Efficient virus-induced gene silencing in apple, pear and Japanese pear using Apple latent spherical virus vectors

Plant Methods

Volumn 7, Issue 1, 2011, Pages

  Sasaki, Shintarou ^a   Yamagishi, Noriko ^a   Yoshikawa, Nobuyuki ^a  

^a IWATE UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

APPLE LATENT SPHERICAL VIRUS; MALUS X DOMESTICA; PYRUS; PYRUS PYRIFOLIA VAR. CULTA; ROSACEAE;

EID: 79958081520     PISSN: None     EISSN: 17464811     Source Type: Journal    
DOI: 10.1186/1746-4811-7-15     Document Type: Article

References (51)

1. Lu R, Martin-Hernandez AM, Peart JR, Malcuit I, Baulcombe DC. Virus-induced gene silencing in plants. Methods 2003, 30:296-303. 10.1016/S1046-2023(03)00037-9, 12828943.
2. Waterhouse PM, Helliwell CA. Exploring plant genomes by RNA-induced gene silencing. Nat Rev Genet 2002, 4:29-38.
3. Benedito V, Visser PB, Angenebt GC, Krens FA. The potential of virus-induced gene silencing for speeding up functional characterization of plant genes. Gen Mol Res 2004, 3:323-341.
4. Burch-Smith TM, Anderson JC, Martin GB, Dinesh-Kumar SP. Applications and advantages of virus-induced gene silencing for gene function studies in plants. Plant J 2004, 39:734-746. 10.1111/j.1365-313X.2004.02158.x, 15315635.
5. Igarashi A, Yamagata K, Sugai T, Takahashi Y, Sugawara E, Tamura A, Yaegashi H, Yamagishi N, Takahashi T, Isogai M, Takahashi H, Yoshikawa N. Apple latent spherical virus vectors for reliable and effective virus-induced gene silencing among a broad range of plants infecting tobacco, tomato, Arabidopsis thaliana, cucurbits, and legumes. Virology 2009, 386:407-416. 10.1016/j.virol.2009.01.039, 19243807.
6. Brigneti G, Martin-Hernandez AM, Jin H, Chen J, Baulcombe DC, Baker B, Jones JDG. Virus-induced gene silencing in Solanum species. Plant J 2004, 39:264-272. 10.1111/j.1365-313X.2004.02122.x, 15225290.
7. Fu D-Q, Zhu B-Z, Zhu H-L, Jiang W-B, Luo Y-B. Virus-induced gene silencing in tomato fruit. Plant J 2005, 43:299-308. 10.1111/j.1365-313X.2005.02441.x, 15998315.
8. Liu Y, Schliff M, Dinesh-Kumar SP. Virus-induced gene silencing in tomato. Plant J 2002, 31:777-786. 10.1046/j.1365-313X.2002.01394.x, 12220268.
9. Constantin GD, Krath BN, MacFarlane SA, Nicolaisen M, Johansen IE, Lund OS. Virus-induced gene silencing as a tool for functional genomics in a legume species. Plant J 2004, 40:622-631. 10.1111/j.1365-313X.2004.02233.x, 15500476.
10. Zhang C, Ghabrial SA. Development of Bean pod mottle virus-based vectors for stable protein expression and sequence-specific virus-induced gene silencing in soybean. Virology 2006, 344:401-411. 10.1016/j.virol.2005.08.046, 16226780.
11. Holzberg S, Brosio P, Gross C, Pogue GP. Barley stripe mosaic virus-induced gene silencing in a monocot plant. Plant J 2002, 30:315-327. 10.1046/j.1365-313X.2002.01291.x, 12000679.
12. Fofana IBF, Sangare A, Collier R, Taylor C, Fauquet CM. A geminivirus-induced gene silencing system for gene function validation in cassava. Plant Mol Biol 2004, 56:613-624. 10.1007/s11103-004-0161-y, 15630624.
13. Ding XS, Schneider WL, Chaluvadi SR, Mian MAR, Nelson RS. Characterization of a Brome mosaic virus strain and its use as a vector for gene silencing in monocotyledonous hosts. Mol Plant-Microb Interact 2006, 11:1229-1239.
14. Bruun-Rasmussen M, Madsen CT, Jessing S, Albrechtsen M. Stability of Barley stripe mosaic virus-induced gene silencing in barley. MolPlant-Microb Interact 2007, 20:1323-1331.
15. Dong Y, Burch-Smith TM, Liu Y, Mamillapalli P, Dinesh-Kumar SP. A ligation-independent cloning tobacco rattle virus vector for high-throughput virus-induced gene silencing identifies roles for NbMADS4-1 and -2 in floral development. Plant Physiol 2007, 145:1161-1170. 10.1104/pp.107.107391, 2151726, 17932306.
16. Gossele V, Fache I, Meulewaeter F, Cornelissen M, Metzlaff M. SVISS - a novel transient gene silencing system for gene function discovery and validation in tobacco plants. Plant J 2002, 32:859-866. 10.1046/j.1365-313X.2002.01471.x, 12472699.
