SLA-DRB1 and -DQB1 genotyping by the PCR-SSOP-Luminex method

Tissue Antigens

Volumn 78, Issue 1, 2011, Pages 49-55

  Ando, A ^a   Shigenari, A ^a   Ota, M ^b   Sada, M ^c   Kawata, H ^a   Azuma, F ^d   Kojima Shibata, C ^e   Nakajoh, M ^e   Suzuki, K ^f   Uenishi, H ^g   Kulski, J K ^a,h   Inoko, Hidetoshi ^a  

^a TOKAI UNIVERSITY SCHOOL OF MEDICINE   (Japan)

^b SHINSHU UNIVERSITY SCHOOL OF MEDICINE   (Japan)

^c NATIONAL CEREBRAL AND CARDIOVASCULAR CENTER   (Japan)

^d Medical & Biological Laboratories Co Ltd   (Japan)

^e Miyagi Livestock Experimental Station   (Japan)

^f TOHOKU UNIVERSITY   (Japan)

^g NATIONAL INSTITUTE OF AGROBIOLOGICAL SCIENCES   (Japan)

^h UNIVERSITY OF WESTERN AUSTRALIA   (Australia)

Author keywords

Genotyping; Luminex method; Major histocompatibility complex; Polymerase chain reaction sequence specific oligonucleotide probe; Swine; Swine leukocyte antigen

Indexed keywords

ANTIGEN; FLUORESCENT DYE; MICROSPHERE; SWINE LEUKOCYTE ANTIGEN; SWINE LEUKOCYTE ANTIGEN DQB1; SWINE LEUKOCYTE ANTIGEN DRB1; UNCLASSIFIED DRUG;

ACCURACY; ALLELE; ARTICLE; GENE LOCUS; GENOTYPE; HAPLOTYPE; HETEROZYGOSITY; HOMOZYGOSITY; LUMINEX METHOD; NONHUMAN; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SEQUENCE SPECIFIC OLIGONUCLEOTIDE PROBE; SWINE;

ANIMALS; GENE FREQUENCY; GENETIC LOCI; GENOTYPE; HISTOCOMPATIBILITY ANTIGENS CLASS II; HISTOCOMPATIBILITY TESTING; OLIGONUCLEOTIDE PROBES; POLYMERASE CHAIN REACTION; SUBSTRATE SPECIFICITY; SWINE;

SUIDAE;

EID: 79958771974     PISSN: 00012815     EISSN: 13990039     Source Type: Journal    
DOI: 10.1111/j.1399-0039.2011.01669.x     Document Type: Article

References (22)

1. Smith D, Lunney JK, Ho C-S et al. Nomenclature for factors of the SLA class II system, 2005. Tissue Antigens 2005: 66: 623-39.
2. Ho C-S, Lunney JK, Ando A et al. Nomenclature for factors of the SLA system, update 2008. Tissue Antigens 2009: 73: 307-15.
3. Lumsden JS, Kennedy BW, Mallard BA, Wilkie BN. The influence of the swine major histocompatibility genes on antibody and cell-mediated immune responses to immunization with an aromatic-dependent mutant of Salmonella typhimurium. Can J Vet Res 1993: 57: 14-8.
4. Gonzalez-Juarrero M, Lunney JK, Sanchez-Vizcaino JM, Mebus C. Modulation of splenic macrophages, and swine leukocyte antigen (SLA) and viral antigen expression following African swine fever virus (ASFV) inoculation. Arch Virol 1992: 123: 145-56.
5. Lunney JK, Ho C-S, Wysocki M, Smith DM. Molecular genetics of the swine major histocompatibility complex, the SLA complex. Dev Comp Immunol 2009: 33: 362-74.
6. Smith DM, Martens GW, Ho CS, Asbury JM. DNA sequence based typing of swine leukocyte antigens in Yucatan miniature pigs. Xenotransplantation 2005: 12: 481-8.
7. Ando A, Kawata H, Shigenari A et al. Genetic polymorphism of the swine major histocompatibility complex (SLA) class I genes, SLA-1, -2 and -3. Immunogenetics 2003: 55: 583-93.
8. Cho H-O, Ho C-S, Lee Y-J et al. Establishment of a resource population of SLA haplotype-defined Korean native pigs. Mol Cells 2010: 29: 493-9.
9. Diaz MR, Fell JW. High-throughput detection of pathogenic yeasts of the genus trichosporon. J Clin Microbiol 2004: 42: 3696-706.
10. Dunbar SA, Vander Zee CA, Oliver KG, Karem KL, Jacobson JW. Quantitative, multiplexed detection of bacterial pathogens: DNA and protein applications of the Luminex LabMAP system. J Microbiol Methods 2003: 53: 245-52.
11. Ye F, Li MS, Taylor JD et al. Fluorescent microsphere-based readout technology for multiplexed human single nucleotide polymorphism analysis and bacterial identification. Hum Mutat 2001: 17: 305-16.
12. Itoh Y, Mizuki N, Shimada T et al. High throughput DNA typing of HLA-A, -B, -C and -DRB1 loci by a PCR-SSOP Luminex method in the Japanese population. Immunogenetics 2005: 57: 717-29.
13. Itoh Y, Inoko H, Kulski JK et al. Four-digit allele genotyping of the HLA-A and HLA-B genes in Japanese patients with Behcet's disease by a PCR-SSOP Luminex method. Tissue Antigens 2006: 67: 390-4.
14. Mou Y, Wu Z, Gu J et al. HLA-B27 polymorphism in patients with juvenile and adult-onset ankylosing spondylitis in Southern China. Tissue Antigens 2010: 75: 56-60.
15. Zhang F, Liu H, Chen S et al. Evidence for an association of HLA-DRB1*15 and DRB1*09 with leprosy and the impact of DRB1*09 on disease onset in a Chinese Han population. BMC Med Genet 2009: 10: 133.
16. Deak E, Etienne KA, Lockhart SR, Gade L, Chiller T, Balajee SA. Utility of a Luminex-based assay for multiplexed, rapid species identification of Candida isolates from an ongoing candidemia surveillance. Can J Microbiol 2010: 56: 348-51.
17. Washington C, Metzgar D, Hazbón MH et al. A multiplexed Luminex xMAP assay for detection and identification of five Adenovirus serotypes associated with respiratory disease epidemics in adults. J Clin Microbiol 2010: 48: 2217-22.
18. Diaz MR, Boekhout T, Theelen B, Bovers M, Cabanes FJ, Fell JW. Microcoding and flow cytometry as a high-throughput fungal identification system for Malassezia species. J Med Microbiol 2006: 55: 1197-209.
19. Suzuki K, Okamura T, Onodera W et al. Correlated response of immune traits with selection for morbid state of mycoplasma pneumonia of swine in Landrace pigs. 9th World Congress on Genetics Applied to Livestock Production, 2010, 0323-PP2-103.
20. Lee YJ, Cho KH, Kim MJ et al. Sequence-based characterization of the eight SLA loci in Korean native pigs. Int J Immunogenet 2008: 35: 333-4.
21. Ho C-S, Martens GW, Amoss MS, Gomez-Raya L, Beattie CW, Smith DM. Swine leucocyte antigen (SLA) diversity in Sinclair and Hanford swine. Dev Comp Immunol 2010: 34: 250-7.
22. Ho C-S, Lunney JK, Franzo-Romain MH, Martens GW, Rowland RR, Smith DM. Molecular characterization of swine leucocyte antigen class II genes in outbred pig populations. Animal Genet 2010: 41: 428-32.