522-4527
13. Eppelmann K, Nossin PMM, Kremer SM, Wubbolts MG (2006) Biochemical synthesis of 1,4-butanediamine. WO 2006005604
14. Filippou P, Lioliou E, Panagiotidis C, Athanassopoulos C, Garnelis T, Papaioannou D, Kyriakidis D (2007) Effect of polyamines and synthetic polyamine-analogues on the expression of antizyme (AtoC) and its regulatory genes. BMC Biochem 8:1
15. Foster JW (2004) Escherichia coli acid resistance: tales of an amateur acidophile. Nat Rev Micro 2:898-907
16. Fothergill JC, Guest JR (1977) Catabolism of L-lysine by Pseudomonas aeruginosa. J Gen Microbiol 99:139-155
17. Furuchi T, Kashiwagi K, Kobayashi H, Igarashi K (1991) Characteristics of the gene for a spermidine and putrescine transport system that maps at 15 min on the Escherichia coli chromosome. J Biol Chem 266:20928-20933 (Pubitemid 21908553)
18. Gong S, Richard H, Foster JW (2003) YjdE (AdiC) is the arginine: agmatine antiporter essential for arginine-dependent acid resistance in Escherichia coli. J Bacteriol 185:4402-4409 (Pubitemid 36890486)
19. Glansdorff N, Xu Y (2007) Microbial arginine biosynthesis: pathway, regulation and industrial production. In: Wendisch VF (ed) Amino acid biosynthesis - pathways, regulation and metabolic engineering. Springer, Berlin
20. Gunji Y, Yasueda H (2006) Enhancement of L-lysine production in methylotroph Methylophilus methylotrophus by introducing a mutant LysE exporter. J Biotechnol 127:1-13 (Pubitemid 46107119)
21. Hamana K, Matsuzaki S (1992) Polyamines as a chemotaxonomic marker in bacterial systematics. Crit Rev Microbiol 18:261-283
22. Higashi K, Ishigure H, Demizu R, Uemura T, Nishino K, Yamaguchi A, Kashiwagi K, Igarashi K (2008) Identification of a spermidine excretion protein complex (MdtJI) in Escherichia coli. J Bacteriol 190:872-878 (Pubitemid 351170930)
23. Hisano T, Abe S, Wakashiro M, Kimura A, Murata K (1990) Microbial spermidine dehydrogenase: purification and properties of the enzyme in Pseudomonas aeruginosa and Citrobacter freundii. J Ferment Bioeng 69:335-340 (Pubitemid 20300263)
24. Hofle MG (1984) Degradation of putrescine and cadaverine in seawater cultures by marine bacteria. Appl Environ Microbiol 47:843-849
25. Igarashi K, Kashiwagi K (2010) Characteristics of cellular polyamine transport in prokaryotes and eukaryotes. Plant Physiol Biochem 48:506-512
26. Jung IL, Oh TJ, Kim G (2003) Abnormal growth of polyamine-deficient Escherichia coli mutant is partially caused by oxidative stress-induced damage. Arch Biochem Biophys 418:125-132 (Pubitemid 37159379)
27. Kashiwagi K, Miyamoto S, Suzuki F, Kobayashi H, Igarashi K (1992) Excretion of putrescine by the putrescine-ornithine antiporter encoded by the potE gene of Escherichia coli. Proc Natl Acad Sci USA 89:4529-4533
28. Kashiwagi K, Shibuya S, Tomitori H, Kuraishi A, Igarashi K (1997) Excretion and uptake of putrescine by the PotE protein in Escherichia coli. J Biol Chem 272:6318-6323 (Pubitemid 27118106)
29. Kikuchi Y, Kojima H, Tanaka T, Takatsuka Y, Kamio Y (1997) Characterization of a second lysine decarboxylase isolated from Escherichia coli. J Bacteriol 179:4486-4492 (Pubitemid 27299064)