17. Purkayastha A, Dasgupta I. Virus-induced gene silencing: A versatile tool for discovery of gene functions in plants. Plant Physiol Biochem 2009, 47:967-976. 10.1016/j.plaphy.2009.09.001, 19783452.
18. Robertson D. VIGS vectors for gene silencing: many targets, many tools. Annu Rev Plant Biol 2004, 55:495-519. 10.1146/annurev.arplant.55.031903.141803, 15377229.
19. Unver T, Budak H. Virus-induced gene silencing, a post transcriptional gene silencing method. Int J Plant Genomics 2009, 198680.
20. Folimonov AS, Folomonova SY, Bar-Joseph M, Dawson WO. A stable RNA virus-based vector for citrus trees. Virology 2007, 368:205-216. 10.1016/j.virol.2007.06.038, 17651777.
21. Lansac M, Eyquard JP, Salvador B, Garcia JA, Le Gall O, Decroocq V, Hernould M, Schurdi-Levraud V. Application of GFP-tagged Plum pox virus to study Prunus-PPV interactions at the whole plant and cellular levels. J Virol Methods 2005, 129:125-133. 10.1016/j.jviromet.2005.05.016, 15993953.
22. Ion-Nagy L, Lansac M, Eyquard JP, Salvador B, Garcia JA, Le Gall O, Hernould M, Schurdi-Levraud V, Decroocq V. PPV long-distance movement is occasionally permitted in resistant apricot hosts. Virus Res 2006, 120:70-78. 10.1016/j.virusres.2006.01.019, 16504333.
23. Muruganantham M, Moskovitz Y, Haviv S, Horesh T, Fenigstein A, du Preez J, Stephan D, Burger JT, Mawassi M. Grapevine virus A-mediated gene silencing in Nicotiana benthamiana and Vitis vinifera. J Virol Methods 2009, 155:167-174. 10.1016/j.jviromet.2008.10.010, 19010356.
24. Yanase H, Yamaguchi A, Mink GI, Sawamura K. Back transmission of apple chlorotic leafspot virus (type strain) to apple and production of apple topworking disease symptoms in Maruba Kaido (Malus prunifolia Borkh. var. ringo Asami). Ann Phytopathol Soc Jpn 1979, 46:369-374.
25. Le Gall O, Sanfacon H, Ikegami M, Iwanami T, Jones T, Karasev A, Lehto K, Wellink J, Wetzel T, Yoshikawa N. Cheravirus and Sadwavirus: two unassigned genera of plant positive-sense single-stranded RNA viruses formely considered atypical members of the genus Nepovirus (family Comoviridae). Arch Virol 2007, 152:1767-1774. 10.1007/s00705-007-1015-0, 17585366.
26. Li C, Yoshikawa N, Takahashi T, Ito T, Yoshida K, Koganezawa H. Nucleotide sequence and genome organization of Apple latent spherical virus: a new virus classified into the family Comoviridae. J Gen Virol 2000, 81:541-547.
27. Li C, Sasaki N, Isogai M, Yoshikawa N. Stable expression of foreign proteins in herbaceous and apple plants using Apple latent spherical virus RNA2 vectors. Arch Virol 2004, 149:1541-1558.
28. Takahashi T, Sugawara T, Yamatsuta T, Isogai M, Natsuaki T, Yoshikawa N. Analysis of the spatial distribution of identical and two distinct virus populations differently labeled with cyan and yellow fluorescent proteins in coinfected plants. Phytopathology 2007, 97:1200-1206. 10.1094/PHYTO-97-10-1200, 18943677.
29. Yoshikawa N, Okada K, Asanuma K, Watanabe K, Igarashi A, Li C, Isogai M. A movement protein and three capsid proteins are all necessary for the cell-to-cell movement of apple latent spherical cheravirus. Arch Virol 2006, 151:837-848. 10.1007/s00705-005-0689-4, 16362640.
30. Yaegashi H, Yamatsuta T, Takahashi T, Li C, Isogai M, Kobori T, Ohki S, Yoshikawa N. Characterization of virus-induced gene silencing in tobacco plants infected with apple latent spherical virus. Arch Virol 2007, 152:1839-1849. 10.1007/s00705-007-1011-4, 17598069.
31. Yamagishi N, Yoshikawa N. Virus-induced gene silencing in soybean seeds and the emergence stage of soybean plants with Apple latent spherical virus vectors. Plant Mol Biol 71:15-24.
32. Liljegren SJ, Gustafson-Brown C, Pinyopich A, Ditta GS, Yanofsky MF. Interactions among APELALA1, LEAFY, and TERMINAL FLOWER1 specify meristem fate. Plant Cell 1999, 11:1007-1018. 144247, 10368173.
