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Volumn 40, Issue 9, 2010, Pages 781-785

CAM: A web tool for combining array CGH and microarray gene expression data from multiple samples

Author keywords

Array CGH; Cancer; DNA copy number aberrations; Gene expression

Indexed keywords

ARRAY CGH; CANCER; COPY NUMBER; DATA SETS; MICROARRAY GENE EXPRESSION DATA; MULTIPLE SAMPLES; WEB TOOLS; WEB-BASED TOOLS;

EID: 79958765376     PISSN: 00104825     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.compbiomed.2010.07.006     Document Type: Article
Times cited : (2)

References (24)
  • 1
    • 20044375763 scopus 로고    scopus 로고
    • Array comparative genomic hybridization and its applications in cancer
    • Pinkel D., Albertson D.G. Array comparative genomic hybridization and its applications in cancer. Nature Genetics 2005, 37:s11-s17.
    • (2005) Nature Genetics , vol.37
    • Pinkel, D.1    Albertson, D.G.2
  • 2
    • 54549108740 scopus 로고    scopus 로고
    • Cancer Genome Atlas Research Network, Comprehensive genomic characterization defines human glioblastoma genes and core pathways, Nature 455(7216)
    • Cancer Genome Atlas Research Network, Comprehensive genomic characterization defines human glioblastoma genes and core pathways, Nature 455(7216) (2008) 1061-1068.
    • (2008) , pp. 1061-1068
  • 3
    • 36248980204 scopus 로고    scopus 로고
    • Characterizing the cancer genome in lung adenocarcinoma
    • Weir B.A., Woo M.S., Getz G., Perner S., Ding L., et al. Characterizing the cancer genome in lung adenocarcinoma. Nature 2007, 450(7171):893-898.
    • (2007) Nature , vol.450 , Issue.7171 , pp. 893-898
    • Weir, B.A.1    Woo, M.S.2    Getz, G.3    Perner, S.4    Ding, L.5
  • 4
    • 34147224008 scopus 로고    scopus 로고
    • Genome-wide analysis of genetic alterations in acute lymphoblastic leukaemia
    • Mullighan C.G., Goorha S., Radtke I., Miller C.B., et al. Genome-wide analysis of genetic alterations in acute lymphoblastic leukaemia. Nature 2007, 446(7137):758-764.
    • (2007) Nature , vol.446 , Issue.7137 , pp. 758-764
    • Mullighan, C.G.1    Goorha, S.2    Radtke, I.3    Miller, C.B.4
  • 5
    • 33750325630 scopus 로고    scopus 로고
    • High-resolution global genomic survey of 178 gliomas reveals novel regions of copy number alteration and allelic imbalances
    • Kotliarov Y., et al. High-resolution global genomic survey of 178 gliomas reveals novel regions of copy number alteration and allelic imbalances. Cancer Research 2006, 66:9428-9436.
    • (2006) Cancer Research , vol.66 , pp. 9428-9436
    • Kotliarov, Y.1
  • 6
    • 3543105225 scopus 로고    scopus 로고
    • Circular binary segmentation for the analysis of array-based DNA copy number data
    • Olshen A.B., Venkatraman E.S., Lucito R., Wigler M. Circular binary segmentation for the analysis of array-based DNA copy number data. Biostatistics 2004, 5(4):557-572.
    • (2004) Biostatistics , vol.5 , Issue.4 , pp. 557-572
    • Olshen, A.B.1    Venkatraman, E.S.2    Lucito, R.3    Wigler, M.4
  • 7
    • 12344259648 scopus 로고    scopus 로고
    • Analysis of array CGH data: from signal ratio to gain and loss of DNA regions
    • Hupé P., Stransky N., Thiery J.P., Radvanyi F., Barillot E. Analysis of array CGH data: from signal ratio to gain and loss of DNA regions. Bioinformatics 2004, 20(18):3413-3422.
    • (2004) Bioinformatics , vol.20 , Issue.18 , pp. 3413-3422
    • Hupé, P.1    Stransky, N.2    Thiery, J.P.3    Radvanyi, F.4    Barillot, E.5
