메뉴 건너뛰기




Volumn 410, Issue 1, 2011, Pages 50-59

Role of φ29 connector channel loops in late-stage DNA packaging

Author keywords

bacteriophage phi29; DNA packaging; head tail connector; portal protein; virus assembly

Indexed keywords

ADENOSINE TRIPHOSPHATASE; ADENOSINE TRIPHOSPHATE; ALANINE; GENOMIC DNA; PEPTIDE; PLASMID DNA; VIRUS DNA;

EID: 79958703404     PISSN: 00222836     EISSN: 10898638     Source Type: Journal    
DOI: 10.1016/j.jmb.2011.04.070     Document Type: Article
Times cited : (51)

References (36)
  • 1
    • 33744805436 scopus 로고    scopus 로고
    • DNA packaging in double-stranded DNA bacteriophages
    • Calendar, R., ed., Oxford Press, Oxford, United Kingdom; chapt. 6
    • Jardine, P. J. & Anderson, D. (2006). DNA packaging in double-stranded DNA bacteriophages. In The Bacteriophages (Calendar, R., ed.), pp. 49-65, Oxford Press, Oxford, United Kingdom; chapt. 6.
    • (2006) The Bacteriophages , pp. 49-65
    • Jardine, P.J.1    Anderson, D.2
  • 2
    • 57649226492 scopus 로고    scopus 로고
    • The bacteriophage DNA packaging motor
    • Rao, V. B. & Feiss, M. (2008). The bacteriophage DNA packaging motor. Annu. Rev. Genet. 42, 647-681.
    • (2008) Annu. Rev. Genet. , vol.42 , pp. 647-681
    • Rao, V.B.1    Feiss, M.2
  • 4
    • 48149087104 scopus 로고    scopus 로고
    • Defining molecular and domain boundaries in the bacteriophage φ29 DNA packaging motor
    • Morais, M. C., Koti, J. S., Bowman, V. D., Reyes-Aldrete, E., Anderson, D. L. & Rossmann, M. G. (2008). Defining molecular and domain boundaries in the bacteriophage φ29 DNA packaging motor. Structure, 16, 1267-1274.
    • (2008) Structure , vol.16 , pp. 1267-1274
    • Morais, M.C.1    Koti, J.S.2    Bowman, V.D.3    Reyes-Aldrete, E.4    Anderson, D.L.5    Rossmann, M.G.6
  • 6
    • 0032110708 scopus 로고    scopus 로고
    • Inter-RNA interaction of phage φ29 pRNA to form a hexameric complex for viral DNA transportation
    • Guo, P., Zhang, C., Chen, C., Garver, K. & Trottier, M. (1998). Inter-RNA interaction of phage φ29 pRNA to form a hexameric complex for viral DNA transportation. Mol. Cell, 2, 149-155.
    • (1998) Mol. Cell , vol.2 , pp. 149-155
    • Guo, P.1    Zhang, C.2    Chen, C.3    Garver, K.4    Trottier, M.5
  • 7
    • 0023225629 scopus 로고
    • A small viral RNA is required for in vitro packaging of bacteriophage φ29 DNA
    • Guo, P., Erickson, S. & Anderson, D. L. (1987). A small viral RNA is required for in vitro packaging of bacteriophage φ29 DNA. Science, 236, 690-694. (Pubitemid 17076855)
    • (1987) Science , vol.236 , Issue.4802 , pp. 690-694
    • Guo, P.1    Erickson, S.2    Anderson, D.3
  • 8
    • 0036301072 scopus 로고    scopus 로고
    • Detailed architecture of a DNA translocating machine: The high-resolution structure of the bacteriophage φ29 connector particle
    • Guasch, A., Pous, J., Ibarra, B., Gomis-Ruth, F. X., Valpuesta, J. M., Sousa, N. et al. (2002). Detailed architecture of a DNA translocating machine: the high-resolution structure of the bacteriophage φ29 connector particle. J. Mol. Biol. 315, 663-676.
    • (2002) J. Mol. Biol. , vol.315 , pp. 663-676
    • Guasch, A.1    Pous, J.2    Ibarra, B.3    Gomis-Ruth, F.X.4    Valpuesta, J.M.5    Sousa, N.6
