메뉴 건너뛰기




Volumn 51, Issue 3, 2011, Pages 186-191

HIV-1 genetic diversity and drug resistance among treatment naïve patients from Southern Brazil: An association of HIV-1 subtypes with exposure categories

Author keywords

Drug resistance mutations; HIV 1; Molecular epidemiology; Southern Brazil

Indexed keywords

INTEGRASE; PROTEINASE; RNA DIRECTED DNA POLYMERASE; VIRUS ENZYME;

EID: 79959253276     PISSN: 13866532     EISSN: 18735967     Source Type: Journal    
DOI: 10.1016/j.jcv.2011.04.011     Document Type: Article
Times cited : (37)

References (39)
  • 3
    • 12944259137 scopus 로고    scopus 로고
    • HIV-1 diversity in Brazil: genetic, biologic, and immunologic characterization of HIV-1 strains in three potential HIV vaccine evaluation sites. Brazilian Network for HIV isolation and characterization
    • Bongertz V., Bou-Habib D.C., Brigido L.F., Caseiro M., Chequer P.J., Couto-Fernandez J.C., et al. HIV-1 diversity in Brazil: genetic, biologic, and immunologic characterization of HIV-1 strains in three potential HIV vaccine evaluation sites. Brazilian Network for HIV isolation and characterization. J Acquir Immune Defic Syndr 2000, 23(2):184-193.
    • (2000) J Acquir Immune Defic Syndr , vol.23 , Issue.2 , pp. 184-193
    • Bongertz, V.1    Bou-Habib, D.C.2    Brigido, L.F.3    Caseiro, M.4    Chequer, P.J.5    Couto-Fernandez, J.C.6
  • 4
    • 0037541205 scopus 로고    scopus 로고
    • Brazilian Network for HIV Drug Resistance Surveillance (HIV-BResNet): a survey of chronically infected individuals
    • Brindeiro R.M., Diaz R.S., Sabino E.C., Morgado M.G., Pires I.L., Brigido L., et al. Brazilian Network for HIV Drug Resistance Surveillance (HIV-BResNet): a survey of chronically infected individuals. AIDS 2003, 17(7):1063-1069.
    • (2003) AIDS , vol.17 , Issue.7 , pp. 1063-1069
    • Brindeiro, R.M.1    Diaz, R.S.2    Sabino, E.C.3    Morgado, M.G.4    Pires, I.L.5    Brigido, L.6
  • 5
    • 0142245380 scopus 로고    scopus 로고
    • Molecular epidemiology of human immunodeficiency virus-1 in the state of Ceara, Northeast, Brazil
    • Gadelha S.R., Shindo N., Cruz J.N., Morgado M.G., Galvao-Castro B. Molecular epidemiology of human immunodeficiency virus-1 in the state of Ceara, Northeast, Brazil. Mem Inst Oswaldo Cruz 2003, 98(4):461-463.
    • (2003) Mem Inst Oswaldo Cruz , vol.98 , Issue.4 , pp. 461-463
    • Gadelha, S.R.1    Shindo, N.2    Cruz, J.N.3    Morgado, M.G.4    Galvao-Castro, B.5
  • 8
    • 69649093344 scopus 로고    scopus 로고
    • HIV-1 pol phylogenetic diversity and antiretroviral resistance mutations in treatment naive patients from Central West Brazil
    • Cardoso L.P., Queiroz B.B., Stefani M.M. HIV-1 pol phylogenetic diversity and antiretroviral resistance mutations in treatment naive patients from Central West Brazil. J Clin Virol 2009, 46(2):134-139.
    • (2009) J Clin Virol , vol.46 , Issue.2 , pp. 134-139
    • Cardoso, L.P.1    Queiroz, B.B.2    Stefani, M.M.3
  • 9
    • 70449461386 scopus 로고    scopus 로고
    • Molecular epidemiology of HIV type 1 in northern Brazil: identification of subtypes C and D and the introduction of CRF02_AG in the Amazon region of Brazil
    • Machado L.F., Ishak M.O., Vallinoto A.C., Lemos J.A., Azevedo V.N., Moreira M.R., et al. Molecular epidemiology of HIV type 1 in northern Brazil: identification of subtypes C and D and the introduction of CRF02_AG in the Amazon region of Brazil. AIDS Res Hum Retroviruses 2009, 25(10):961-966.
    • (2009) AIDS Res Hum Retroviruses , vol.25 , Issue.10 , pp. 961-966
