-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403-410
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
78650743376
-
Phylogenetic and genetic variation among Fe(II)-oxidizing acidithiobacilli supports the view that these comprise multiple species with different ferrous iron oxidation pathways
-
Amouric A, Brochier-Armanet C, Johnson DB, Bonnefoy V, Hallberg KB (2011) Phylogenetic and genetic variation among Fe(II)-oxidizing acidithiobacilli supports the view that these comprise multiple species with different ferrous iron oxidation pathways. Microbiology 157:111-122
-
(2011)
Microbiology
, vol.157
, pp. 111-122
-
-
Amouric, A.1
Brochier-Armanet, C.2
Johnson, D.B.3
Bonnefoy, V.4
Hallberg, K.B.5
-
3
-
-
77649223742
-
Structure, function, and evolution of the Thiomonas spp. genome
-
Arsene-Ploetze F, Koechler S, Marchal M, Coppee JY, Chandler M, Bonnefoy V, Brochier-Armanet C, Barakat M, Barbe V, Battaglia-Brunet F, Bruneel O, Bryan CG, Cleiss-Arnold J, Cruveiller S, Erhardt M, Heinrich-Salmeron A, Hommais F, Joulian C, Krin E, Lieutaud A, Lievremont D, Michel C, Muller D, Ortet P, Proux C, Siguier P, Roche D, Rouy Z, Salvignol G, Slyemi D, Talla E, Weiss S, Weissenbach J, Medigue C, Bertin PN (2010) Structure, function, and evolution of the Thiomonas spp. genome. PLoS Genet 6:e1000859
-
(2010)
PLoS Genet
, vol.6
-
-
Arsene-Ploetze, F.1
Koechler, S.2
Marchal, M.3
Coppee, J.Y.4
Chandler, M.5
Bonnefoy, V.6
Brochier-Armanet, C.7
Barakat, M.8
Barbe, V.9
Battaglia-Brunet, F.10
Bruneel, O.11
Bryan, C.G.12
Cleiss-Arnold, J.13
Cruveiller, S.14
Erhardt, M.15
Heinrich-Salmeron, A.16
Hommais, F.17
Joulian, C.18
Krin, E.19
Lieutaud, A.20
Lievremont, D.21
Michel, C.22
Muller, D.23
Ortet, P.24
Proux, C.25
Siguier, P.26
Roche, D.27
Rouy, Z.28
Salvignol, G.29
Slyemi, D.30
Talla, E.31
Weiss, S.32
Weissenbach, J.33
Medigue, C.34
Bertin, P.N.35
more..
-
4
-
-
33646052829
-
Oxidation of arsenite by Thiomonas strains and characterization of Thiomonas arsenivorans sp. nov
-
Battaglia-Brunet F, Joulian C, Garrido F, Dictor MC, Morin D, Coupland K, Johnson DB, Hallberg KB, Baranger P (2006) Oxidation of arsenite by Thiomonas strains and characterization of Thiomonas arsenivorans sp. nov. Antonie Van Leeuwenhoek 89:1-10
-
(2006)
Antonie Van Leeuwenhoek
, vol.89
, pp. 1-10
-
-
Battaglia-Brunet, F.1
Joulian, C.2
Garrido, F.3
Dictor, M.C.4
Morin, D.5
Coupland, K.6
Johnson, D.B.7
Hallberg, K.B.8
Baranger, P.9
-
5
-
-
33644940187
-
Oxidation of iron, sulfur and arsenic in mine waters and mine wastes: An important role for novel Thiomonas spp
-
Tsezos M, Remoudaki E, Hatzikioseyian A (eds) National Technical University of Athens, Zografou, Greece, Athens, Greece
-