  • 10
    • 17044395121 scopus 로고    scopus 로고
    • Conservation of the capsid structure in tailed dsDNA bacteriophages: The pseudoatomic structure of φ29
    • Morais, M. C., Choi, K. H., Koti, J. S., Chipman, P. R., Anderson, D. L. & Rossmann, M. G. (2005). Conservation of the capsid structure in tailed dsDNA bacteriophages: the pseudoatomic structure of φ29. Mol. Cell, 18, 149-159.
    • (2005) Mol. Cell , vol.18 , pp. 149-159
    • Morais, M.C.1    Choi, K.H.2    Koti, J.S.3    Chipman, P.R.4    Anderson, D.L.5    Rossmann, M.G.6
  • 12
    • 0031473847 scopus 로고    scopus 로고
    • SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modeling
    • DOI 10.1002/elps.1150181505
    • Guex, N. & Peitsch, M. C. (1997). SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling. Electrophoresis, 18, 2714-2723. (Pubitemid 28059943)
    • (1997) Electrophoresis , vol.18 , Issue.15 , pp. 2714-2723
    • Guex, N.1    Peitsch, M.C.2
  • 15
    • 0025923286 scopus 로고
    • Regulation of the phage phi 29 prohead shape and size by the portal vertex
    • Guo, P. X., Erickson, S., Xu, W., Olson, N., Baker, T. S. & Anderson, D. (1991). Regulation of the phage phi 29 prohead shape and size by the portal vertex. Virology, 183, 366-373.
    • (1991) Virology , vol.183 , pp. 366-373
    • Guo, P.X.1    Erickson, S.2    Xu, W.3    Olson, N.4    Baker, T.S.5    Anderson, D.6
  • 16
    • 0031567019 scopus 로고    scopus 로고
    • The bacteriophage φ29 packaging proteins supercoil the DNA ends
    • Grimes, S. & Anderson, D. (1997). The bacteriophage φ29 packaging proteins supercoil the DNA ends. J. Mol. Biol. 266, 901-914.
    • (1997) J. Mol. Biol. , vol.266 , pp. 901-914
    • Grimes, S.1    Anderson, D.2
  • 17
    • 24144478521 scopus 로고    scopus 로고
    • Mechanism of force generation of a viral DNA packaging motor
    • DOI 10.1016/j.cell.2005.06.024, PII S0092867405006434
    • Chemla, Y. R., Aathavan, K., Michaelis, J., Grimes, S., Jardine, P. J., Anderson, D. L. & Bustamante, C. (2005). Mechanism of force generation of a viral DNA packaging motor. Cell, 122, 683-692. (Pubitemid 41242634)
    • (2005) Cell , vol.122 , Issue.5 , pp. 683-692
    • Chemla, Y.R.1    Aathavan, K.2    Michaelis, J.3    Grimes, S.4    Jardine, P.J.5    Anderson, D.L.6    Bustamante, C.7
  • 18
    • 0022444512 scopus 로고
    • A defined system for in vitro packaging of DNA-gp3 of the Bacillus subtilis bacteriophage φ29
    • Guo, P., Grimes, S. & Anderson, D. L. (1986). A defined system for in vitro packaging of DNA-gp3 of the Bacillus subtilis bacteriophage φ29. Proc. Natl Acad. Sci. USA, 83, 3505-3509.
    • (1986) Proc. Natl Acad. Sci. USA , vol.83 , pp. 3505-3509
    • Guo, P.1    Grimes, S.2    Anderson, D.L.3
  • 19
    • 0020694653 scopus 로고
    • Morphogenesis of bacteriophage φ29 of Bacillus subtilis: Oriented and quantized in vitro packaging of DNA protein gp3
    • Bjornsti, M. A., Reilly, B. E. & Anderson, D. L. (1983). Morphogenesis of bacteriophage φ29 of Bacillus subtilis: oriented and quantized in vitro packaging of DNA protein gp3. J. Virol. 45, 383-396. (Pubitemid 13166313)
