Characterization of a gene cluster and its putative promoter region for violacein biosynthesis in Pseudoalteromonas sp. 520P1

Applied Microbiology and Biotechnology

Volumn 90, Issue 6, 2011, Pages 1963-1971

  Zhang, Xi ^a   Enomoto, Keiichi ^a  

^a KOCHI UNIVERSITY OF TECHNOLOGY   (Japan)

Author keywords

Fosmid library; Gene cluster; Heterologous expression; Promoter prediction; Pseudoalteromonas; Violacein

Indexed keywords

FOSMID LIBRARY; GENE CLUSTER; HETEROLOGOUS EXPRESSION; PROMOTER PREDICTION; PSEUDOALTEROMONAS; VIOLACEIN;

BACTERIA; BIOCHEMISTRY; BIOSYNTHESIS; CATALYSTS; ENZYMES; ESCHERICHIA COLI; MACHINERY;

GENE EXPRESSION;

PIGMENT; UNCLASSIFIED DRUG; VIOLACEIN;

BACTERIUM; CLONE; ENZYME ACTIVITY; GENE EXPRESSION; GENETIC ANALYSIS; LIQUID CHROMATOGRAPHY; MOLECULAR ANALYSIS; PIGMENT;

ARTICLE; BACTERIAL GENE; BIOSYNTHESIS; CHROMOBACTERIUM VIOLACEUM; CLONE; ENZYME SYNTHESIS; GENE CLUSTER; GENE SEQUENCE; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; IN VIVO STUDY; MOLECULAR MECHANICS; NUCLEOTIDE SEQUENCE; PROMOTER REGION; PSEUDOALTEROMONAS; QUORUM SENSING;

BIOSYNTHETIC PATHWAYS; CLONING, MOLECULAR; DNA, BACTERIAL; GENE EXPRESSION; INDOLES; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; PIGMENTS, BIOLOGICAL; PROMOTER REGIONS, GENETIC; PSEUDOALTEROMONAS; QUORUM SENSING; SEQUENCE ANALYSIS, DNA; SIGNAL TRANSDUCTION;

CHROMOBACTERIUM VIOLACEUM; ESCHERICHIA COLI; NEGIBACTERIA; PSEUDOALTEROMONAS; PSEUDOALTEROMONAS SP.;

EID: 79958241506     PISSN: 01757598     EISSN: 14320614     Source Type: Journal    
DOI: 10.1007/s00253-011-3203-9     Document Type: Article

References (34)