Coupland K, Battaglia-Brunet F, Hallberg KB, Dictor MC, Garrido F, Johnson DB (2003) Oxidation of iron, sulfur and arsenic in mine waters and mine wastes: an important role for novel Thiomonas spp. In: Tsezos M, Remoudaki E, Hatzikioseyian A (eds) Biohydrometallurgy; a sustainable technology in evolution. National Technical University of Athens, Zografou, Greece, Athens, Greece, pp 639-646
-
(2003)
Biohydrometallurgy; A Sustainable Technology in Evolution
, pp. 639-646
-
-
Coupland, K.1
Battaglia-Brunet, F.2
Hallberg, K.B.3
Dictor, M.C.4
Garrido, F.5
Johnson, D.B.6
-
7
-
-
38149093947
-
Arsenite oxidation by a chemoautotrophic moderately acidophilic Thiomonas sp.: From the strain isolation to the gene study
-
Duquesne K, Lieutaud A, Ratouchniak J, Muller D, Lett MC, Bonnefoy V (2008) Arsenite oxidation by a chemoautotrophic moderately acidophilic Thiomonas sp.: from the strain isolation to the gene study. Environ Microbiol 10:228-237
-
(2008)
Environ Microbiol
, vol.10
, pp. 228-237
-
-
Duquesne, K.1
Lieutaud, A.2
Ratouchniak, J.3
Muller, D.4
Lett, M.C.5
Bonnefoy, V.6
-
8
-
-
33846555715
-
DNA-DNA hybridization values and their relationship to whole-genome sequence similarities
-
DOI 10.1099/ijs.0.64483-0
-
Goris J, Konstantinidis KT, Klappenbach JA, Coenye T, Vandamme P, Tiedje JM (2007) DNA-DNA hybridization values and their relationship to whole-genome sequence similarities. Int J Syst Evol Microbiol 57:81-91 (Pubitemid 46152735)
-
(2007)
International Journal of Systematic and Evolutionary Microbiology
, vol.57
, Issue.1
, pp. 81-91
-
-
Goris, J.1
Konstantinidis, K.T.2
Klappenbach, J.A.3
Coenye, T.4
Vandamme, P.5
Tiedje, J.M.6
-
9
-
-
0141938368
-
Novel acidophiles isolated from moderately acidic mine drainage waters
-
Hallberg KB, Johnson DB (2003) Novel acidophiles isolated from moderately acidic mine drainage waters. Hydrometallurgy 71:139-148
-
(2003)
Hydrometallurgy
, vol.71
, pp. 139-148
-
-
Hallberg, K.B.1
Johnson, D.B.2
-
10
-
-
0025198339
-
Thiobacillus cuprinus sp. nov., a novel facultatively organotrophic metal-mobilizing bacterium
-
Huber H, Stetter KO (1990) Thiobacillus cuprinus sp. nov., a novel facultatively organotrophic metal-mobilizing bacterium. Appl Environ Microbiol 56:315-322 (Pubitemid 20055297)
-
(1990)
Applied and Environmental Microbiology
, vol.56
, Issue.2
, pp. 315-322
-
-
Huber, H.1
Stetter, K.O.2
-
11
-
-
13444259388
-
TREEFINDER: A powerful graphical analysis environment for molecular phylogenetics
-
Jobb G, von Haeseler A, Strimmer K (2004) TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics. BMC Evol Biol 4:18
-
(2004)
BMC Evol Biol
, vol.4
, pp. 18
-
-
Jobb, G.1
Von Haeseler, A.2
Strimmer, K.3
-
12
-
-
75249094081
-
Extremophiles: Acidic environments
-
Schaechter M (ed) Elsevier, Oxford
-
Johnson DB (2009) Extremophiles: acidic environments. In: Schaechter M (ed) Encyclopaedia of microbiology. Elsevier, Oxford, pp 107-126
-
(2009)
