Thiomonas bhubaneswarensis sp. nov., an obligately mixotrophic, moderately thermophilic, thiosulfate-oxidizing bacterium

International Journal of Systematic and Evolutionary Microbiology

Volumn 59, Issue 9, 2009, Pages 2171-2175

  Panda, Sujogya K ^a   Jyoti, V ^a   Bhadra, Bhaskar ^b   Nayak, Kinshuk C ^a   Shivaji, Sisinthy ^b   Rainey, Fred A ^c   Das, Subrata K ^a  

^a INSTITUTE OF LIFE SCIENCES   (India)

^b CENTRE FOR CELLULAR AND MOLECULAR BIOLOGY   (India)

^c LOUISIANA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; CATALASE; CYTOSINE; FATTY ACID; GUANOSINE; OXIDOREDUCTASE; RNA 16S; RIBOSOME DNA; THIOSULFATE;

AEROBIC BACTERIUM; ARTICLE; BACTERIAL FLAGELLUM; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATE; CELL MOTILITY; CELL SHAPE; CHEMOTAXONOMY; CONTROLLED STUDY; DNA CONTENT; GENE CLUSTER; GENE SEQUENCE; GENETIC SIMILARITY; GRAM NEGATIVE BACTERIUM; MIXOTROPH; NEW GENUS; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE ANALYSIS; TEMPERATURE; THERMOPHILIC BACTERIUM; THIOMONAS; THIOMONAS BHUBANESWARENSIS; THIOMONAS INTERMEDIA; THIOMONAS PEROMETABOLIS; THIOSULFATE OXIDIZING BACTERIUM; AEROBIC METABOLISM; BACTERIUM IDENTIFICATION; BETAPROTEOBACTERIA; CHEMISTRY; CLASSIFICATION; CLUSTER ANALYSIS; DNA BASE COMPOSITION; DNA SEQUENCE; GENETICS; INDIA; ISOLATION AND PURIFICATION; LOCOMOTION; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS; NUCLEIC ACID HYBRIDIZATION; OXIDATION REDUCTION REACTION; PHYSIOLOGY; SEDIMENT; THERMAL SPRING;

BACTERIA (MICROORGANISMS); NEGIBACTERIA; THIOMONAS; THIOMONAS INTERMEDIA; THIOMONAS PEROMETABOLIS;

AEROBIOSIS; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; BETAPROTEOBACTERIA; CATALASE; CLUSTER ANALYSIS; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; GEOLOGIC SEDIMENTS; HOT SPRINGS; HYDROGEN-ION CONCENTRATION; INDIA; LOCOMOTION; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; OXIDATION-REDUCTION; OXIDOREDUCTASES; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; TEMPERATURE; THIOSULFATES;

EID: 70350510082     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.007120-0     Document Type: Article

References (30)

