Elemental profiling of single bacterial cells as a function of copper exposure and growth phase

PLoS ONE

Volumn 6, Issue 6, 2011, Pages

  Yu, Ran ^a,c   Lai, Barry ^b   Vogt, Stefan ^b   Chandran, Kartik ^a  

^a Department of Earth and Environmental Sciences   (United States)

^b ARGONNE NATIONAL LABORATORY   (United States)

^c SOUTHEAST UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

AMMONIA MONOOXYGENASE; COPPER; IRON; UNCLASSIFIED DRUG; UNSPECIFIC MONOOXYGENASE;

ARTICLE; BACTERIAL CELL; BACTERIUM CULTURE; CATALYSIS; CONTROLLED STUDY; ELECTRON TRANSPORT; GROWTH CURVE; MICROSCOPY; NITROSOMONAS EUROPAEA; NONHUMAN; OXYGEN CONSUMPTION; PSEUDOMONAS FLUORESCENS; SINGLE CELL ANALYSIS; X RAY FLUORESCENCE; X RAY FLUORESCENCE MICROSCOPY; BACTERIUM; DRUG EFFECT; FLUORESCENCE MICROSCOPY; GENE EXPRESSION REGULATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; METHODOLOGY; X RAY;

BACTERIA (MICROORGANISMS); NITROSOMONAS EUROPAEA; PSEUDOMONAS FLUORESCENS;

BACTERIA; COPPER; GENE EXPRESSION REGULATION, BACTERIAL; MICROSCOPY, FLUORESCENCE; X-RAYS;

EID: 79959255876     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0021255     Document Type: Article

References (33)