Encyclopaedia of Microbiology
, pp. 107-126
-
-
Johnson, D.B.1
-
13
-
-
84920081524
-
Techniques for detecting and identifying acidophilic mineral-oxidizing microorganisms
-
Rawlings DE, Johnson DB (eds) Springer, Berlin
-
Johnson DB, Hallberg KB (2007) Techniques for detecting and identifying acidophilic mineral-oxidizing microorganisms. In: Rawlings DE, Johnson DB (eds) Biomining. Springer, Berlin, pp 237-261
-
(2007)
Biomining
, pp. 237-261
-
-
Johnson, D.B.1
Hallberg, K.B.2
-
14
-
-
33751212458
-
Confirmation of Thiomonas delicata (formerly Thiobacillus delicatus) as a distinct species of the genus Thiomonas Moreira and Amils 1997 with comments on some species currently assigned to the genus
-
DOI 10.1099/ijs.0.64299-0
-
Katayama Y, Uchino Y, Wood AP, Kelly DP (2006) Confirmation of Thiomonas delicata (formerly Thiobacillus delicatus) as a distinct species of the genus Thiomonas Moreira and Amils 1997 with comments on some species currently assigned to the genus. Int J Syst Evol Microbiol 56:2553-2557 (Pubitemid 44782451)
-
(2006)
International Journal of Systematic and Evolutionary Microbiology
, vol.56
, Issue.11
, pp. 2553-2557
-
-
Katayama, Y.1
Uchino, Y.2
Wood, A.P.3
Kelly, D.P.4
-
15
-
-
33646072522
-
Emendation of Thiobacillus perometabolis London and Rittenberg 1967
-
Katayama-Fujimura Y, Kuraishi H (1983) Emendation of Thiobacillus perometabolis London and Rittenberg 1967. Int J Syst. Bacteriol 33:650-651
-
(1983)
Int J Syst. Bacteriol
, vol.33
, pp. 650-651
-
-
Katayama-Fujimura, Y.1
Kuraishi, H.2
-
16
-
-
0021075288
-
Deoxyribonucleic acid homologies among species of the genus Thiobacillus
-
Katayama-Fujimura Y, Enokizono Y, Kaneko T, Kuraishi H (1983) Deoxyribonucleic acid homologies among species of the genus Thiobacillus. J Gen Appl Microbiol 29:287-295 (Pubitemid 14176927)
-
(1983)
Journal of General and Applied Microbiology
, vol.29
, Issue.4
, pp. 287-295
-
-
Katayama, F.Y.1
Enokizono, Y.2
Kaneko, T.3
Kuraishi, H.4
-
17
-
-
0021256652
-
Physiological characteristics of the facultatively chemolithotrophic Thiobacillus species Thiobacillus delicatus nom. rev., emend., Thiobacillus perometabolis, and Thiobacillus intermedius
-
Katayama-Fujimura Y, Kawashima I, Tsuzaki N, Kuraishi H (1984) Physiological characteristics of the facultatively chemolithotrophic Thiobacillus species Thiobacillus delicatus nom. rev., emend. Thiobacillus perometabolis, and Thiobacillus intermedius. Int J Syst Bacteriol 34:139-144 (Pubitemid 14103600)
-
(1984)
International Journal of Systematic Bacteriology
, vol.34
, Issue.2
, pp. 139-144
-
-
Katayama-Fujimura, Y.1
Kawashima, I.2
Tsuzaki, N.3
Kuraishi, H.4
-
18
-
-
36549062930
-
Reassessment of the phylogenetic relationships of Thiomonas cuprina
-
DOI 10.1099/ijs.0.65537-0
-
