-
1
-
-
58149490714
-
Determination of tag density required for digital transcriptome analysis: Application to an androgen-sensitive prostate cancer model
-
Li, H., Lovci, M. T., Kwon, Y. S., Rosenfeld, M. G., Fu, X. D., and Yeo, G. W. (2008) Determination of tag density required for digital transcriptome analysis: application to an androgen-sensitive prostate cancer model. Proc Natl Acad Sci USA. 105, 20179–20184.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 20179-20184
-
-
Li, H.1
Lovci, M.T.2
Kwon, Y.S.3
Rosenfeld, M.G.4
Fu, X.D.5
Yeo, G.W.6
-
2
-
-
36148972085
-
Antisense artifacts in transcriptome microarray experiments are resolved by actinomycin D
-
Perocchi, F., Xu, Z., Clauder-Munster, S., and Steinmetz, L. M. (2007) Antisense artifacts in transcriptome microarray experiments are resolved by actinomycin D. Nucleic Acids Res. 35, e128.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. e128
-
-
Perocchi, F.1
Xu, Z.2
Clauder-Munster, S.3
Steinmetz, L.M.4
-
3
-
-
24644519490
-
The transcriptional landscape of the mammalian genome
-
Carninci, P., Kasukawa, T., Katayama, S., et al. (2005) The transcriptional landscape of the mammalian genome. Science 309, 1559–1563.
-
(2005)
Science
, vol.309
, pp. 1559-1563
-
-
Carninci, P.1
Kasukawa, T.2
Katayama, S.3
-
4
-
-
21044431735
-
Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution
-
Cheng, J., Kapranov, P., Drenkow, J., Dike, S., Brubaker, S., Patel, S., Long, J., Stern, D., Tammana, H., Helt, G., Sementchenko, V., Piccolboni, A., Bekiranov, S., Bailey, D. K., Ganesh, M., Ghosh, S., Bell, I., Gerhard, D. S., and Gingeras, T. R. (2005) Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution. Science 308, 1149–1154.
-
(2005)
Science
, vol.308
, pp. 1149-1154
-
-
Cheng, J.1
Kapranov, P.2
Drenkow, J.3
Dike, S.4
Brubaker, S.5
Patel, S.6
Long, J.7
Stern, D.8
Tammana, H.9
Helt, G.10
Sementchenko, V.11
Piccolboni, A.12
Bekiranov, S.13
Bailey, D.K.14
Ganesh, M.15
Ghosh, S.16
Bell, I.17
Gerhard, D.S.18
Gingeras, T.R.19
-
5
-
-
0037250168
-
The UCSC genome browser database
-
Karolchik, D., Baertsch, R., Diekhans, M., Furey, T. S., Hinrichs, A., Lu, Y. T., Roskin, K. M., Schwartz, M., Sugnet, C. W., Thomas, D. J., Weber, R. J., Haussler, D., and Kent, W. J. (2003) The UCSC genome browser database. Nucleic Acids Res. 31, 51–54.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 51-54
-
-
Karolchik, D.1
Baertsch, R.2
Diekhans, M.3
Furey, T.S.4
Hinrichs, A.5
Lu, Y.T.6
Roskin, K.M.7
Schwartz, M.8
Sugnet, C.W.9
Thomas, D.J.10
Weber, R.J.11
Haussler, D.12
Kent, W.J.13
-
6
-
-
34249696543
-
Discovery and analysis of evolutionarily conserved intronic splicing regulatory elements
-
Yeo, G. W., Van Nostrand, E. L., and Liang, T. Y. (2007) Discovery and analysis of evolutionarily conserved intronic splicing regulatory elements. PLoS Genet. 3, e85.
-
(2007)
Plos Genet
, vol.3
-
-
Yeo, G.W.1
van Nostrand, E.L.2
Liang, T.Y.3
-
7
-
-
38749149152
-
Whole-genome sequencing and variant discovery in C. elegans
-
Hillier, L. W., Marth, G. T., Quinlan, A. R., et al. (2008) Whole-genome sequencing and variant discovery in C. elegans. Nat. Meth. 5, 183–188.
-
(2008)
Nat. Meth.
, vol.5
, pp. 183-188
-
-
Hillier, L.W.1
Marth, G.T.2
Quinlan, A.R.3
-
8
-
-
49549102475
-
Optimal spliced alignments of short sequence reads
-
De Bona, F., Ossowski, S., Schneeberger, K., and Ratsch, G. (2008) Optimal spliced alignments of short sequence reads. Bioinformatics 24, i174–i180.
-
(2008)
Bioinformatics
, vol.24
, pp. i174-i180
-
-
de Bona, F.1
Ossowski, S.2
Schneeberger, K.3
Ratsch, G.4
-
9
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead, B., Trapnell, C., Pop, M., and Salzberg, S. L. (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 10, R25.
-
(2009)
Genome Biol
, vol.10
, pp. R25
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
10
-
-
69749106334
-
RazerS–fast read mapping with sensitivity control
-
Weese, D., Emde, A. K., Rausch, T., Doring, A., and Reinert, K. (2009) RazerS–fast read mapping with sensitivity control. Genome Res. 19, 1646–1654.
-
(2009)
Genome Res
, vol.19
, pp. 1646-1654
-
-
Weese, D.1
Emde, A.K.2
Rausch, T.3
Doring, A.4
Reinert, K.5
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