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Volumn 134, Issue 20, 2011, Pages

Integrating steepest-descent reaction pathways for large molecules

Author keywords

[No Author keywords available]

Indexed keywords

ATOMIC CENTERS; COST PROHIBITIVE; DIAGONALIZATIONS; ENZYME-CATALYZED REACTIONS; LARGE SYSTEM; MATRIX; MODEL CHEMISTRY; MOLECULAR SYSTEMS; PREDICTOR CORRECTOR; REACTION PATHS; REACTION PATHWAYS;

EID: 79958092055     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.3593456     Document Type: Article
Times cited : (33)

References (86)
  • 2
  • 3
    • 0042797442 scopus 로고    scopus 로고
    • (Cambridge University Press, Cambridge, England).
    • D. J. Wales, Energy Landscapes (Cambridge University Press, Cambridge, England, 2003).
    • (2003) Energy Landscapes
    • Wales, D.J.1
  • 4
    • 0002203628 scopus 로고    scopus 로고
    • in, Vol. 4, edited by P. V. R. Schleyer, N. L. Allinger, P. A. Kollman, T. Clark, H. F. Schaefer III, J. Gasteiger, and P. R. Schreiner (Wiley, Chichester) p
    • H. B. Schlegel, in Encyclopedia of Computational Chemistry, Vol. 4, edited by, P. V. R. Schleyer, N. L. Allinger, P. A. Kollman, T. Clark, H. F. Schaefer III, J. Gasteiger, and, P. R. Schreiner, (Wiley, Chichester, 1998) pp. 2432-2437.
    • (1998) Encyclopedia of Computational Chemistry , pp. 2432-2437
    • Schlegel, H.B.1
  • 5
    • 0001360251 scopus 로고    scopus 로고
    • 10.1002/SERIES2007
    • M. A. Collins, Adv. Chem. Phys. 93, 389 (1996). 10.1002/SERIES2007
    • (1996) Adv. Chem. Phys. , vol.93 , pp. 389
    • Collins, M.A.1
  • 6
    • 0001201115 scopus 로고
    • 10.1039/ft9949001569
    • H. B. Schlegel, Faraday Discuss. 90, 1569 (1994). 10.1039/ft9949001569
    • (1994) Faraday Discuss. , vol.90 , pp. 1569
    • Schlegel, H.B.1
  • 7
    • 33751044609 scopus 로고
    • 10.1021/ar00072a001
    • K. Fukui, Acc. Chem. Res. 14, 363 (1981). 10.1021/ar00072a001
    • (1981) Acc. Chem. Res. , vol.14 , pp. 363
    • Fukui, K.1
  • 9
    • 0000555349 scopus 로고    scopus 로고
    • in, Vol. 2, edited by P. V. R. Schleyer, N. L. Allinger, P. A. Kollman, T. Clark, H. F. Schaefer III, J. Gasteiger, and P. R. Schreiner (Wiley, Chichester) p
    • E. Kraka, in Encyclopedia of Computational Chemistry, Vol. 2, edited by, P. V. R. Schleyer, N. L. Allinger, P. A. Kollman, T. Clark, H. F. Schaefer III, J. Gasteiger, and, P. R. Schreiner, (Wiley, Chichester, 1998) pp. 2437-2463.
    • (1998) Encyclopedia of Computational Chemistry , pp. 2437-2463
    • Kraka, E.1
  • 10
    • 0000036541 scopus 로고    scopus 로고
    • in, Vol. 2, edited by P. V. R. Schleyer, N. L. Allinger, P. A. Kollman, T. Clark, H. F. Schaefer III, J. Gasteiger, and P. R. Schreiner (Wiley, Chichester) p
    • B. C. Garrett and D. G. Truhlar, in Encyclopedia of Computational Chemistry, Vol. 2, edited by, P. V. R. Schleyer, N. L. Allinger, P. A. Kollman, T. Clark, H. F. Schaefer III, J. Gasteiger, and, P. R. Schreiner, (Wiley, Chichester, 1998) pp. 3094-3104.
    • (1998) Encyclopedia of Computational Chemistry , pp. 3094-3104
    • Garrett, B.C.1    Truhlar, D.G.2
  • 29
    • 0034321020 scopus 로고    scopus 로고
    • Proton transfer in bacteriorhodopsin: Structure, excitation, IR spectra, and potential energy surface analyses by an ab initio QM/MM method
    • DOI 10.1021/jp001508r
    • S. Hayashi and I. Ohmine, J. Phys. Chem. B 104, 10678 (2000). 10.1021/jp001508r (Pubitemid 32021481)
    • (2000) Journal of Physical Chemistry B , vol.104 , Issue.45 , pp. 10678-10691
    • Hayashi, S.1    Ohmine, I.2
  • 30
    • 0001664118 scopus 로고    scopus 로고
    • 10.10 02/1096-98 7X(2000 12)21:161 442::AID-JC C33.0.CO;2-O