Kelly DP, Uchino Y, Huber H, Amils R, Wood AP (2007) Reassessment of the phylogenetic relationships of Thiomonas cuprina. Int J Syst Evol Microbiol 57:2720-2724 (Pubitemid 350187445)
-
(2007)
International Journal of Systematic and Evolutionary Microbiology
, vol.57
, Issue.11
, pp. 2720-2724
-
-
Kelly, D.P.1
Uchino, Y.2
Huber, H.3
Amils, R.4
Wood, A.P.5
-
19
-
-
33645293434
-
Sulfidogenesis in low pH (3.8-4.2) media by a mixed population of acidophilic bacteria
-
Kimura S, Hallberg KB, Johnson DB (2006) Sulfidogenesis in low pH (3.8-4.2) media by a mixed population of acidophilic bacteria. Biodegradation 17:57-65
-
(2006)
Biodegradation
, vol.17
, pp. 57-65
-
-
Kimura, S.1
Hallberg, K.B.2
Johnson, D.B.3
-
20
-
-
36448991500
-
Clustal W and Clustal X version 2.0
-
DOI 10.1093/bioinformatics/btm404
-
Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG (2007) Clustal W and clustal X version 2.0. Bioinformatics 23:2947-2948 (Pubitemid 350162903)
-
(2007)
Bioinformatics
, vol.23
, Issue.21
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
Mcgettigan, P.A.5
McWilliam, H.6
Valentin, F.7
Wallace, I.M.8
Wilm, A.9
Lopez, R.10
Thompson, J.D.11
Gibson, T.J.12
Higgins, D.G.13
-
21
-
-
0035253887
-
Genetic transfer of IncP, IncQ and IncW plasmids to four Thiobacillus ferrooxidans strain by conjugation
-
Liu Z, Borne F, Ratouchniak J, Bonnefoy V (2001) Genetic transfer of IncP, IncQ and IncW plasmids to four Thiobacillus ferrooxidans strain by conjugation. Hydrometallurgy 59:339-345
-
(2001)
Hydrometallurgy
, vol.59
, pp. 339-345
-
-
Liu, Z.1
Borne, F.2
Ratouchniak, J.3
Bonnefoy, V.4
-
22
-
-
0007696811
-
Thiobacillus intermedius nov. sp. A novel type of facultative autotroph
-
London J (1963) Thiobacillus intermedius nov. sp. A novel type of facultative autotroph. Arch Mikrobiol 46:329-337
-
(1963)
Arch Mikrobiol
, vol.46
, pp. 329-337
-
-
London, J.1
-
23
-
-
0014161350
-
Thiobacillus perometabolis nov. sp., a non-autotrophic thiobacillus
-
London J, Rittenberg SC (1967) Thiobacillus perometabolis nov. sp., a non-autotrophic thiobacillus. Arch Mikrobiol 59:218-225
-
(1967)
Arch Mikrobiol
, vol.59
, pp. 218-225
-
-
London, J.1
Rittenberg, S.C.2
-
24
-
-
0000816704
-
Rapid assay for microbially reducible ferric iron in aquatic sediments
-
Lovley DR, Phillips EJ (1987) Rapid assay for microbially reducible ferric iron in aquatic sediments. Appl Environ Microbiol 53:1536-1540
-
(1987)
Appl Environ Microbiol
, vol.53
, pp. 1536-1540
-
-
Lovley, D.R.1
Phillips, E.J.2
-
25
-
-
33750290454
-
Multilocus sequence typing of bacteria
-
Maiden MC (2006) Multilocus sequence typing of bacteria. Annu Rev Microbiol 60:561-588
-
(2006)
Annu Rev Microbiol
, vol.60
, pp. 561-588
-
-
Maiden, M.C.1
-
26
-
-
0007852171
-
New sulfur-oxidizing bacteria capable of growing heterotrophically, Thiobacillus rubellus nov. sp. and Thiobacillus delicatus nov. sp.