    • (1983) Journal of Virology , vol.45 , Issue.1 , pp. 383-396
    • Bjornsti, M.A.1    Reilly, B.E.2    Anderson, D.L.3
  • 20
    • 33947281384 scopus 로고    scopus 로고
    • The structure of the ATPase that powers DNA packaging into bacteriophage T4 procapsids
    • Sun, S., Kondabagil, K., Gentz, P. M., Rossmann, M. G. & Rao, V. B. (2007). The structure of the ATPase that powers DNA packaging into bacteriophage T4 procapsids. Mol. Cell, 25, 943-949.
    • (2007) Mol. Cell , vol.25 , pp. 943-949
    • Sun, S.1    Kondabagil, K.2    Gentz, P.M.3    Rossmann, M.G.4    Rao, V.B.5
  • 21
    • 57649228017 scopus 로고    scopus 로고
    • The structure of the phage T4 DNA packaging motor suggests a mechanism dependent on electrostatic forces
    • Sun, S., Kondabagil, K., Draper, B., Alam, T. I., Bowman, V. D., Zhang, Z. et al. (2008). The structure of the phage T4 DNA packaging motor suggests a mechanism dependent on electrostatic forces. Cell, 135, 1251-1262.
    • (2008) Cell , vol.135 , pp. 1251-1262
    • Sun, S.1    Kondabagil, K.2    Draper, B.3    Alam, T.I.4    Bowman, V.D.5    Zhang, Z.6
  • 23
    • 1942521214 scopus 로고    scopus 로고
    • The portal protein plays essential roles at different steps of the SPP1 DNA packaging process
    • DOI 10.1016/j.virol.2004.02.012, PII S0042682204001217
    • Isidro, A., Henriques, A. O. & Tavares, P. (2004). The portal protein plays essential roles at different steps of the SPP1 DNA packaging process. Virology, 322, 253-263. (Pubitemid 38521140)
    • (2004) Virology , vol.322 , Issue.2 , pp. 253-263
    • Isidro, A.1    Henriques, A.O.2    Tavares, P.3
  • 24
    • 1442276352 scopus 로고    scopus 로고
    • The high-resolution functional map of bacteriophage SPP1 portal protein
    • Isidro, A., Santos, M. A., Henriques, A. O. & Tavares, P. (2004). The high-resolution functional map of bacteriophage SPP1 portal protein. Mol. Microbiol. 51, 949-962.
    • (2004) Mol. Microbiol. , vol.51 , pp. 949-962
    • Isidro, A.1    Santos, M.A.2    Henriques, A.O.3    Tavares, P.4
  • 25
    • 33746819782 scopus 로고    scopus 로고
    • Modulation of the viral ATPase activity by the portal protein correlates with DNA packaging efficiency
    • Oliveira, L., Henriques, A. O. & Tavares, P. (2006). Modulation of the viral ATPase activity by the portal protein correlates with DNA packaging efficiency. J. Biol. Chem. 281, 21914-21923.
    • (2006) J. Biol. Chem. , vol.281 , pp. 21914-21923
    • Oliveira, L.1    Henriques, A.O.2    Tavares, P.3
  • 27
    • 0037451286 scopus 로고    scopus 로고
    • Structure of a viral DNA gatekeeper at 10 Å resolution by cryo-electron microscopy
    • DOI 10.1093/emboj/cdg123
    • Orlova, E. V., Gowen, B., Dröge, A., Stiege, A., Weise, F., Lurz, R. et al. (2003). Structure of a viral DNA gatekeeper at 10 Å resolution by cryo-electron microscopy. EMBO J. 22, 1255-1262. (Pubitemid 36362689)
    • (2003) EMBO Journal , vol.22 , Issue.6 , pp. 1255-1262
    • Orlova, E.V.1    Gowen, B.2    Droge, A.3    Stiege, A.4    Weise, F.5    Lurz, R.6    Van Heel, M.7    Tavares, P.8
  • 28
    • 34547130847 scopus 로고    scopus 로고
    • Structural rearrangements between portal protein subunits are essential for viral DNA translocation
