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Volumn 26, Issue 2, 2011, Pages 113-119

Seasonal change of bacterial community structure in a biofilm formed on the surface of the aquatic macrophyte phragmites australis

Author keywords

Bacterial community; Biofilm; Lake biwa; Seasonal change

Indexed keywords

BACTERIAL RNA; FRESH WATER;

EID: 79958196413     PISSN: 13426311     EISSN: 13426311     Source Type: Journal    
DOI: 10.1264/jsme2.ME10183     Document Type: Article
Times cited : (15)

References (44)
  • 2
    • 0037311880 scopus 로고    scopus 로고
    • Bacterial activity and community composition in stream water and biofilm from an urban river determined by Fluorescent in situ hybridization and DGGE analysis
    • Araya, R., K. Tani, T. Takagi, N. Yamaguchi, and M. Nasu. 2003. Bacterial activity and community composition in stream water and biofilm from an urban river determined by Fluorescent in situ hybridization and DGGE analysis. FEMS Microbiol. Ecol. 43:111-119.
    • (2003) FEMS Microbiol. Ecol , vol.43 , pp. 111-119
    • Araya, R.1    Tani, K.2    Takagi, T.3    Yamaguchi, N.4    Nasu, M.5
  • 3
    • 0014309213 scopus 로고
    • Isolation of Acinetobacter from soil and water
    • Baumann, P. 1968. Isolation of Acinetobacter from soil and water. J. Bacteriol. 96:39-42.
    • (1968) J. Bacteriol , vol.96 , pp. 39-42
    • Baumann, P.1
  • 4
    • 33645085864 scopus 로고    scopus 로고
    • A major protein component of the Bacillus subtilis biofilm matrix
    • Branda, S.S., F. Chu, D.B. Kearns, R. Losick, and R. Kolter. 2006. A major protein component of the Bacillus subtilis biofilm matrix. Mol. Microbiol. 59:1229-1238.
    • (2006) Mol. Microbiol , vol.59 , pp. 1229-1238
    • Branda, S.S.1    Chu, F.2    Kearns, D.B.3    Losick, R.4    Kolter, R.5
  • 5
    • 0033933790 scopus 로고    scopus 로고
    • Biofilm community structure in polluted rivers: Abundance of dominant phylogenetic groups over a complete annual cycle
    • Brümmer, I.H.M., W. Fehr, and I. Wagner-Döbler. 2000. Biofilm community structure in polluted rivers: Abundance of dominant phylogenetic groups over a complete annual cycle. Appl. Environ. Microbiol. 66:3078-3082.
    • (2000) Appl. Environ. Microbiol , vol.66 , pp. 3078-3082
    • Brümmer, I.H.M.1    Fehr, W.2    Wagner-Döbler, I.3
  • 6
    • 0037290241 scopus 로고    scopus 로고
    • Application of broad-range 16S rRNA PCR amplification and DGGE fingerprinting for detection of tick-infecting bacteria
    • Claudia, S.G., W. Lubitz, and S. Röllke. 2003. Application of broad-range 16S rRNA PCR amplification and DGGE fingerprinting for detection of tick-infecting bacteria. J. Microbiol. Methods 52:251-260.
    • (2003) J. Microbiol. Methods , vol.52 , pp. 251-260
    • Claudia, S.G.1    Lubitz, W.2    Röllke, S.3
  • 8
    • 28044457197 scopus 로고    scopus 로고
    • Synchrony and seasonality in bacterioplankton communities of two temperate rivers
    • Crump, B.C., and J.E. Hobbie. 2005. Synchrony and seasonality in bacterioplankton communities of two temperate rivers. Limnol. Oceanogr. 50:1718-1729.