-
Mizoguchi T, Sato T, Okabe T (1976) New sulfur-oxidizing bacteria capable of growing heterotrophically, Thiobacillus rubellus nov. sp. and Thiobacillus delicatus nov. sp. J Ferment Technol 54:181-191
-
(1976)
J Ferment Technol
, vol.54
, pp. 181-191
-
-
Mizoguchi, T.1
Sato, T.2
Okabe, T.3
-
27
-
-
0030968533
-
Phylogeny of Thiobacillus cuprinus and other mixotrophic thiobacilli: Proposal for Thiomonas gen. nov
-
Moreira D, Amils R (1997) Phylogeny of Thiobacillus cuprinus and other mixotrophic thiobacilli: proposal for Thiomonas gen. nov. Int J Syst Bacteriol 47:522-528 (Pubitemid 27163922)
-
(1997)
International Journal of Systematic Bacteriology
, vol.47
, Issue.2
, pp. 522-528
-
-
Moreira, D.1
Amils, R.2
-
28
-
-
70350510082
-
Thiomonas bhubaneswarensis sp. nov. an obligately mixotrophic, moderately thermophilic, thiosulfate-oxidizing bacterium
-
Panda SK, Jyoti V, Bhadra B, Nayak KC, Shivaji S, Rainey FA, Das SK (2009) Thiomonas bhubaneswarensis sp. nov. an obligately mixotrophic, moderately thermophilic, thiosulfate-oxidizing bacterium. Int J Syst Evol Microbiol 59:2171-2175
-
(2009)
Int J Syst Evol Microbiol
, vol.59
, pp. 2171-2175
-
-
Panda, S.K.1
Jyoti, V.2
Bhadra, B.3
Nayak, K.C.4
Shivaji, S.5
Rainey, F.A.6
Das, S.K.7
-
29
-
-
0027494836
-
MUST, a computer package of Management Utilities for Sequences and Trees
-
Philippe H (1993) MUST, a computer package of Management Utilities for Sequences and Trees. Nucleic Acids Res 21:5264-5272
-
(1993)
Nucleic Acids Res
, vol.21
, pp. 5264-5272
-
-
Philippe, H.1
-
30
-
-
0041386108
-
MrBayes 3: Bayesian phylogenetic inference under mixed models
-
DOI 10.1093/bioinformatics/btg180
-
Ronquist F, Huelsenbeck JP (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572-1574 (Pubitemid 37038874)
-
(2003)
Bioinformatics
, vol.19
, Issue.12
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
31
-
-
0029918976
-
Isolation, phenotypic characterization, and phylogenetic position of a novel, facultatively autotrophic, moderately thermophilic bacterium, Thiobacillus thermosulfatus sp. nov
-
Shooner F, Bousquet J, Tyagi RD (1996) Isolation, phenotypic characterization, and phylogenetic position of a novel, facultatively autotrophic, moderately thermophilic bacterium, Thiobacillus thermosulfatus sp. nov. Int J Syst Bacteriol 46:409-415 (Pubitemid 26116221)
-
(1996)
International Journal of Systematic Bacteriology
, vol.46
, Issue.2
, pp. 409-415
-
-
Shooner, F.1
Bousquet, J.2
Tyagi, R.D.3
-
33
-
-
78651419782
-
Thiomonas islandica sp. nov., a novel moderately thermophilic hydrogen and sulfur oxidizing betaproteobacterium isolated from an Icelandic hot spring
-
Vesteinsdottir H, Reynisdottir DB, Orlygsson J (2011) Thiomonas islandica sp. nov., a novel moderately thermophilic hydrogen and sulfur oxidizing betaproteobacterium isolated from an Icelandic hot spring. Int J Syst Evol Microbiol 61:132-137
-
(2011)
Int J Syst Evol Microbiol
, vol.61
, pp. 132-137
-
-
Vesteinsdottir, H.1
Reynisdottir, D.B.2
Orlygsson, J.3
-
34
-
-
55549106834
-
Microbiological and geochemical dynamics in simulated-heap leaching of a polymetallic sulfide ore
-
Wakeman K, Auvinen H, Johnson DB (2008) Microbiological and geochemical dynamics in simulated-heap leaching of a polymetallic sulfide ore. Biotechnol Bioeng 101:739-750
-
(2008)
Biotechnol Bioeng
, vol.101
, pp. 739-750
-
-
Wakeman, K.1
Auvinen, H.2
Johnson, D.B.3
-
35
-
-
0000770675
-
Report of the ad hoc committee on reconciliation of approaches to bacterial systematics
-
Wayne LG, Brenner DJ, Colwell RR, Grimont PAD, Kandler O, Krichevsky MI, Moore LH, Moore WEC, Murray RGE, Stackebrandt E, Starr MP, Truper HG (1987) Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37:463-464
-
(1987)
Int J Syst Bacteriol
, vol.37
, pp. 463-464
-
-
Wayne, L.G.1
Brenner, D.J.2
Colwell, R.R.3
Grimont, P.A.D.4
Kandler, O.5
Krichevsky, M.I.6
Moore, L.H.7
Moore, W.E.C.8
Murray, R.G.E.9
Stackebrandt, E.10
Starr, M.P.11
Truper, H.G.12
|