1. Altschul, S. F., Madden, T. L., Schäffer, A. A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D. J. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25, 3389-3402.
2. Bhadra, B., Raghukumar, C., Pindi, P. K. & Shivaji, S. (2008). Brevibacterium oceani sp. nov., isolated from deep-sea sediment of the Chagos Trench, Indian Ocean. Int J Syst Evol Microbiol 58, 57-60.
3. Cruickshank, R., Duguid, J. P., Marmion, B. P. & Swain, R. H. A. (editors) (1975). In Medical Microbiology, 12th edn, vol. 2, The Practice of Medical Microbiology, pp. 301-310. Edinburgh: Churchill Livingstone.
4. Das, S. K., Mishra, A. K., Tindall, B. J., Rainey, F. A. & Stackebrandt, E. (1996). Oxidation of thiosulfate by a new bacterium, Bosea thiooxidans (strain BI-42) gen. nov., sp. nov.: analysis of phylogeny based on chemotaxonomy and 16S ribosomal DNA sequencing. Int J Syst Bacteriol 46, 981-987.
5. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
6. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
7. Ghosh, D., Bal, B., Kashyap, V. K. & Pal, S. (2003). Molecular phylogenetic exploration of bacterial diversity in a Bakreshwar (India) hot spring and culture of Shewanella-related thermophiles. Appl Environ Microbiol 69, 4332-4336.
8. Gupta, M. L., Narain, H. & Saxena, V. K. (1975). Geochemistry of thermal waters from various geothermal provinces of India. In Proceedings of the Grenoble Symposium of the International Association of Hydrological Sciences, pp. 47-58. Wallingford, UK: IAHS Press.
9. Huber, H. & Stetter, K. O. (1990). Thiobacillus cuprinus sp. nov., a novel facultatively organotrophic metal-mobilizing bacterium. Appl Environ Microbiol 56, 315-322.
10. Katayama, Y., Uchino, Y., Wood, A. P. & Kelly, D. P. (2006). Confirmation of Thiomonas delicata (formerly Thiobacillus delicatus) as a distinct species of the genus Thiomonas Moreira and Amils 1997 with comments on some species currently assigned to the genus. Int J Syst Evol Microbiol 56, 2553-2557.
11. Katayama-Fujimura, Y., Tsuzaki, N. & Kuraishi, H. (1982). Ubiquinone, fatty acid and DNA base composition determination as a guide to the taxonomy of the genus Thiobacillus. J Gen Microbiol 128, 1599-1611.
12. Katayama-Fujimura, Y., Kawashima, I., Tsuzaki, N. & Kuraishi, H. (1984). Physiological characteristics of the facultatively chemolithotrophic Thiobacillus species Thiobacillus delicatus nom. rev., emend., Thiobacillus perometabolis, and Thiobacillus intermedius. Int J Syst Bacteriol 34, 139-144.
13. VP. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 2, partC, pp. 757-759. Edited by D. J. Brenner, N. R. Krieg, J. T. Staley & G.M. Garrity. New York: Springer.
14. AL. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 2, part C, pp. 764-769. Edited by D. J. Brenner, N. R. Krieg, J. T. Staley & G. M. Garrity. New York: Springer.
15. Kelly, D. P., Uchino, Y., Huber, H., Amils, R. & Wood, A. P. (2007). Reassessment of the phylogenetic relationships of Thiomonas cuprina. Int J Syst Evol Microbiol 57, 2720-2724.
16. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
17. Kumar, S., Tamura, K. & Nei, M. (2004). MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5, 150-163.
18. Kuykendall, L. D., Roy, M. D., O'Neill, J. J. & Devine, T. E. (1988). Fatty acids, antibiotic resistance and deoxyribonucleic acid homology groups of Bradyrhizobium japonicum. Int J Syst Bacteriol 38, 358-361.
19. Maidak, B. L., Olsen, G. J., Larsen, N., Overbeek, R., McCaughey, M. J. & Woese, C. R. (1997). The RDP (Ribosomal Database Project). Nucleic Acids Res 25, 109-111.
20. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
21. Moreira, D. & Amils, R. (1997). Phylogeny of Thiobacillus cuprinus and other mixotrophic thiobacilli: proposal for Thiomonas gen. nov. Int J Syst Bacteriol 47, 522-528.
22. Moreira, C., Rainey, F. A., Nobre, M. F., da Silva, M. T. & da Costa, M. S. (2000). Tepidimonas ignava gen. nov., sp. nov., a new chemolithoheterotrophic and slightly thermophilic member of the β-Proteobacteria. Int J Syst Evol Microbiol 50, 735-742.
23. Odintsova, E. V., Jannasch, H. W., Mamone, J. A. & Langworthy, T. A. (1996). Thermothrix azorensis sp. nov., an obligately chemolithoautotrophic, sulfur-oxidizing, thermophilic bacterium. Int J Syst Bacteriol 46, 422-428.
24. Patra, M., Pandey, S. K., Ramamurthy, T., Singh, D. V. & Das, S. K. (2007). Characterization of cytotoxin-producing Aeromonas caviae (strain HT10) isolated from a sulfur spring in Orissa, India. Lett Appl Microbiol 44, 338-341.
25. Sharma, D. P., Thomas, C., Hall, R. H., Levine, M. M. & Attridge, S. R. (1989). Significance of toxin coregulated pili as protective antigens of Vibrio cholerae in the infant mouse model. Vaccine 7, 451-456.
26. Shooner, F., Bousquet, J. & Tyagi, R. D. (1996). Isolation, phenotypic characterization, and phylogenetic position of a novel, facultatively autotrophic, moderately thermophilic bacterium, Thiobacillus thermosulfatus sp. nov. Int J Syst Bacteriol 46, 409-415.
27. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
28. Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125-128.
29. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
30. Wood, A. P. & Kelly, D. P. (1988). Isolation and physiological characterisation of Thiobacillus aquaesulis sp. nov., a novel facultatively autotrophic moderate thermophile. Arch Microbiol 149, 339-343.