    • (2005) Limnol. Oceanogr , vol.50 , pp. 1718-1729
    • Crump, B.C.1    Hobbie, J.E.2
  • 11
    • 17644439150 scopus 로고    scopus 로고
    • Bacterioplankton compositions of lakes and oceans: A first comparison based on fluorescence in situ hybridization
    • Glöckner, F.O., B.M. Fuchs, and R. Amann. 1999. Bacterioplankton compositions of lakes and oceans: A first comparison based on fluorescence in situ hybridization. Appl. Environ. Microbiol. 65:3721-3726.
    • (1999) Appl. Environ. Microbiol , vol.65 , pp. 3721-3726
    • Glöckner, F.O.1    Fuchs, B.M.2    Amann, R.3
  • 12
    • 0033754255 scopus 로고    scopus 로고
    • Comparative 16S rRNA analysis of lake bacterioplankton reveals globally distributed phylogenetic clusters including an abundant group of actinobacteria
    • Glöckner, F.O., E. Zaichikov, N. Belkova, L. Denissova, J. Pernthaler, A. Pernthaler, and R. Amann. 2000. Comparative 16S rRNA analysis of lake bacterioplankton reveals globally distributed phylogenetic clusters including an abundant group of actinobacteria. Appl. Environ. Microbiol. 66:5053-5065.
    • (2000) Appl. Environ. Microbiol , vol.66 , pp. 5053-5065
    • Glöckner, F.O.1    Zaichikov, E.2    Belkova, N.3    Denissova, L.4    Pernthaler, J.5    Pernthaler, A.6    Amann, R.7
  • 13
    • 0035725498 scopus 로고    scopus 로고
    • The sporulation transcription factor Spo0A is required for biofilm development in Bacillus subtilis
    • Hamon, M.A., and B.A. Lazazzera. 2001. The sporulation transcription factor Spo0A is required for biofilm development in Bacillus subtilis. Mol. Micobiol. 42:1199-1209.
    • (2001) Mol. Micobiol , vol.42 , pp. 1199-1209
    • Hamon, M.A.1    Lazazzera, B.A.2
  • 14
    • 33846704237 scopus 로고    scopus 로고
    • Evolution of species interactions in a biofilm community
    • Hansen, S.K., P.B. Rainey, J.A.J. Haagensen, and S. Molin. 2007. Evolution of species interactions in a biofilm community. Nature 445:533-536.
    • (2007) Nature , vol.445 , pp. 533-536
    • Hansen, S.K.1    Rainey, P.B.2    Haagensen, J.A.J.3    Molin, S.4
  • 15
    • 0018929060 scopus 로고
    • Sensitivity to salts and organic compounds of soil bacteria isolated on diluted media
    • Hattori, R., and T. Hattori. 1980. Sensitivity to salts and organic compounds of soil bacteria isolated on diluted media. J. Gen. Appl. Microbiol. 26:1-14.
    • (1980) J. Gen. Appl. Microbiol , vol.26 , pp. 1-14
    • Hattori, R.1    Hattori, T.2
  • 17
    • 70349898248 scopus 로고    scopus 로고
    • Analysis of how a biofilm forms on the surface of the aquatic macrophyte Phragmites australis
    • Hiraki, A., Y. Tsuchiya, Y. Fukuda, T. Yamada, A. Kurniawan, and H. Morisaki. 2009. Analysis of how a biofilm forms on the surface of the aquatic macrophyte Phragmites australis. Microbes Environ. 24:265-272.
    • (2009) Microbes Environ , vol.24 , pp. 265-272
    • Hiraki, A.1    Tsuchiya, Y.2    Fukuda, Y.3    Yamada, T.4    Kurniawan, A.5    Morisaki, H.6
  • 18
    • 33745497402 scopus 로고    scopus 로고
    • Comparison of nitrogen-fixing bacterial flora of rice rhizosphere in the fields treated long-term with agrochemicals and non-agrochemicals
    • Hirano, K., M. Hayatsu, I. Nioh, and H. Nakai. 2001 Comparison of nitrogen-fixing bacterial flora of rice rhizosphere in the fields treated long-term with agrochemicals and non-agrochemicals. Microbes Environ. 16:155-160.
