BNArray: An R package for constructing gene regulatory networks from microarray data by using Bayesian network

Bioinformatics

Volumn 22, Issue 23, 2006, Pages 2952-2954

  Chen, Xiaohui ^a   Chen, Ming ^a,b   Ning, Kaida ^a  

^a ZHEJIANG UNIVERSITY   (China)

^b Zhejiang University   (China)

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

ARTICLE; BAYES THEOREM; DATA ANALYSIS SOFTWARE; DNA MICROARRAY; GENE CONTROL; GENETIC ALGORITHM; INFORMATION PROCESSING; MICROARRAY ANALYSIS; PRIORITY JOURNAL; SAMPLING; STATISTICAL ANALYSIS; STATISTICAL CONCEPTS;

EID: 33751356890     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btl491     Document Type: Article

References (9)

1. Bøttcher,S.G. and Dethlefsen,C. (2003) Deal: A package for learning Bayesian Networks. J. Stat. Software, 8, 1-40.
2. Friedman,N. et al. (1999) Data analysis with Bayesian networks: A bootstrap approach. In Proceedings of 15th Conference on Uncertainty in Artificial Intelligence (UA1), 206-215.
3. Friedman,N. et al. (2000) Using Bayesian networks to analyze expression data. J. Comput. Biol., 7, 601-620.
4. Hartuv,E. and Shamir,R. (2000) Clustering algorithm based on graph connectivity. Information processing letters archive, 76, 175-181.
5. Heckerman,D. (1999) A tutorial on learning with Bayesian networks. In Jordan,M. (ed.), Learning in Graphical Models. MIT Press, Cambridge, MA.
6. Hu,H. et al. (2005) Mining coherent dense subgraphs across massive biological networks for functional discovery. Bioinformatics, 21 (suppl), i213-i221.
7. Kim,H. et al. (2005) Missing value estimation for DNA microarray gene expression data: Local least squares imputation. Bioinformatics, 21, 187-198.
8. Lander,E.S. (1999) Array of hope. Nature, 21, 3-4.
9. Development Core Team (2006) R: A language and environment for statistical computing. R Foundation Statistical Computing, Vienna, Austria.