30. Kind S, Jeong WK, Schröder H, Zelder O, Wittmann C (2010a) Identification and elimination of the competing N-acetyldiaminopentane pathway for improved production of diaminopentane by Corynebacterium glutamicum. Appl Environ Microbiol 76:5175-5180
31. Kind S, Jeong WK, Schröder H, Wittmann C (2010b) Systems-wide metabolic pathway engineering in Corynebacterium glutamicum for bio-based production of diaminopentane. Metab Eng 12:341-351
32. Knott JM (2009) Biosynthesis of long-chain polyamines by crenarchaeal polyamine synthases from Hyperthermus butylicus and Pyrobaculum aerophilum. FEBS Lett 583:3519-3524
33. Kroschwitz JI, Seidel A (2004) Kirk-Othmer encyclopedia of chemical technology, 5th edn. Wiley-Interscience, Hoboken
34. Kurihara S, Suzuki H, Oshida M, Benno Y (2011) A novel putrescine importer required for type 1 pili-driven surface motility induced by extracellular putrescine in Escherichia coli K-12. J Biol Chem. doi:10.1074/jbc.M110.176032
35. Kurihara S, Oda S, Tsuboi Y, Kim HG, Oshida M, Kumagai H, Suzuki H (2008) Gamma-glutamylputrescine synthetase in the putrescine utilization pathway of Escherichia coli K-12. J Biol Chem 283:19981-19990
36. Kurihara S, Kato K, Asada K, Kumagai H, Suzuki H (2010) A putrescine-inducible pathway comprising PuuE-YneI in which gamma-aminobutyrate is degraded into succinate in Escherichia coli K-12. J Bacteriol 192:4582-4591
37. Kurihara S, Tsuboi Y, Oda S, Kim HG, Kumagai H, Suzuki H (2009) Putrescine importer PuuP of Escherichia coli K-12. J Bacteriol 191:2776-2782
38. Kurihara S, Oda S, Kato K, Kim HG, Koyanagi T, Kumagai H, Suzuki H (2005) A novel putrescine utilization pathway involves gamma-glutamylated intermediates of Escherichia coli K-12. J Biol Chem 280:4602-4608 (Pubitemid 40288628)
39. Lee J, Sperandio V, Frantz DE, Longgood J, Camilli A, Phillips MA, Michael AJ (2009) An alternative polyamine biosynthetic pathway is widespread in bacteria and essential for biofilm formation in Vibrio cholerae. J Biol Chem 284:9899-9907
40. Lee KH, Park JH, Kim TY, Kim HU, Lee SY (2007) Systems metabolic engineering of Escherichia coli for L-threonine production. Mol Syst Biol 3:149
41. Legrain C, Halleux P, Stalon V, Glansdorff N (1972) The dual genetic control of ornithine carbamoyltransferase in Escherichia coli: a case of bacterial hybrid enzymes. Eur J Biochem 27:93-102
42. Limsuwun K, Jones PG (2000) Spermidine acetyltransferase is required to prevent spermidine toxicity at low temperatures in Escherichia coli. J Bacteriol 182:5373-5380
43. Madduri K, Stuttard C, Vining LC (1989) Lysine catabolism in Streptomyces spp. is primarily through cadaverine: beta-lactam producers also make alpha-aminoadipate. J Bacteriol 171:299-302
44. Matsui I, Kamei M, Otani S, Morisawa S, Pegg AE (1982) Occurrence and induction of spermidine-N1-acetyltransferase in Escherichia coli. Biochem Biophys Res Commun 106:1155-1160 (Pubitemid 13214696)
45. Mimitsuka T, Sawai H, Hatsu M, Yamada K (2007) Metabolic engineering of Corynebacterium glutamicum for cadaverine fermentation. Biosci Biotechnol Biochem 71:2130-2135 (Pubitemid 350113121)
46. Miyamoto S, Kashiwagi K, Ito K, Watanabe S, Igarashi K (1993) Estimation of polyamine distribution and polyamine stimulation of protein synthesis in Escherichia coli. Arch Biochem Biophys 300:63-68 (Pubitemid 23225718)