    • R. B. Murphy, D. M. Philipp, and R. A. Friesner, J. Comput. Chem. 21, 1442 (2000). 10.1002/1096-987X(200012)21:161442::AID-JCC33.0.CO;2-O
    • (2000) J. Comput. Chem. , vol.21 , pp. 1442
    • Murphy, R.B.1    Philipp, D.M.2    Friesner, R.A.3
  • 34
    • 15544388511 scopus 로고    scopus 로고
    • Computing kinetic isotope effects for chorismate mutase with high accuracy. A new DFT/MM strategy
    • DOI 10.1021/jp044387u
    • S. Marti, V. Moliner, M. Tunon, and I. H. Williams, J. Phys. Chem. B 109, 3707 (2005). 10.1021/jp044387u (Pubitemid 40402244)
    • (2005) Journal of Physical Chemistry B , vol.109 , Issue.9 , pp. 3707-3710
    • Marti, S.1    Moliner, V.2    Tunon, I.3    Williams, I.H.4
  • 41
    • 0037156101 scopus 로고    scopus 로고
    • A Hamiltonian electrostatic coupling scheme for hybrid Car-Parrinello molecular dynamics simulations
    • DOI 10.1063/1.1462041
    • A. Laio, J. Vande Vondele, and U. Rothlisberger, J. Chem. Phys. 116, 6941 (2002). 10.1063/1.1462041 (Pubitemid 34537077)
    • (2002) Journal of Chemical Physics , vol.116 , Issue.16 , pp. 6941-6947
    • Laio, A.1    VandeVondele, J.2    Rothlisberger, U.3
  • 51
    • 43949083733 scopus 로고    scopus 로고
    • Free energies of chemical reactions in solution and in enzymes with ab initio quantum mechanics/molecular mechanics methods
    • DOI 10.1146/annurev.physchem.59.032607.093618
    • H. Hu and W. T. Yang, Annu. Rev. Phys. Chem. 59, 573 (2008). 10.1146/annurev.physchem.59.032607.093618 (Pubitemid 351703398)
    • (2008) Annual Review of Physical Chemistry , vol.59 , pp. 573-601
    • Hu, H.1    Yang, W.2
  • 54
    • 18644375413 scopus 로고    scopus 로고
    • Reaction path determination for quantum mechanical/molecular mechanical modeling of enzyme reactions by combining first order and second order "chain-of-replicas" methods
    • DOI 10.1063/1.1860560, 114502
    • G. A. Cisneros, H. Y. Liu, Z. Y. Lu, and W. T. Yang, J. Chem. Phys. 122, 114502 (2005). 10.1063/1.1860560 (Pubitemid 40661764)
    • (2005) Journal of Chemical Physics , vol.122 , Issue.11 , pp. 1-7
    • Cisneros, G.A.1    Liu, H.2    Lu, Z.3    Yang, W.4
  • 59
  • 70
    • 0000726743 scopus 로고    scopus 로고
    • 10.10 02/(SICI)1 096-987X(19 9802)19:33 49::AID-JCC8>3.3.CO;2-V
    • J. M. Anglada and J. M. Bofill, J. Comput. Chem. 19, 349 (1998). 10.1002/(SICI)1096-987X(199802)19:3349::AID-JCC8>3.3.CO;2-V
    • (1998) J. Comput. Chem. , vol.19 , pp. 349
    • Anglada, J.M.1    Bofill, J.M.2
  • 71
    • 84986513718 scopus 로고
    • 10.1002/jcc.540150102
    • J. M. Bofill, J. Comput. Chem. 15, 1 (1994). 10.1002/jcc.540150102
    • (1994) J. Comput. Chem. , vol.15 , pp. 1
    • Bofill, J.M.1
  • 74
    • 34548044247 scopus 로고    scopus 로고
    • 2 binding in non-heme iron enzyme. An insight from ONIOM calculations on isopenicillin N synthase (IPNS)
    • DOI 10.1021/jp071878g
    • M. Lundberg and K. Morokuma, J. Phys. Chem. B 111, 9380 (2007). 10.1021/jp071878g (Pubitemid 47280539)
    • (2007) Journal of Physical Chemistry B , vol.111 , Issue.31 , pp. 9380-9389
    • Lundberg, M.1    Morokuma, K.2
  • 80
    • 84986439201 scopus 로고
    • 10.1002/jcc.540030212
    • H. B. Schlegel, J. Comput. Chem. 3, 214 (1982). 10.1002/jcc.540030212
    • (1982) J. Comput. Chem. , vol.3 , pp. 214
    • Schlegel, H.B.1
  • 82
    • 79958085626 scopus 로고    scopus 로고
    • 12 bohr.
    • 12 bohr.
  • 86
    • 79958103554 scopus 로고    scopus 로고
    • In the present case, the E g unit is equal to 6.52 min.
    • In the present case, the E g unit is equal to 6.52 min.


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.