    • Machado, L.F.1    Ishak, M.O.2    Vallinoto, A.C.3    Lemos, J.A.4    Azevedo, V.N.5    Moreira, M.R.6
  • 11
    • 32344441696 scopus 로고    scopus 로고
    • Low prevalence of primary antiretroviral resistance mutations and predominance of HIV-1 clade C at polymerase gene in newly diagnosed individuals from south Brazil
    • Rodrigues R., Scherer L.C., Oliveira C.M., Franco H.M., Sperhacke R.D., Ferreira J.L., et al. Low prevalence of primary antiretroviral resistance mutations and predominance of HIV-1 clade C at polymerase gene in newly diagnosed individuals from south Brazil. Virus Res 2006, 116(1-2):201-207.
    • (2006) Virus Res , vol.116 , Issue.1-2 , pp. 201-207
    • Rodrigues, R.1    Scherer, L.C.2    Oliveira, C.M.3    Franco, H.M.4    Sperhacke, R.D.5    Ferreira, J.L.6
  • 13
    • 37549072313 scopus 로고    scopus 로고
    • HIV type 1 subtype C and CB Pol recombinants prevail at the cities with the highest AIDS prevalence rate in Brazil
    • Brigido L.F., Nunes C.C., Oliveira C.M., Knoll R.K., Ferreira J.L., Freitas C.A., et al. HIV type 1 subtype C and CB Pol recombinants prevail at the cities with the highest AIDS prevalence rate in Brazil. AIDS Res Hum Retroviruses 2007, 23(12):1579-1586.
    • (2007) AIDS Res Hum Retroviruses , vol.23 , Issue.12 , pp. 1579-1586
    • Brigido, L.F.1    Nunes, C.C.2    Oliveira, C.M.3    Knoll, R.K.4    Ferreira, J.L.5    Freitas, C.A.6
  • 14
    • 34548290957 scopus 로고    scopus 로고
    • Molecular epidemiology of HIV-1 in Santa Catarina State confirms increases of subtype C in Southern Brazil
    • Locateli D., Stoco P.H., de Queiroz A.T., Alcantara L.C., Ferreira L.G., Zanetti C.R., et al. Molecular epidemiology of HIV-1 in Santa Catarina State confirms increases of subtype C in Southern Brazil. J Med Virol 2007, 79(10):1455-1463.
    • (2007) J Med Virol , vol.79 , Issue.10 , pp. 1455-1463
    • Locateli, D.1    Stoco, P.H.2    de Queiroz, A.T.3    Alcantara, L.C.4    Ferreira, L.G.5    Zanetti, C.R.6
  • 15
    • 58049176428 scopus 로고    scopus 로고
    • Molecular characterisation of newly identified HIV-1 infections in Curitiba, Brazil: preponderance of clade C among males with recent infections
    • Ferreira J.L., Thomaz M., Rodrigues R., Harrad D., Oliveira C.M., Oliveira C.A., et al. Molecular characterisation of newly identified HIV-1 infections in Curitiba, Brazil: preponderance of clade C among males with recent infections. Mem Inst Oswaldo Cruz 2008, 103(8):800-808.
    • (2008) Mem Inst Oswaldo Cruz , vol.103 , Issue.8 , pp. 800-808
    • Ferreira, J.L.1    Thomaz, M.2    Rodrigues, R.3    Harrad, D.4    Oliveira, C.M.5    Oliveira, C.A.6
  • 16
    • 77950212573 scopus 로고    scopus 로고
    • Young pregnant women living with HIV/AIDS in Criciuma, Southern Brazil, are infected almost exclusively with HIV type 1 clade C
    • Rodrigues R., Manenti S., Romao P.R., de Paula Ferreira J.L., Batista J.P., Siqueira A.F., et al. Young pregnant women living with HIV/AIDS in Criciuma, Southern Brazil, are infected almost exclusively with HIV type 1 clade C. AIDS Res Hum Retroviruses 2010, 26(3):351-357.
    • (2010) AIDS Res Hum Retroviruses , vol.26 , Issue.3 , pp. 351-357
    • Rodrigues, R.1    Manenti, S.2    Romao, P.R.3    de Paula Ferreira, J.L.4    Batista, J.P.5    Siqueira, A.F.6
  • 18
    • 79951702447 scopus 로고    scopus 로고
    • Brazilian Network for HIV Drug Resistance Surveillance: a survey of individuals recently diagnosed with HIV