1. Madigan MT, Martinko JM, (2006) Brock Biology of Microorganisms Upper Saddle River, NJ Prentice Hall.
2. Finney LA, O'Halloran TV, (2003) Transition metal speciation in the cell: Insights from the chemistry of metal ion receptors. Science 300: 931-936.
3. Outten CE, O'Halloran TV, (2001) Femtomolar sensitivity of metalloregulatory proteins controlling zinc homeostasis. Science 292: 2488-2492.
4. Hu Z, Chandran K, Grasso D, Smets BF, (2003) Impact of metal sorption and internalization on nitrification inhibition. Environ Sci Technol 37: 728-734.
5. Kemner KM, Kelly SD, Lai B, Maser J, O'Loughlin EJO, et al. (2004) Elemental and redox analysis of single bacterial cells by X-ray microbeam analysis. Science 306: 686-687.
6. Hofman T, Lees H, (1952) The biochemistry of nitrifying organisms. 2. The free energy efficiency of Nitrosomonas. Biochem J 52: 140-142.
7. Hooper AB, Terry KR, (1973) Specific inhibitors of ammonia oxidation in Nitrosomonas. J Bacteriol 115: 480-485.
8. Lees H, (1952) The biochemistry of the nitrifying organisms 1. The ammonia-oxidizing systems of Nitrosomonas. Biochem J 52: 134-139.
9. Chain P, Lamerdin J, Larimer F, Regala W, Lao V, et al. (2003) Complete genome sequence of the ammonia-oxidizing bacterium and obligate chemolithoautotroph Nitrosomonas europaea. J Bacteriol 185: 2759-2773.
10. Chandran K, Love NG, (2008) Physiological state, growth mode, and oxidative stress play a role in Cd(II)-mediated inhibition of Nitrosomonas europaea 19718. Appl Environ Microbiol 74: 2447-2453.
11. Hagen PO, Goldfine H, Williams PJlB, (1966) Phospholipids of bacteria with extensive intracytoplasmic membranes. Science 151: 1543-1544.
12. Mattie MD, Freedman JH, (2004) Copper-inducible transcription: regulation by metal- and oxidative stress responsive pathways. Am J Physiol Cel Physiol 286: C293-301.
13. Chandran K, Smets BF, (2000) Applicability of two-step models in estimating nitrification kinetics from batch respirograms under different relative dynamics of ammonia and nitrite oxidation. Biotechnol Bioeng 70: 54-64.
14. Chandran K, Smets BF, (2005) Optimizing experimental design to estimate ammonia and nitrite oxidation biokinetic parameters from batch respirograms. Water Res 39: 4969-4978.
15. Ensign SA, Hyman MR, Arp DJ, (1993) In vitro activation of ammonia monooxygenase from Nitrosomonas europaea by copper. J Bacteriol 175: 1971-1980.
16. Nielsen AK, Gerdes K, Murrell JC, (1997) Copper-dependent reciprocal transcriptional regulation of methane monooxygenase genes in Methylococcus capsulatus and Methylosinus trichosporium. Mol Microbiol 25: 399-409.
17. Holmes AJ, Costello A, Lidstrom ME, Murrell JC, (1995) Evidence that particulate methane monooxygenase and ammonia monooxygenase may be evolutionarily related. FEMS Microbiol Lett 132: 203-208.
18. Sunda WG, Swift DG, Huntsman SA, (1991) Low iron requirement for growth in oceanic phytoplankton. Nature 351: 55-57.
19. Yu R, Chandran K, (2010) Strategies of Nitrosomonas europaea 19718 to counter low dissolved oxygen and high nitrite concentrations. BMC Microbiology 10: 70.
20. Yu R, Kampschreur MJ, van Loosdrecht MCM, Chandran K, (2010) Mechanisms and specific directionality of autotrophic nitrous oxide and nitric oxide generation during transient anoxia. Environ Sci Technol 44: 1313-1319.
21. Ahn J-H, Kwan T, Chandran K, (2011) A comparison of partial and full nitrification processes applied for treating high-strength nitrogen wastewaters: Microbial ecology through nitrous oxide production. Environ Sci Technol 45: 2734-2740.
22. Airoldi EM, Huttenhower C, Gresham D, Lu C, Caudy AA, et al. (2009) Predicting cellular growth from gene expression signatures. PLoS Comput Biol 5: e1000257.
23. Park H, Rosenthal A, Jezek R, Ramalingam K, Fillos J, et al. (2010) Linking community profiles, gene expression and N-removal in anammox bioreactors treating municipal anaerobic digestion reject water. Environ Sci Technol 44: 6110-6116.
24. Sato C, Schnoor JL, McDonald DB, (1986) Effects of copper and nickel on the growth of Nitrosomonas europaea. Tox Assessmt 1: 357-376.
25. Sato C, Leung SW, Schnoor JL, (1988) Toxic response of Nitrosomonas europaea to copper in inorganic medium and wastewater. Water Res 22: 1117-1127.
26. Park S, Ely RL, (2008) Candidate stress genes of Nitrosomonas europaea for monitoring inhibition of nitrification by heavy metals. Appl Environ Microbiol 74: 5475-5482.
27. Massieux B, Boivin MEY, van den Ende FP, Langenskiold J, Marvan P, et al. (2004) Analysis of structural and physiological profiles to assess the effects of Cu on biofilm microbial communities. Appl Environ Microbiol 70: 4512-4521.
28. Teitzel GM, Geddie A, De Long SK, Kirisits MJ, Whiteley M, et al. (2006) Survival and growth in the presence of elevated copper: Transcriptional profiling of copper-stressed Pseudomonas aeruginosa. J Bacteriol 188: 7242-7256.
29. Harrison JJ, Turner RJ, Joo DA, Stan MA, Chan CS, et al. (2008) Copper and quaternary ammonium cations exert synergistic bactericidal and antibiofilm activity against Pseudomonas aeruginosa. Antimicrob Agents Chemother 52: 2870-2881.
30. Bedard C, Knowles R, (1989) Physiology, biochemistry and specific inhibitors of CH4, NH4+ and CO oxidation by methanotrophs and nitrifiers. Microbiol Rev 53: 68-84.
31. DiSpirito AA, Taaffe LR, Lipscomb JD, Hooper AB, (1985) A 'blue' copper oxidase from Nitrosomonas europaea. Biochim Biophys Acta 827: 320-326.
32. Eaton AD, Clesceri LS, Greenberg AE, eds. (2005) Standard Methods for the Examination of Water and Wastewater. 21 ed Washington DC APHA, AWWA and WEF.
33. Vogt S, (2003) MAPS: A set of software tools for analysis and visualization of 3D X-ray fluorescence data sets. J Phys IV France 104: 635-638.