    • (2001) Microbes Environ , vol.16 , pp. 155-160
    • Hirano, K.1    Hayatsu, M.2    Nioh, I.3    Nakai, H.4
  • 19
    • 33644848886 scopus 로고    scopus 로고
    • Recurring seasonal dynamics of microbial communities in stream habitats
    • Hullar, M.A.J., L.A. Kaplan, and D.A. Stahl. 2006. Recurring seasonal dynamics of microbial communities in stream habitats. Appl. Environ. Microbiol. 72:713-722.
    • (2006) Appl. Environ. Microbiol , vol.72 , pp. 713-722
    • Hullar, M.A.J.1    Kaplan, L.A.2    Stahl, D.A.3
  • 20
    • 0032055715 scopus 로고    scopus 로고
    • Populations of pseudomonads and related bacteria associated with bottled non-carbonated mineral water
    • Jayasekara, N.Y., G.M. Heard, J.M. Cox, and G.H. Fleet. 1998. Populations of pseudomonads and related bacteria associated with bottled non-carbonated mineral water. Food Microbiol. 15:167-176.
    • (1998) Food Microbiol , vol.15 , pp. 167-176
    • Jayasekara, N.Y.1    Heard, G.M.2    Cox, J.M.3    Fleet, G.H.4
  • 22
    • 85013697243 scopus 로고    scopus 로고
    • Idenfication of endosymbiots in Oligobrachia mashikoi (Siboglinidae, Annelida)
    • Kubota, N., M. Kanemori, Y. Sasayama, M. Aida, and Y. Fukumori. 2007. Idenfication of endosymbiots in Oligobrachia mashikoi (Siboglinidae, Annelida). Microbes Environ. 22:136-144.
    • (2007) Microbes Environ , vol.22 , pp. 136-144
    • Kubota, N.1    Kanemori, M.2    Sasayama, Y.3    Aida, M.4    Fukumori, Y.5
  • 23
    • 77954365666 scopus 로고    scopus 로고
    • Endophytic bacterial diversity in roots of Phragmites australis in constructed Beijing Cuihu wetland (China)
    • Li, Y.H., J.N. Zhu, Z.H. Zhai, and Q. Zhang. 2010. Endophytic bacterial diversity in roots of Phragmites australis in constructed Beijing Cuihu wetland (China). FEMS Microbiol. 309:84-93.
    • (2010) FEMS Microbiol , vol.309 , pp. 84-93
    • Li, Y.H.1    Zhu, J.N.2    Zhai, Z.H.3    Zhang, Q.4
  • 24
    • 42049119586 scopus 로고    scopus 로고
    • Culturable endophytic bacterial flora of the maturing leaves and roots of the rice plants (Oriza sativa) cultivated in a paddy field
    • Mano, H., F. Tanaka, C. Nalamura, H. Kaga, and H. Morisaki. 2007. Culturable endophytic bacterial flora of the maturing leaves and roots of the rice plants (Oriza sativa) cultivated in a paddy field. Microbes Environ. 22:175-185.
    • (2007) Microbes Environ , vol.22 , pp. 175-185
    • Mano, H.1    Tanaka, F.2    Nalamura, C.3    Kaga, H.4    Morisaki, H.5
  • 25
    • 0026788212 scopus 로고
    • Study of the bacterial flora of a non-carbonated natural mineral water
    • Mavridou, A. 1992. Study of the bacterial flora of a non-carbonated natural mineral water. J. Appl. Bacteriol. 73:355-361.
    • (1992) J. Appl. Bacteriol , vol.73 , pp. 355-361
    • Mavridou, A.1
  • 26
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified gene coding for 16S rRNA
    • Muyzer, G., E.C. de Waal, and A.G. Uitterkinden. 1993. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified gene coding for 16S rRNA. Appl. Environ. Microbiol. 59:695-700.