    • Inocencio L.A., Pereira A.A., Sucupira M.C., Fernandez J.C., Jorge C.P., Souza D.F., et al. Brazilian Network for HIV Drug Resistance Surveillance: a survey of individuals recently diagnosed with HIV. J Int AIDS Soc 2009, 12(1):20.
    • (2009) J Int AIDS Soc , vol.12 , Issue.1 , pp. 20
    • Inocencio, L.A.1    Pereira, A.A.2    Sucupira, M.C.3    Fernandez, J.C.4    Jorge, C.P.5    Souza, D.F.6
  • 20
    • 33947153983 scopus 로고    scopus 로고
    • High levels of primary antiretroviral resistance genotypic mutations and B/F recombinants in Santos, Brazil
    • Sucupira M.C., Caseiro M.M., Alves K., Tescarollo G., Janini L.M., Sabino E.C., et al. High levels of primary antiretroviral resistance genotypic mutations and B/F recombinants in Santos, Brazil. AIDS Patient Care STDS 2007, 21(2):116-128.
    • (2007) AIDS Patient Care STDS , vol.21 , Issue.2 , pp. 116-128
    • Sucupira, M.C.1    Caseiro, M.M.2    Alves, K.3    Tescarollo, G.4    Janini, L.M.5    Sabino, E.C.6
  • 22
    • 34249905472 scopus 로고    scopus 로고
    • High prevalence of primary antiretroviral resistance among HIV-1-infected adults and children in Bahia, a northeast state of Brazil
    • Pedroso C., Queiroz A.T., Alcantara L.C., Drexler J.F., Diaz R.S., Weyll N., et al. High prevalence of primary antiretroviral resistance among HIV-1-infected adults and children in Bahia, a northeast state of Brazil. J Acquir Immune Defic Syndr 2007, 45(2):251-253.
    • (2007) J Acquir Immune Defic Syndr , vol.45 , Issue.2 , pp. 251-253
    • Pedroso, C.1    Queiroz, A.T.2    Alcantara, L.C.3    Drexler, J.F.4    Diaz, R.S.5    Weyll, N.6
  • 23
    • 0028943178 scopus 로고
    • Genetic subtyping of human immunodeficiency virus using a heteroduplex mobility assay
    • Delwart E.L., Herring B., Rodrigo A.G., Mullins J.I. Genetic subtyping of human immunodeficiency virus using a heteroduplex mobility assay. PCR Methods Appl 1995, 4(5):S202-S216.
    • (1995) PCR Methods Appl , vol.4 , Issue.5
    • Delwart, E.L.1    Herring, B.2    Rodrigo, A.G.3    Mullins, J.I.4
  • 25
    • 68649096601 scopus 로고    scopus 로고
    • Genetic characterization of HIV-1 BC recombinants and evolutionary history of the CRF31_BC in Southern Brazil
    • Passaes C.P., Bello G., Lorete R.S., Matos Almeida S.E., Junqueira D.M., Veloso V.G., et al. Genetic characterization of HIV-1 BC recombinants and evolutionary history of the CRF31_BC in Southern Brazil. Infect Genet Evol 2009, 9(4):474-482.
    • (2009) Infect Genet Evol , vol.9 , Issue.4 , pp. 474-482
    • Passaes, C.P.1    Bello, G.2    Lorete, R.S.3    Matos Almeida, S.E.4    Junqueira, D.M.5    Veloso, V.G.6
  • 26
    • 0027968068 scopus 로고
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 1994, 22(22):4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , Issue.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 27
    • 0027157960 scopus 로고
    • Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees
    • Tamura K., Nei M. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol 1993, 10(3):512-526.
    • (1993) Mol Biol Evol , vol.10 , Issue.3 , pp. 512-526
    • Tamura, K.1    Nei, M.2
  • 28
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • Tamura K., Dudley J., Nei M., Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 2007, 24(8):1596-1599.
    • (2007) Mol Biol Evol , vol.24 , Issue.8 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 29
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 1980, 16(2):111-120.
    • (1980) J Mol Evol , vol.16 , Issue.2 , pp. 111-120
    • Kimura, M.1
  • 30