    • Cuervo, A., Vaney, M. C., Antson, A. A., Tavares, P. & Oliveira, L. (2007). Structural rearrangements between portal protein subunits are essential for viral DNA translocation. J. Biol. Chem. 282, 18907-18913.
    • (2007) J. Biol. Chem. , vol.282 , pp. 18907-18913
    • Cuervo, A.1    Vaney, M.C.2    Antson, A.A.3    Tavares, P.4    Oliveira, L.5
  • 29
    • 0026603718 scopus 로고
    • Identification of a gene in Bacillus subtilis bacteriophage SPP1 determining the amount of packaged DNA
    • Tavares, P., Santos, M. A., Lurz, R., Morelli, G., de Lencastre, H. & Trautner, T. A. (1992). Identification of a gene in Bacillus subtilis bacteriophage SPP1 determining the amount of packaged DNA. J. Mol. Biol. 225, 81-92.
    • (1992) J. Mol. Biol. , vol.225 , pp. 81-92
    • Tavares, P.1    Santos, M.A.2    Lurz, R.3    Morelli, G.4    De Lencastre, H.5    Trautner, T.A.6
  • 32
    • 3242878412 scopus 로고    scopus 로고
    • 3DCoffee@igs: A web server for combining sequences and structures into a multiple sequence alignment
    • DOI 10.1093/nar/gkh382
    • Poirot, O., Suhre, K., Abergel, C., O'Toole, E. & Notredame, C. (2004). 3DCoffee@igs: a web server for combining sequences and structures into a multiple sequence alignment. Nucleic Acids Res. 32, W37-W40. (Pubitemid 38997295)
    • (2004) Nucleic Acids Research , vol.32 , Issue.WEB SERVER ISS.
    • Poirot, O.1    Suhre, K.2    Abergel, C.3    O'Toole, E.4    Notredame, C.5
  • 33
    • 0033746760 scopus 로고    scopus 로고
    • Site-directed mutagenesis of large (13-kb) plasmids in a single-PCR procedure
    • Wang, J. & Wilkinson, M. F. (2000). Site-directed mutagenesis of large (13-kb) plasmids in a single-PCR procedure. BioTechniques, 29, 976-978.
    • (2000) BioTechniques , vol.29 , pp. 976-978
    • Wang, J.1    Wilkinson, M.F.2
  • 34
    • 0034793901 scopus 로고    scopus 로고
    • Deletion mutagenesis of large (12-kb) plasmids by a one-step pcr protocol
    • Wang, J. & Wilkinson, M. F. (2001). Deletion mutagenesis of large (12-kb) plasmids by a one-step PCR protocol. BioTechniques, 31, 722-724. (Pubitemid 32963579)
    • (2001) BioTechniques , vol.31 , Issue.4 , pp. 722-724
    • Wang, J.1    Wilkinson, M.F.2
  • 35
    • 34247356107 scopus 로고    scopus 로고
    • Alanine scanning and Fe-BABE probing of the bacteriophage φ29 prohead RNA-connector interaction
    • Atz, R., Ma, S., Gao, J., Anderson, D. L. & Grimes, S. (2007). Alanine scanning and Fe-BABE probing of the bacteriophage φ29 prohead RNA-connector interaction. J. Mol. Biol. 369, 239-248.
    • (2007) J. Mol. Biol. , vol.369 , pp. 239-248
    • Atz, R.1    Ma, S.2    Gao, J.3    Anderson, D.L.4    Grimes, S.5
  • 36
    • 52949145603 scopus 로고    scopus 로고
    • Role of the CCA bulge of prohead RNA of bacteriophage φ29 in DNA packaging
    • Zhao, W., Morais, M. C., Anderson, D. L., Jardine, P. J. & Grimes, S. (2008). Role of the CCA bulge of prohead RNA of bacteriophage φ29 in DNA packaging. J. Mol. Biol. 383, 520-528.
    • (2008) J. Mol. Biol. , vol.383 , pp. 520-528
    • Zhao, W.1    Morais, M.C.2    Anderson, D.L.3    Jardine, P.J.4    Grimes, S.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.