    • (1993) Appl. Environ. Microbiol , vol.59 , pp. 695-700
    • Muyzer, G.1    de Waal, E.C.2    Uitterkinden, A.G.3
  • 27
    • 42149093762 scopus 로고    scopus 로고
    • Alphaproteobacterial dominance in a large mesotrophic lake (Lake Biwa, Japan)
    • Nishimura, Y., and T. Nagata. 2007. Alphaproteobacterial dominance in a large mesotrophic lake (Lake Biwa, Japan). Aquat. Microbial Ecol. 48:231-240.
    • (2007) Aquat. Microbial Ecol , vol.48 , pp. 231-240
    • Nishimura, Y.1    Nagata, T.2
  • 28
    • 78650042374 scopus 로고    scopus 로고
    • A Great Leap forward in Microbial Ecology
    • Okabe, S., M. Oshiki, Y. Kamagata, et al. 2010. A Great Leap forward in Microbial Ecology. Microbes Environ. 25:230-240.
    • (2010) Microbes Environ , vol.25 , pp. 230-240
    • Okabe, S.1    Oshiki, M.2    Kamagata, Y.3
  • 30
    • 4143094955 scopus 로고    scopus 로고
    • Spectroscopic study of extracellular polymeric substances from Bacillus subtilis: Aqueous chemistry and adsorption effects
    • Omoike, A., and J. Chorover. 2004. Spectroscopic study of extracellular polymeric substances from Bacillus subtilis: Aqueous chemistry and adsorption effects. Biomacromol. 5:1219-1230.
    • (2004) Biomacromol , vol.5 , pp. 1219-1230
    • Omoike, A.1    Chorover, J.2
  • 31
    • 34248219166 scopus 로고    scopus 로고
    • Dominance of endosporeforming bacteria on a rotating activated Bacillus contactor biofilm for advanced wastewater treatment
    • Park, S.J., J.C. Yoon, K. Shin, et al. 2007. Dominance of endosporeforming bacteria on a rotating activated Bacillus contactor biofilm for advanced wastewater treatment. J. Microbiol. 45:113-121.
    • (2007) J. Microbiol , vol.45 , pp. 113-121
    • Park, S.J.1    Yoon, J.C.2    Shin, K.3
  • 32
    • 34249794867 scopus 로고    scopus 로고
    • Spatial patterns of DNA replication, protein synthesis, and oxygen concentration within bacterial biofilms reveal diverse physiological states
    • Rani, S.A., B. Pitts, H. Beyenal, R.A. Veluchamy, Z. Lewandowski, W.M. Davison, K. Buckingham-Meyer, and P.S. Stewart. 2007. Spatial patterns of DNA replication, protein synthesis, and oxygen concentration within bacterial biofilms reveal diverse physiological states. J. Bacteriol. 189:4223-4233.
    • (2007) J. Bacteriol , vol.189 , pp. 4223-4233
    • Rani, S.A.1    Pitts, B.2    Beyenal, H.3    Veluchamy, R.A.4    Lewandowski, Z.5    Davison, W.M.6    Buckingham-Meyer, K.7    Stewart, P.S.8
  • 34
    • 18444363645 scopus 로고    scopus 로고
    • Influence of top-down and bottomup manipulations on the R-BT065 subcluster of betaproteobacteria, an abundant group in bacterioplankton of a freshwater reservoir
    • Simek, K., K. Hornak, J. Jezbera, M. Masin, J. Nedoma, J.M. Gasol, and M. Schauer. 2005. Influence of top-down and bottomup manipulations on the R-BT065 subcluster of betaproteobacteria, an abundant group in bacterioplankton of a freshwater reservoir. Appl. Environ. Microbiol. 71:2381-2390.
    • (2005) Appl. Environ. Microbiol , vol.71 , pp. 2381-2390
    • Simek, K.1    Hornak, K.2    Jezbera, J.3    Masin, M.4    Nedoma, J.5    Gasol, J.M.6    Schauer, M.7
  • 35
    • 0031827673 scopus 로고    scopus 로고
    • Union of the genera Microbacterium Orla-Jensen and Aureobacterium Collins et al. in a redefined genus Microbacterium
    • Takeuchi, M., and K. Hatano. 1998. Union of the genera Microbacterium Orla-Jensen and Aureobacterium Collins et al. in a redefined genus Microbacterium. Int. J. Syst. Bacteriol. 48:739-747.