    • 0032889281 scopus 로고    scopus 로고
    • Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination
    • Lole K.S., Bollinger R.C., Paranjape R.S., Gadkari D., Kulkarni S.S., Novak N.G., et al. Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination. J Virol 1999, 73(1):152-160.
    • (1999) J Virol , vol.73 , Issue.1 , pp. 152-160
    • Lole, K.S.1    Bollinger, R.C.2    Paranjape, R.S.3    Gadkari, D.4    Kulkarni, S.S.5    Novak, N.G.6
  • 31
    • 62749200513 scopus 로고    scopus 로고
    • Drug resistance mutations for surveillance of transmitted HIV-1 drug-resistance: 2009 update
    • Bennett D.E., Camacho R.J., Otelea D., Kuritzkes D.R., Fleury H., Kiuchi M., et al. Drug resistance mutations for surveillance of transmitted HIV-1 drug-resistance: 2009 update. PLoS One 2009, 4(3):e4724.
    • (2009) PLoS One , vol.4 , Issue.3
    • Bennett, D.E.1    Camacho, R.J.2    Otelea, D.3    Kuritzkes, D.R.4    Fleury, H.5    Kiuchi, M.6
  • 32
    • 33845943963 scopus 로고    scopus 로고
    • HIV-1 protease and reverse transcriptase mutations for drug resistance surveillance
    • Shafer R.W., Rhee S.Y., Pillay D., Miller V., Sandstrom P., Schapiro J.M., et al. HIV-1 protease and reverse transcriptase mutations for drug resistance surveillance. AIDS 2007, 21(2):215-223.
    • (2007) AIDS , vol.21 , Issue.2 , pp. 215-223
    • Shafer, R.W.1    Rhee, S.Y.2    Pillay, D.3    Miller, V.4    Sandstrom, P.5    Schapiro, J.M.6
  • 36
    • 34447263572 scopus 로고    scopus 로고
    • Natural polymorphism of the HIV-1 integrase gene and mutations associated with integrase inhibitor resistance
    • Lataillade M., Chiarella J., Kozal M.J. Natural polymorphism of the HIV-1 integrase gene and mutations associated with integrase inhibitor resistance. Antivir Ther 2007, 12(4):563-570.
    • (2007) Antivir Ther , vol.12 , Issue.4 , pp. 563-570
    • Lataillade, M.1    Chiarella, J.2    Kozal, M.J.3
  • 37
    • 52749086245 scopus 로고    scopus 로고
    • Natural variation of HIV-1 group M integrase: implications for a new class of antiretroviral inhibitors
    • Rhee S.Y., Liu T.F., Kiuchi M., Zioni R., Gifford R.J., Holmes S.P., et al. Natural variation of HIV-1 group M integrase: implications for a new class of antiretroviral inhibitors. Retrovirology 2008, 5(8):74.
    • (2008) Retrovirology , vol.5 , Issue.8 , pp. 74
    • Rhee, S.Y.1    Liu, T.F.2    Kiuchi, M.3    Zioni, R.4    Gifford, R.J.5    Holmes, S.P.6
  • 38
    • 77957875432 scopus 로고    scopus 로고
    • Specific HIV-1 integrase polymorphisms change their prevalence in untreated versus antiretroviral-treated HIV-1-infected patients, all naive to integrase inhibitors
    • Ceccherini-Silberstein F., Malet I., Fabeni L., Dimonte S., Svicher V., D'Arrigo R., et al. Specific HIV-1 integrase polymorphisms change their prevalence in untreated versus antiretroviral-treated HIV-1-infected patients, all naive to integrase inhibitors. J Antimicrob Chemother 2010, 65(11):2305-2318.
    • (2010) J Antimicrob Chemother , vol.65 , Issue.11 , pp. 2305-2318
    • Ceccherini-Silberstein, F.1    Malet, I.2    Fabeni, L.3    Dimonte, S.4    Svicher, V.5    D'Arrigo, R.6
  • 39
    • 70350743150 scopus 로고    scopus 로고
    • HIV-1 vaccine clinical trials: the Brazilian experience
    • Ersching J., Pinto A.R. HIV-1 vaccine clinical trials: the Brazilian experience. Rev Med Virol 2009, 19(5):301-311.
    • (2009) Rev Med Virol , vol.19 , Issue.5 , pp. 301-311
    • Ersching, J.1    Pinto, A.R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.