  • 8
    • 22144458387 scopus 로고    scopus 로고
    • Denoising array-based comparative genomic hybridization data using wavelets
    • Hsu L., Self S.G., Grove D., Randolph T., et al. Denoising array-based comparative genomic hybridization data using wavelets. Biostatistics 2005, 6(2):211-226.
    • (2005) Biostatistics , vol.6 , Issue.2 , pp. 211-226
    • Hsu, L.1    Self, S.G.2    Grove, D.3    Randolph, T.4
  • 9
    • 27544483495 scopus 로고    scopus 로고
    • Comparative analysis of algorithms for identifying amplifications and deletions in array CGH data
    • Weil R.L., Johnson M.D., Kucherlapati R., Park P. Comparative analysis of algorithms for identifying amplifications and deletions in array CGH data. Bioinformatics 2005, 21(19):3763-3770.
    • (2005) Bioinformatics , vol.21 , Issue.19 , pp. 3763-3770
    • Weil, R.L.1    Johnson, M.D.2    Kucherlapati, R.3    Park, P.4
  • 10
    • 33645320532 scopus 로고    scopus 로고
    • Computation of recurrent minimal genomic alterations from array-CGH data
    • Rouveirol C., Stransky N., Hupe Ph., et al. Computation of recurrent minimal genomic alterations from array-CGH data. Bioinformatics 2006, 22(7):849-856.
    • (2006) Bioinformatics , vol.22 , Issue.7 , pp. 849-856
    • Rouveirol, C.1    Stransky, N.2    Hupe, P.3
  • 11
    • 33748276243 scopus 로고    scopus 로고
    • STAC: A method for testing the significance of DNA copy number aberrations across multiple array-CGH experiments
    • Diskin S.J., Eck T., Greshock J., Mosse Y., et al. STAC: A method for testing the significance of DNA copy number aberrations across multiple array-CGH experiments. Genome Research 2005, 16(9):1149-1158.
    • (2005) Genome Research , vol.16 , Issue.9 , pp. 1149-1158
    • Diskin, S.J.1    Eck, T.2    Greshock, J.3    Mosse, Y.4
  • 12
    • 13844250828 scopus 로고    scopus 로고
    • Microarray analysis reveals a major direct role of DNA copy number alteration in the transcriptional program of human breast tumors
    • Pollack J.R., Sørlie T., Perou C.M., Rees C.A., et al. Microarray analysis reveals a major direct role of DNA copy number alteration in the transcriptional program of human breast tumors. Proceedings of National Academy of Science USA 2002, 99(20):12963-12968.
    • (2002) Proceedings of National Academy of Science USA , vol.99 , Issue.20 , pp. 12963-12968
    • Pollack, J.R.1    Sørlie, T.2    Perou, C.M.3    Rees, C.A.4
  • 13
    • 33750587345 scopus 로고    scopus 로고
    • Identification of target genes in laryngeal squamous cell carcinoma by high-resolution copy number and gene expression microarray analyses
    • Jarvinen A.K., et al. Identification of target genes in laryngeal squamous cell carcinoma by high-resolution copy number and gene expression microarray analyses. Oncogene 2006, 25:6997-7008.
    • (2006) Oncogene , vol.25 , pp. 6997-7008
    • Jarvinen, A.K.1
  • 14
    • 33745761066 scopus 로고    scopus 로고
    • The impact of genomic alterations on the transcriptome: a prostate cancer cell line case study
    • Chaudhary J., Schmidt M. The impact of genomic alterations on the transcriptome: a prostate cancer cell line case study. Chromosome Research 2006, 14:567-586.
    • (2006) Chromosome Research , vol.14 , pp. 567-586
    • Chaudhary, J.1    Schmidt, M.2
  • 15
    • 20144389740 scopus 로고    scopus 로고
    • Integrated array-comparative genomic hybridization and expression array profiles identify clinically relevant molecular subtypes of glioblastoma