    • (1998) Int. J. Syst. Bacteriol , vol.48 , pp. 739-747
    • Takeuchi, M.1    Hatano, K.2
  • 36
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson, J.D., T.J. Gibson, F. Plewniak, F. Jeanmougin, and D.G. Higgins. 1997. The CLUSTAL X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25:4876-4882.
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 37
    • 32044467100 scopus 로고    scopus 로고
    • Paenibacillus Polymyxa Invades Plant Roots and Forms Biofilms
    • Timmusk, S., N. Grantcharova, and E.G.H. Wagner. 2005. Paenibacillus polymyxa invades plant roots and forms biofilms. Appl. Environ. Micobiol. 71:7292-7300.
    • (2005) Appl. Environ. Micobiol , vol.71 , pp. 7292-7300
    • Timmusk, S.1    Grantcharova, N.2    Wagner, E.G.H.3
  • 38
    • 84950351930 scopus 로고
    • Multidimensional scaling: 1 theory and method
    • Togerson, W.S. 1972. Multidimensional scaling: 1 theory and method. Psychometrika 17:401-419.
    • (1972) Psychometrika , vol.17 , pp. 401-419
    • Togerson, W.S.1
  • 41
    • 20444400602 scopus 로고    scopus 로고
    • Characterization of bacterial communities in four freshwater lakes differing in nutrient load and food web structure
    • Van der Gucht, K., T. Vandekerckhove, N. Vloemans, et al. 2005. Characterization of bacterial communities in four freshwater lakes differing in nutrient load and food web structure. FEMS Microbiol. Ecol. 53:205-220.
    • (2005) FEMS Microbiol. Ecol , vol.53 , pp. 205-220
    • van der Gucht, K.1    Vandekerckhove, T.2    Vloemans, N.3
  • 42
    • 33646011232 scopus 로고    scopus 로고
    • Effects of phosphorelay perturbations on architecture, sporulation, and spore resistance in biofilms of Bacillus subtilis
    • Veening, J.-W., O.P. Kuipers, S. Brul, K.J. Hellingwerf, and R. Kort. 2006. Effects of phosphorelay perturbations on architecture, sporulation, and spore resistance in biofilms of Bacillus subtilis. J. Bacteriol. 188:3099-3109.
    • (2006) J. Bacteriol , vol.188 , pp. 3099-3109
    • Veening, J.-W.1    Kuipers, O.P.2    Brul, S.3    Hellingwerf, K.J.4    Kort, R.5
  • 43
    • 0028821186 scopus 로고
    • Bioaccumulation of the herbicide diclofop in extracellular polymers and its utilization by a biofilm community during starvation
    • Wolfaadrt, G.M., J.R. Lawrence, R.D. Robarts, and D.E. Caldwell. 1995. Bioaccumulation of the herbicide diclofop in extracellular polymers and its utilization by a biofilm community during starvation. Appl. Environ. Microbiol. 61:152-158.
    • (1995) Appl. Environ. Microbiol , vol.61 , pp. 152-158
    • Wolfaadrt, G.M.1    Lawrence, J.R.2    Robarts, R.D.3    Caldwell, D.E.4
  • 44
    • 34347377993 scopus 로고    scopus 로고
    • Bacterial flora of the biofilm formed on the submerged surface of the reed Phragmites australis
    • Yamamoto, M., H. Murai, A. Takeda, S. Okunishi, and H. Morisaki. 2005. Bacterial flora of the biofilm formed on the submerged surface of the reed Phragmites australis. Microbes Environ. 20:14-24.
    • (2005) Microbes Environ , vol.20 , pp. 14-24
    • Yamamoto, M.1    Murai, H.2    Takeda, A.3    Okunishi, S.4    Morisaki, H.5


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