33. Ratcliffe OJ, Amaya CA, Vincent S, Rothstein R, Carpenter ES, Coen ES, Bradley DJ. A common mechanism controls the life cycle and architecture of plants. Development 1998, 125:1609-1615.
34. Kotoda N, Iwanami H, Takahashi S, Abe K. Antisense expression of MdTFL1, a TFL1-like gene, reduces the juvenile phase in apple. J Amer Soc Hort Sci 2006, 131:74-81.
35. Suzuki K, Nalanishi H, Bower J, Yoder DW, Osteryoung KW, Miyagishima S. Plastid chaperonin proteins Cpn60α and Cpn60β are required for plastid division in Arabidopsis thaliana. BMC Plant Biol 2009, 9:38. 10.1186/1471-2229-9-38, 2670834, 19344532.
36. Yamagishi N, Sasaki S, Yoshikawa N. Highly efficient inoculation method of apple viruses to apple seedlings. Julius-Kuhn-Archives 2010, 427:226-229., http://pub.jki.bund.de/index.php/JKA/article/view/443/1496
37. Visser T. The relation between growth, juvenile period and fruiting of apple seedlings and its use to improve breeding efficiency. Euphytica 1970, 19:293-302.
38. Fischer C. Shortening of the juvenile period in apple breeding. Developments in Plant Breeding: Progress in Temperate Fruit Breeding 1994, 161-164. London: Kluwer Academic Publishers, Schmidt H, Kellerhals M.
39. Flachowsky H, Hanke M-V, Peil A, Strauss SH, Fladung M. A review on transgenic approaches to accelerate breeding of woody plants. Plant Breed 2009, 128:217-226.
40. Benlloch R, Berbel A, Serrano-Mislata A, Madueno F. Floral initiation and inflorescence architecture. A comparative view. Ann Bot 2007, 100:659-676. 10.1093/aob/mcm146, 2533596, 17679690.
41. Blazquez MA, Ferrandiz C, Madueno F, Parcy F. How floral meristems are built. Plant Mol Biol 2006, 60:855-870. 10.1007/s11103-006-0013-z, 16724257.
42. Flachowsky H, Peil T, Sopanen T, Elo A, Hanke V. Overexpression of BpMADSA4 from silver birch (Betula pendula Roth.) induces early-flowering in apple (Malus × domestica Borkh). Plant Breed 2007, 126:137-147.
43. Hanke M-V, Flachowsky H, Peil A, Hättasch C. No flower no fruit - Genetic potentials to trigger flowering in fruit trees. Genes, Genomes and Genomics 2007, 1:1-20.
44. Tan F-C, Swan SM. Genetics of flower initiation and development in annual and perennial plants. Physiologia Plantarum 2006, 128:8-17.
45. Yamagishi N, Sasaki S, Yamagata K, Komori S, Nagase M, Wada M, Yamamoto T, Yoshikawa N. Promotion of flowering and reduction of a generation time in apple seedlings by ectopical expression of the Arabidopsis thaliana FT gene using the Apple latent spherical virus vector. Plant Mol Biol 2011, 75:193-204. 10.1007/s11103-010-9718-0, 21132560.
46. Nakamura K, Yamagishi N, Isogai M, Komori S, Ito T, Yoshikawa N. Seed and pollen transmission of Apple latent spherical virus in apple. J Gen Plant Pathol 2011, 77:48-53.
47. Allan AC, Crowhurst R, Gleave A, Newcomb R, Schaffer R. Apple functional genomics. Genetics and Genomics of Rosaceae 2009, 121-142. New York: Springer, Folta KM, Gardiner SE.
48. Velasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, Fontana P, Bhatnagar SK, Troggio M, Pruss D, Salvi S, Pindo M, Baldi P, Castelleti S, Cavaiuolo M, Coppola G, Costa F, Cova V, Dal Ri A, Goremykin V, Komjanc M, Longhi S, Magnago P, Malacarne G, Malnoy M, Micheletti D, Moretto M, Perazzolli M, Si-Ammour A, Vezzulli S, et al. The genome of the domesticated apple (Malus × domestica Borkh.). Nat Genet 2010, 42:833-839. 10.1038/ng.654, 20802477.
49. Gasic K, Hernandez A, Korban SS. RNA extraction from different apple tissues rich in polyphenols and polysaccharides for cDNA library construction. Plant Mol Biol Rep 2004, 22:437a-437g.
50. Burton RA, Gibeaut DM, Bacic A, Findlay K, Roberts K, Hamilton A, Baulcombe DC, Fincher GB. Virus-induced silencing of a plant cellulose synthase gene. Plant Cell 2000, 12:691-705. 139921, 10810144.
51. Kotoda N, Wada M. MdTFL1, a TFL1-like gene of apple, retards the transition from the vegetative to reproductive phase in transgenic Arabidopsis. Plant Sci 2005, 168:95-104.