    • Nigro J.M., et al. Integrated array-comparative genomic hybridization and expression array profiles identify clinically relevant molecular subtypes of glioblastoma. Cancer Research 2005, 65:1678-1686.
    • (2005) Cancer Research , vol.65 , pp. 1678-1686
    • Nigro, J.M.1
  • 16
    • 33847647117 scopus 로고    scopus 로고
    • Identification of IGF2 signaling through phosphoinositide- 3-kinase regulatory subunit 3 as a growth-promoting axis in glioblastoma
    • Soroceanu L., et al. Identification of IGF2 signaling through phosphoinositide- 3-kinase regulatory subunit 3 as a growth-promoting axis in glioblastoma. Proceedings of National Academy of Science USA 2007, 104:3466-3471.
    • (2007) Proceedings of National Academy of Science USA , vol.104 , pp. 3466-3471
    • Soroceanu, L.1
  • 17
    • 34547611743 scopus 로고    scopus 로고
    • ISACGH: a web-based environment for the analysis of array CGH and gene expression which includes functional profiling
    • Web Server issue
    • Conde L., Montaner D., Burguet-Castell J., et al. ISACGH: a web-based environment for the analysis of array CGH and gene expression which includes functional profiling. Nucleic Acids Research 2007, 35(Web Server issue):W81-W85.
    • (2007) Nucleic Acids Research , vol.35
    • Conde, L.1    Montaner, D.2    Burguet-Castell, J.3
  • 18
    • 40349108567 scopus 로고    scopus 로고
    • ADaCGH: a parallelized web-based application and R package for the analysis of aCGH data
    • Díaz-Uriarte R., Rueda O.M. ADaCGH: a parallelized web-based application and R package for the analysis of aCGH data. PLoS ONE 2007, 2(1):e737.
    • (2007) PLoS ONE , vol.2 , Issue.1
    • Díaz-Uriarte, R.1    Rueda, O.M.2
  • 19
    • 41349085816 scopus 로고    scopus 로고
    • CGHweb: a tool for comparing DNA copy number segmentations from multiple algorithms
    • Lai W., Choudhary C., Park P.J. CGHweb: a tool for comparing DNA copy number segmentations from multiple algorithms. Bioinformatics 2008, 24(7):1014-1015.
    • (2008) Bioinformatics , vol.24 , Issue.7 , pp. 1014-1015
    • Lai, W.1    Choudhary, C.2    Park, P.J.3
  • 22
    • 77249119762 scopus 로고    scopus 로고
    • The landscape of somatic copy-number alteration across human cancers
    • Beroukhim R., Mermel C.H., Porter D., Wei G., Raychaudhuri S., et al. The landscape of somatic copy-number alteration across human cancers. Nature 2010, 463(7283):899-905.
    • (2010) Nature , vol.463 , Issue.7283 , pp. 899-905
    • Beroukhim, R.1    Mermel, C.H.2    Porter, D.3    Wei, G.4    Raychaudhuri, S.5
  • 23
    • 77249123407 scopus 로고    scopus 로고
    • Signatures of mutation and selection in the cancer genome
    • Bignell G.R., Greenman C.D., Davies H., Butler A.P., Edkins S., et al. Signatures of mutation and selection in the cancer genome. Nature 2010, 463(7283):893-898.
    • (2010) Nature , vol.463 , Issue.7283 , pp. 893-898
    • Bignell, G.R.1    Greenman, C.D.2    Davies, H.3    Butler, A.P.4    Edkins, S.5
  • 24
    • 10244255212 scopus 로고    scopus 로고
    • Taverna: a tool for the composition and enactment of bioinformatics workflows
    • Oinn T., Addis M., Ferris J., Marvin D., Senger M., et al. Taverna: a tool for the composition and enactment of bioinformatics workflows. Bioinformatics 2004, 20(17):3045-3054.
    • (2004) Bioinformatics , vol.20 , Issue.17 , pp. 3045-3054
    • Oinn, T.1    Addis, M.2    Ferris, J.3    Marvin, D.4    Senger, M.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.