47. Morimoto N, Fukuda W, Nakajima N, Msuda T, Terui Y, Kanai T, Oshima T, Imanaka T, Fujiwara S (2010) Dual biosynthesis pathway for longer-chain polyamines in the hyperthermophilic archaeon Thermococcus kodakarensis. J Bacteriol 192:4991-5001
48. Nakada Y, Itoh Y (2003) Identification of the putrescine biosynthetic genes in Pseudomonas aeruginosa and characterization of agmatine deiminase and N-carbamoylputrescine amidohydrolase of the arginine decarboxylase pathway. Microbiology 149:707-714 (Pubitemid 36395105)
49. Nakao H, Shinoda S, Yamamoto S (1991) Purification and some properties of carboxynorspermidine synthase participating in a novel biosynthetic pathway for norspermidine in Vibrio alginolyticus. Microbiology 137:1737-1742
50. Nakao H, Shinoda S, Yamamoto S (1990) Purification and properties of carboxynorspermidine decarboxylase, a novel enzyme involved in norspermidine biosynthesis, from Vibrio alginolyticus. Microbiology 136:1699-1704
51. Nandineni MR, Gowrishankar J (2004) Evidence for an arginine exporter encoded by yggA (argO) that is regulated by the LysR-Type transcriptional regulator ArgP in Escherichia coli. J Bacteriol 186:3539-3546 (Pubitemid 38661552)
52. Nishi K, Endo S, Mori Y, Totsuka K, Hirao Y (2007) Method for producing cadaverine dicarboxylate. US 7189543 B2
53. Ohnuma M, Terui Y, Tamakoshi M, Mitome H, Niitsu M, Samejima K, Kawashima E, Oshima T (2005) N1-aminopropylagmatine, a new polyamine produced as a key intermediate in polyamine biosynthesis of an extreme thermophile, Thermus thermophilus. J Biol Chem 280:30073-30082 (Pubitemid 41216183)
54. Oshima T (2007) Unique polyamines produced by an extreme thermophile, Thermus thermophilus. Amino Acids 33:367-372
55. Oshima T (2010) Enigmas of biosyntheses of unusual polyamines in an extreme thermophile, Thermus thermophilus. Plant Physiol Biochem 48:521-526
56. Park JH, Lee SY (2010) Metabolic pathways and fermentative production of L-aspartate family amino acids. Biotechnol J 5:560-577
57. Patel CN, Wortham BW, Lines JL, Fetherston JD, Perry RD, Oliveira MA (2006) Polyamines are essential for the formation of plague biofilm. J Bacteriol 188:2355-2363
58. Paulin L, Ruohola H, Nykänen I, Pösö H (1983) The incorporation of 1,3-diaminopropane into thermine by an extreme thermophile: a novel route for the biosynthesis of polyamines. FEMS Microbiol Lett 19:299-302 (Pubitemid 14225991)
59. Peters-Wendisch PG, Schiel B, Wendisch VF, Katsoulidis E, Möckel B, Sahm H, Eikmanns BJ (2001) Pyruvate carboxylase is a major bottleneck for glutamate and lysine production by Corynebacterium glutamicum. J Mol Microbiol Biotechnol 3:295-300 (Pubitemid 32257916)
60. Peters-Wendisch PG, Kreutzer C, Kalinowski J, Pátek M, Sahm H, Eikmanns BJ (1998) Pyruvate carboxylase from Corynebacterium glutamicum: characterization, expression and inactivation of the pyc gene. Microbiology 144:915-927 (Pubitemid 28187917)
61. Pistocchi R, Kashiwagi K, Miyamoto S, Nukui E, Sadakata Y, Kobayashi H, Igarashi K (1993) Characteristics of the operon for a putrescine transport system that maps at 19 minutes on the Escherichia coli chromosome. J Biol Chem 268:146-152 (Pubitemid 23021297)