1. Ahmetagic A, Pemberton JM (2010) Stable high level expression of the violacein indolocarbazole anti-tumour gene cluster and the Streptomyces lividans amyA gene in E. coli K12. Plasmid 63:79-85
2. Andrighetti-Fröhner CR, Antonio RV, Creczynski-Pasa TB, Barardi CR, Simões CM (2003) Cytotoxicity and potential antiviral evaluation of violacein produced by Chromobacterium violaceum. Mem Inst Oswaldo Cruz 98:843-848
3. August PR, Grossman TH, Minor C, Draper MP, MacNeil IA, Pemberton JM, Call KM, Holt D, Osburne MS (2000) Sequence analysis and functional characterization of the violacein biosynthetic pathway from Chromobacterium violaceum. J Mol Microbiol Biotechnol 2:513-519
4. Balibar CJ, Walsh CT (2006) In vitro biosynthesis of violacein from L-tryptophan by the enzymes VioA-E from Chromobacterium violaceum. Biochemistry 45:15444-15457
5. Becker MH, Brucker RM, Schwantes CR, Harris RN, Minbiole KPC (2009) The bacterially produced metabolite violacein is associated with survival of amphibians infected with a lethal fungus. Appl Environ Microbiol 75:6635-6638
6. Brady SF, Chao CJ, Handelsman J, Clardy J (2001) Cloning and heterologous expression of a natural product biosynthetic gene cluster from eDNA. Org Lett 3:1981-1984
7. Devine JH, Countryman C, Baldwin TO (1988) Nucleotide sequence of the luxR and luxI genes and the structure of the primary regulatory region of the lux regulon of Vibrio fischeri ATCC 7744. Biochemistry 27:837-842
8. Durán N, Menck CFM (2001) Chromobacterium violaceum: a review of pharmacological and industiral perspectives. Crit Rev Microbiol 27:201-222 (Pubitemid 32929896)
9. Gauthier MJ (1982) Validation of the name Alteromonas luteoviolacea. Int J Syst Bacteriol 32:82-86
10. Hakvåg S, Fjaervik E, Klinkenberg G, Borgos SE, Josefsen KD, Ellingsen TE, Zotchev SB (2009) Violacein-producing Collimonas sp. from the sea surface microlayer of coastal waters in Trøndelag, Norway. Mar Drugs 7:576-588
11. Hirano S, Asamizu S, Onaka H, Shiro Y, Nagano S (2008) Crystal structure of VioE, a key player in the construction of the molecular skeleton of violacein. J Biol Chem 283:6459-6466
12. Hrvatin S, Piel J (2007) Rapid isolation of rare clones from highly complex DNA libraries by PCR analysis of liquid gel pools. J Microbiol Methods 68:434-436 (Pubitemid 46149946)
13. Jiang PX, Wang HS, Zhang C, Lou K, Xing XH (2010) Reconstruction of the violacein biosynthetic pathway from Duganella sp. B2 in different heterologous hosts. Appl Microbiol Biotechnol 86:1077-1088
14. Leon LL, Miranda CC, De Souza AO, Durán N (2001) Antileishmanial activity of the violacein extracted from Chromobacterium violaceum. J Antimicrob Chemother 48:449-450 (Pubitemid 32898824)
15. Lopes SCP, Blanco YC, Justo GZ, Nogueira PA, Rodrigues FLS, Goelnitz U, Wunderlich G, Facchini G, Brocchi M, Duran N, Costa FTM (2009) Violacein extracted from Chromobacterium violaceum inhibits Plasmodium growth in vitro and in vivo. Antimicrob Agents Chemother 53:2149-2152
16. McCarthy SA, Sakata T, Kakimoto D, Johnson RM (1985) Production and isolation of purple pigment by Alteromonas luteoviolacea. Bull Jpn Soc Sci Fish 51:479-484
17. McClean KH, Winson MK, Fish L, Taylor A, Chhabra SR, Camara M, DaykinM, Lamb JH, Swift S, BycroftBW, Stewart GSAB,Williams P (1997) Quorum sensing and Chromobacterium violaceum: exploitation of violacein production and inhibition for the detection of N-acylhomoserine lactones. Microbiology 143:3703-3711 (Pubitemid 28004603)
18. Melo PS, Maria SS, Vidal BC, Haun M, Durán N (2000) Violacein cytotoxicity and induction of apoptosis in V79 cells. In Vitro Cell Dev Biol Anim 36:539-543
19. Momen AZ, Hoshino T (2000) Biosynthesis of violacein: intact incorporation of the tryptophan molecule on the oxindole side, with intramolecular rearrangement of the indole ring on the 5- hydroxyindole side. Biosci Biotechnol Biochem 64:539-549
20. Morohoshi T, Fukamachi K, KatoM, Kato N, Ikeda T (2010) Regulation of the violacein biosynthetic gene cluster by acylhomoserine lactone-mediated quorum sensing in Chromobacterium violaceum ATCC 12472. Biosci Biotechnol Biochem 74:2116-2119
21. Pantanella F, Berlutti F, Passariello C, Sarli S, Morea C, Schippa S (2007) Violacein and biofilm production in Janthinobacterium lividum. J Appl Microbiol 102:992-999 (Pubitemid 46457480)
22. Pemberton JM, Vincent KM, Penfold RJ (1991) Cloning and heterologous expression of the violacein biosynthesis gene cluster from Chromobacterium violaceum. Curr Microbiol 22:355-358
23. Ryan KS, Balibar CJ, Turo KE, Walsh CT, Drennan CL (2008) The violacein biosynthetic enzyme VioE shares a fold with lipoprotein transporter proteins. J Biol Chem 283:6467-6475
24. Sánchez C, Braña AF, Méndez C, Salas JA (2006) Reevaluation of the violacein biosynthetic pathway and its relationship to indolocarbazole biosynthesis. Chembiochem 7:1231-1240 (Pubitemid 44230847)
25. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
26. Schloss PD, Allen HK, Klimowicz AK, Mlot C, Gross JA, Savengsuksa S, McEllin J, Clardy J, Ruess RW, Handelsman J (2010) Psychrotrophic strain of Janthinobacterium lividum from a cold Alaskan soil produces prodigiosin. DNA Cell Biol 29:1-9
27. Shirata A, Tsukamoto T, Yasui H, Hata H, Hayasaka S, Kojima A, Kato H (2000) Isolation of bacteria producing bluish-purple pigment and use for dyeing. J Agrc Res Q 34:131-140
28. Stevens AM, Dolan KM, Greenberg EP (1994) Synergistic binding of the Vibrio fischeri LuxR transcriptional activator domain and RNA polymerase to the lux promoter region. Proc Natl Acad Sci USA 91:12619-12623
29. Studier FM (2005) Protein production by auto-induction in high-density shaking cultures. Protein Expr Purif 41:207-234
30. Taga N (1968) Some ecological aspects of marine bacteria in the Kuroshio current. Bull Misaki Mar Biol Inst Kyoto Univ 12:65-76
31. Thomas T, Evans FF, Schleheck D, Mai-Prochnow A, Burke C, Penesyan A, Dalisay DS, Stelzer-Braid S, Saunders N, Johnson J, Ferriera S, Kjelleberg S, Egan S (2008) Analysis of the Pseudoalteromonas tunicata genome reveals properties of a surface-associated life style in the marine environment. PLoS ONE 3:e3252
32. Wang Y, Ikawa A, Okaue S, Taniguchi S, Osaka I, Yoshimoto A, Kishida Y, Arakawa R, Enomoto K (2008) Quorum sensing signaling molecules involved in the production of violacein by Pseudoalteromonas. Biosci Biotechnol Biochem 72:1958-1961
33. Wang HS, Jiang PX, Lu Y, Ruan ZY, Jiang RB, Xing XH, Lou K, Wei D (2009) Optimization of culture conditions for violacein production by a new strain of Duganella sp. B2. Biochem Eng J 44:119-124
34. Yada S, Wang Y, Zou Y, Nagasaki K, Hosokawa K, Osaka I, Arakawa R, Enomoto K (2008) Isolation and characterization of two groups of novel marine bacteria producing violacein. Mar Biotechnol 10:128-132 (Pubitemid 351347961)