Validation of histology image registration

Progress in Biomedical Optics and Imaging - Proceedings of SPIE

Volumn 7962, Issue , 2011, Pages

  Shojaii, Rushin ^a,b   Karavardanyan, Tigran ^b   Yaffe, Martin ^a,b   Martel, Anne L ^a,b  

^a UNIVERSITY OF TORONTO   (Canada)

^b SUNNYBROOK RESEARCH INSTITUTE   (Canada)

Author keywords

fiducial marker; Histology volume; histopathology; image correlation; image registration; multimodality contrast agent; validation

Indexed keywords

FIDUCIAL MARKER; HISTOPATHOLOGY; IMAGE CORRELATION; MULTI-MODALITY; VALIDATION;

ALIGNMENT; HISTOLOGY; IMAGE REGISTRATION; IMAGING SYSTEMS; OPTICAL DATA PROCESSING; PIPELINE PROCESSING SYSTEMS;

MEDICAL IMAGING;

EID: 79958000183     PISSN: 16057422     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1117/12.878762     Document Type: Conference Paper

References (18)

1. Bardinet, É., Ourselin, S., Dormont, D., Malandain, G., Tandé, D., Parain K., Ayache, N. and Yelnik, J., "Co-registration of histological, optical and MR data of the human brain," Lecture Notes in Computer Science, vol. 2488, pp. 548, (2002).
2. Shojaii, R., Martel, A.L., "A Novel Edge Point Selection Method for Registration of Histology Images", Optical Tissue Image analysis in Microscopy, Histopathology and Endoscopy (OPTIMHisE) Workshop, MICCAI 2009.
3. Jacobs, M.A., "Registration and warping of magnetic resonance images to histological sections," Medical Physics, vol. 26, pp. 1568, (1999).
4. Zhan, Y., Ou, Y., Feldman, M., Tomaszeweski, J., Davatzikos, C., and Shen , D., "Registering histologic and MR images of prostate for image-based cancer detection," Academic radiology 14(11), pp. 1367, (2007).
5. Dauguet, J., Delzescaux, T., Condé, F., Mangin, J. F., Ayache, N., Philippe, H. P., and Frouin, V., "Three-dimensional reconstruction of stained histological slices and 3D non-linear registration with in-vivo MRI for whole baboon brain," Journal of Neuroscience Methods 164(1), pp. 191, (2007).
6. Lazebnik, R. S., Lancaster, T. L., Breen, M. S., Lewin, J. S., and Wilson, D. L., "Volume registration using needle paths and point landmarks for evaluation of interventional MRI treatments," IEEE transactions on medical imaging 22(5), pp. 653, (2003).
7. Breen, M. S., Lazebnik, R. S., and Wilson, D. L., "Three-dimensional registration of magnetic resonance image data to histological sections with model-based evaluation," Annals of biomedical engineering 33(8), pp. 1100, (2005).
8. Shojaii, R., Martel, A.L., "Multi-Modality fiducial marker for validation of registration of medical images with histology", Proc. SPIE Vol. 7623, 762331 (Mar. 12, 2010).
9. Lei, M., Xue, C.H., Wang Y.M., Li Z.J., Xue Y., Wang J.F.,"Effect of squid ink melanin-Fe on iron deficiency anemia remission," Journal of food science 73(8), H207-11, (2008).
10. Gonzalez, R. C. and Woods, R. E., "Digital Image Processing" ,3rd ed. ed.Upper Saddle River, N.J.: Prentice Hall, (2008),
11. Ridler, T. W. and Calvard, S., "Picture Thresholding using an iterative selection method," IEEE transactions on systems, man, and cybernetics 8(8), pp. 630, (1978).
12. Freeman, H., "On Computer processing of line drawing images," ACM Computing Surveys (CSUR) Volume 6 , Issue 1, pp.57 - 97 (March 1974).
13. Giardina, C. R., Kuhl, F. P., "Accuracy of Curve Approximation by Harmonically Related Vectors with Elliptical Loci," Computer Graphics and Image Processing 6, 277-285 (1977).
14. Kuhl, F. P., Giardina, C. R., "Elliptic Fourier Features of a Closed Contour," Computer Graphics and Image Processing 18, 236-258 ( 1982).
15. Duan , W., Kuester, F. , Gaudiot, J.L., Hammami, O., "Automatic object and image alignment using Fourier Descriptors," Image and Vision Computing 26, 1196-1206 (2008).
16. Besl, P., and McKay, N., "A Method for Registration of 3D Shapes," IEEE Transactions on Pattern Analysis and Machine Intelligence (PAMI), 14(2):239-256, (1992).
17. Bookstein, F.L., "Principal Warps: Thin-plate splines and the decomposition of deformations," IEEE Transactions on Pattern Analysis and Machine Intelligence, 11(6):567-585, (June 1989).
18. Sprengel, R., Rohr, K., Stiehl, H.S., " Thin-Plate Spline Approximation for Image Registration," Engineering in Medicine and Biology Society (EMBS), 3: 1190-1191, (November 1996).