62. Platt DK (2003) Engineering and high performance plastics market report. A Rapra market report. Rapra Technology Ltd., Shawbury
63. Qian Z, Xia X, Lee SY (2009) Metabolic engineering of Escherichia coli for the production of putrescine: a four carbon diamine. Biotechnol Bioeng 104:651-662
64. Qian Z, Xia X, Lee SY (2011) Metabolic engineering of Escherichia coli for the production of cadaverine: a five carbon diamine. Biotechnol Bioeng 108:93-103
65. Ren Q, Paulsen IT (2005) Comparative analyses of fundamental differences in membrane transport capabilities in prokaryotes and eukaryotes. PLoS Comp Biol 1:e27
66. Revelles O, Espinosa-Urgel M, Fuhrer T, Sauer U, Ramos JL (2005) Multiple and interconnected pathways for L-lysine catabolism in Pseudomonas putida KT2440. J Bacteriol 187:7500-7510 (Pubitemid 41507806)
67. Riedel C, Rittmann D, Dangel P, Möckel B, Petersen S, Sahm H, Eikmanns BJ (2001) Characterization of the phosphoenolpyruvate carboxykinase gene from Corynebacterium glutamicum and significance of the enzyme for growth and amino acid production. J Mol Microbiol Biotechnol 3:573-583 (Pubitemid 32791418)
68. Rosen BP (1971) Basic amino acid transport in Escherichia coli. J Biol Chem 246:3653-3662
69. Sabo DL, Boeker EA, Byers B, Waron H, Fischer EH (1974) Purification and physical properties of inducible Escherichia coli lysine decarboxylase. Biochemistry 13:662-670
70. Satishchandran C, Boyle SM (1986) Purification and properties of agmatine ureohydrolyase, a putrescine biosynthetic enzyme in Escherichia coli. J Bacteriol 165:843-848 (Pubitemid 16071414)
71. Schneider J, Wendisch VF (2010) Putrescine production by engineered Corynebacterium glutamicum. Appl Microbiol Biotechnol 88:859-868
72. Seep-Feldhaus AH, Kalinowski J, Pühler A (1991) Molecular analysis of the Corynebacterium glutamicum lysl gene involved in lysine uptake. Mol Microbiol 5:2995-3005 (Pubitemid 21896032)
73. Seiler N (2004) Catabolism of polyamines. Amino Acids 26:217-233
74. Seiler N (1990) Polyamine metabolism. Digestion 46:319-330
75. Sekowska A, Danchin A (2002) The methionine salvage pathway in Bacillus subtilis. BMC Microbiol 2:8
76. Shaibe E, Metzer E, Halpern YS (1985) Metabolic pathway for the utilization of L-arginine, L-ornithine, agmatine, and putrescine as nitrogen sources in Escherichia coli K-12. J Bacteriol 163:933-937 (Pubitemid 15230725)
77. Shimizu H, Hirasawa T (2007) Production of glutamate and glutamate-related amino acids: molecular mechanism analysis and metabolic engineering. In: Wendisch VF (ed) Amino acid biosynthesis - pathways, regulation and metabolic engineering. Springer, Berlin
78. Soksawatmaekhin W, Kuraishi A, Sakata K, Kashiwagi K, Igarashi K (2004) Excretion and uptake of cadaverine by CadB and its physiological functions in Escherichia coli. Mol Microbiol 51:1401-1412 (Pubitemid 38338901)
79. Steffes C, Ellis J, Wu J, Rosen BP (1992) The lysP gene encodes the lysine-specific permease. J Bacteriol 174:3242-3249
80. Stäbler N, Oikawa T, Bott M, Eggeling L (2011) Corynebacterium glutamicum as a host for synthesis and export of D-amino acids. J Bacteriol 193:1702-1709
81. Sturgill G, Rather PN (2004) Evidence that putrescine acts as an extracellular signal required for swarming in Proteus mirabilis. Mol Microbiol 51:437-446 (Pubitemid 38142132)
