Scalable brain network construction on white matter fibers

Progress in Biomedical Optics and Imaging - Proceedings of SPIE

Volumn 7962, Issue , 2011, Pages

  Chung, Moo K ^a,b,d   Adluru, Nagesh ^b   Dalton, Kim M ^b   Alexander, Andrew L ^a,b   Davidson, Richard J ^a,b,c  

^a UNIVERSITY OF WISCONSIN SCHOOL OF MEDICINE AND PUBLIC HEALTH   (United States)

^b UNIVERSITY OF WISCONSIN MADISON   (United States)

^c UNIVERSITY OF WISCONSIN MADISON   (United States)

^d Seoul National University   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

3D GRAPHS; BRAIN NETWORKS; HUMAN BRAIN; ITERATIVE FRAMEWORK; NETWORK GRAPH; STRUCTURAL CONNECTIVITY; STRUCTURAL NETWORKS; TRACTOGRAPHY; WHITE MATTER FIBERS; WHITE MATTER TRACTS; WHITE-MATTER FIBER TRACTS;

IMAGE PROCESSING; IMAGING SYSTEMS; SPINNING (FIBERS);

MEDICAL IMAGING;

EID: 79958010193     PISSN: 16057422     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1117/12.874245     Document Type: Conference Paper

References (19)

1. D.C. Alexander and G.J. Barker. Optimal imaging parameters for fibre-orientation estimation in diffusion MRI. NeuroImage, 27:357-367, 2005. (Pubitemid 41074837)
2. P.A. Cook, Y. Bai, S. Nedjati-Gilani, K.K. Seunarine, M.G. Hall, G.J. Parker, and D.C. Alexander. Camino: Open-source diffusion-MRI reconstruction and processing. In 14th Scientific Meeting of the International Society for Magnetic Resonance in Medicine, 2006.
3. K.M. Dalton, B.M. Nacewicz, T. Johnstone, H.S. Schaefer, M.A. Gernsbacher, H.H. Goldsmith, A.L. Alexander, and R.J. Davidson. Gaze fixation and the neural circuitry of face processing in autism. Nature Neuroscience, 8:519-526, 2005. (Pubitemid 41007571)
4. H. Edelsbrunner and J. Harer. Persistent homology - a survey. In Surveys on discrete and computational geometry: twenty years later: AMS-IMS-SIAM Joint Summer Research Conference, volume 453, page 257, 2008.
5. H. Edelsbrunner, D. Letscher, and A. Zomorodian. Topological persistence and simplification. Discrete and Computational Geometry, 28:511-533, 2002. (Pubitemid 36161396)
6. A. Fornito, A. Zalesky, and E.T. Bullmore. Network scaling effects in graph analytic studies of human resting-state fMRI data. Frontiers in Systems Neuroscience, 4:1-16, 2010.
7. R. Ghrist. Barcodes: The persistent topology of data. Bulletin of the American Mathematical Society, 45:61-75, 2008.
8. G. Gong, Y. He, L. Concha, C. Lebel, D.W. Gross, A.C. Evans, and C. Beaulieu. Mapping anatomical connectivity patterns of human cerebral cortex using in vivo diffusion tensor imaging tractography. Cerebral Cortex, 19:524-536, 2009.
9. P. Hagmann, M. Kurant, X. Gigandet, P. Thiran, V.J. Wedeen, R. Meuli, and J.P. Thiran. Mapping human wholebrain structural networks with diffusion MRI. PLoS One, 2(7):e597, 2007.
10. D. Horak, S. Maletić, and M. Rajković. Persistent homology of complex networks. Journal of Statistical Mechanics: Theory and Experiment, 2009:P03034, 2009.
11. P. Jezzard and R.S. Balaban. Correction for geometric distortion in echo planar images from b0 field variations. Magn. Reson. Med., 34:65-73, 2007.
12. S. Joshi, B. Davis, M. Jomier, and G. Gerig. Unbiased diffeomorphic atlas construction for computational anatomy. NeuroImage, 23:151-160, 2004.
13. M. Lazar, D.M. Weinstein, J.S. Tsuruda, K.M. Hasan, K. Arfanakis, M.E. Meyerand, B. Badie, H. Rowley, V. Haughton, A. Field, B. Witwer, and A.L. Alexander. White matter tractography using tensor deflection. Human Brain Mapping, 18:306-321, 2003. (Pubitemid 36403018)
14. H. Lee, M.K. Chung, H. Kang, B.-N. Kim, and Lee D.S. Discriminative persistent homology of brain networks. In IEEE International Symposium on Biomedical Imaging (ISBI), 2011.
15. C. Lord, M. Rutter, and A.L. Couteur. Autism diagnostic interviewrevised: a revised version of a diagnostic interview for caregivers of individuals with possible pervasive developmental disorders. J Autism Dev Disord., pages 659-685, 1994.
16. A. Pothen and C.J. Fan. Computing the block triangular form of a sparse matrix. ACM Transactions on Mathematical Software (TOMS), 16:324, 1990.
17. R.P. Woods, S.T. Grafton, C.J. Holmes, S.R. Cherry, and J.C. Mazziotta. Automated image registration: I. General methods and intrasubject, intramodality validation. Journal of Computer Assisted Tomography, 22:139-152, 1998. (Pubitemid 28087337)
18. A. Zalesky, A. Fornito, I.H. Harding, L. Cocchi, M. Y"ucel, C. Pantelis, and E.T. Bullmore. Whole-brain anatomical networks: Does the choice of nodes matter? Neuroimage, 50:970-983, 2010.
19. H. Zhang, B.B. Avants, P.A. Yushkevich, J.H. Woo, S. Wang, L.F. McCluskey, L.B. Elman, E.R. Melhem, and J.C. Gee. High-dimensional spatial normalization of diffusion tensor images improves the detection of white matter differences: An example study using amyotrophic lateral sclerosis. IEEE Transactions on Medical Imaging, 26:1585-1597, 2007. (Pubitemid 350025493)