82. Suzuki O, Ishikawa Y, Miyazaki K, Izu K, Matsumoto T (1986) Acetylputrescine deacetylase from Micrococcus luteus K-11. Biochim Biophys Acta Gen Subj 882:140-142 (Pubitemid 16040774)
83. Tabor CW, Tabor H (1985) Polyamines in microorganisms. Microbiol Rev 49:81-99 (Pubitemid 15134122)
84. Tait GH (1976) A new pathway for the biosynthesis of spermidine. Biochem Soc Trans 4:610-612
85. Tait GH (1979) The formation of homospermidine by an enzyme from Rhodopseudomonas viridis. Biochem Soc Trans 7:199-201
86. Takatsuka Y, Kamio Y (2004) Molecular dissection of the Selenomonas ruminantium cell envelope and lysine decarboxylase involved in the biosynthesis of a polyamine covalently linked to the cell wall peptidoglycan layer. Biosci Biotechnol Biochem 68:1-19 (Pubitemid 39251558)
87. Tateno T, Okada Y, Tsuchidate T, Tanaka T, Fukuda H, Kondo A (2008) Direct production of cadaverine from soluble starch using Corynebacterium glutamicum coexpressing alpha-amylase and lysine decarboxylase. Appl Microbiol Biotechnol 82:115-121
88. van Hellemond EW, van Dijk M, Heuts DPHM, Janssen DB, Fraaije MW (2008) Discovery and characterization of a putrescine oxidase from Rhodococcus erythropolis NCIMB 11540. Appl Microbiol Biotechnol 78:455-463
89. Verseck S, Häger H, Karau A, Eggeling L, Sahm H (2008) Verfahren zur fermentativen Herstellung von Cadaverin. DE 102007005072 A1
90. Völkert M, Zelder O, Ernst B, Jeong WK (2010) Method for fermentatively producing 1,5-diaminopentane. US 20100292429 A1
91. Vrljic M, Sahm H, Eggeling L (1996) A new type of transporter with a new type of cellular function: L-lysine export from Corynebacterium glutamicum. Mol Microbiol 22:815-826 (Pubitemid 26411327)
92. Vrljic M, Garg J, Bellmann A, Wachi S, Freudl R, Malecki MJ, Sahm H, Kozina VJ, Eggeling L, Saier MH (1999) The LysE superfamily: topology of the lysine exporter LysE of Corynebacterium glutamicum, a paradyme for a novel superfamily of transmembrane solute translocators. J Mol Microbiol Biotechnol 1:327-336 (Pubitemid 129491953)
93. Wallace HM, Fraser AV, Hughes A (2003) A perspective of polyamine metabolism. Biochem J 376:1-14 (Pubitemid 37487199)
94. Wargnies B, Lauwers N, Stalon V (1979) Structure and properties of the putrescine carbamoyltransferase of Streptococcus faecalis. Eur J Biochem 101:143-152 (Pubitemid 10163528)
95. Wittmann C, Becker J (2007) The L-lysine story: from metabolic pathways to industrial production. In: Wendisch VF (ed) Amino acid biosynthesis - pathways, regulation andmetabolic engineering. Springer, Berlin
96. Wissenbach U, Six S, Bongaerts J, Ternes D, Steinwachs S, Unden G (1995) A third periplasmic transport system for L-arginine in Escherichia coli: molecular characterization of the artPIQMJ genes, arginine binding and transport. Mol Microbiol 17:675-686
97. Wu WH, Morris DR (1973) Biosynthetic arginine decarboxylase from Escherichia coli: subunit interactions and the role of magnesium ion. J Biol Chem 248:1696-1699
98. Yamamoto S, Hamanaka K, Suemoto Y, Ono B, Shinoda S (1986) Evidence for the presence of a novel biosynthetic pathway for norspermidine in Vibrio. Can J Microbiol 32:99-103 (Pubitemid 16115571)