-
1
-
-
0027051034
-
Computer-assisted alignment of standard serial sections without use of artificial landmarks. a practical approach to the utilization of incomplete information in 3-D reconstruction of the hippocampal region
-
Andreasen A., Drewes A., Assentoft J., and Larsen N. Computer-assisted alignment of standard serial sections without use of artificial landmarks. a practical approach to the utilization of incomplete information in 3-D reconstruction of the hippocampal region. J Neurosci Methods 45 (1992) 199-207
-
(1992)
J Neurosci Methods
, vol.45
, pp. 199-207
-
-
Andreasen, A.1
Drewes, A.2
Assentoft, J.3
Larsen, N.4
-
2
-
-
32644434002
-
Postmortem high-resolution 3-dimensional imaging of the primate brain: blockface imaging of perfusion stained tissue
-
Annese J., Sforza D., Dubach M., Bowden D., and Toga A. Postmortem high-resolution 3-dimensional imaging of the primate brain: blockface imaging of perfusion stained tissue. Neuro Image 30 (2006) 61-69
-
(2006)
Neuro Image
, vol.30
, pp. 61-69
-
-
Annese, J.1
Sforza, D.2
Dubach, M.3
Bowden, D.4
Toga, A.5
-
3
-
-
27144539838
-
Polyrigid and polyaffine transformations: a novel geometrical tool to deal with non-rigid deformations-application to the registration of histological slices
-
Arsigny V., Pennec X., and Ayache N. Polyrigid and polyaffine transformations: a novel geometrical tool to deal with non-rigid deformations-application to the registration of histological slices. Med Image Anal 9 (2005) 507-523
-
(2005)
Med Image Anal
, vol.9
, pp. 507-523
-
-
Arsigny, V.1
Pennec, X.2
Ayache, N.3
-
4
-
-
0001988758
-
Spatial transformation of images
-
Frackowiak R., Friston K., Frith C., Dolan R., and Mazziotta J. (Eds), Academic Press, USA
-
Ashburner J., and Friston K. Spatial transformation of images. In: Frackowiak R., Friston K., Frith C., Dolan R., and Mazziotta J. (Eds). Human brain function (1997), Academic Press, USA 43-58
-
(1997)
Human brain function
, pp. 43-58
-
-
Ashburner, J.1
Friston, K.2
-
5
-
-
84974688494
-
Co-registration of histological, optical and MR data of the human brain
-
Dohi T., and Kikinis R. (Eds), Springer, Tokyo
-
Bardinet E., Ourselin S., Dormont D., Malandain G., Tandé D., Parain K., et al. Co-registration of histological, optical and MR data of the human brain. In: Dohi T., and Kikinis R. (Eds). Medical image computing and computer-assisted intervention (MICCAI'02) (2002), Springer, Tokyo 548-555
-
(2002)
Medical image computing and computer-assisted intervention (MICCAI'02)
, pp. 548-555
-
-
Bardinet, E.1
Ourselin, S.2
Dormont, D.3
Malandain, G.4
Tandé, D.5
Parain, K.6
-
6
-
-
0344241066
-
Mapping of histologically identified long fiber tracts in human cerebral hemispheres to the mri volume of a reference brain: position and spatial variability of the optic radiation
-
Bürgel U., Schormann T., Schleicher A., and Zilles K. Mapping of histologically identified long fiber tracts in human cerebral hemispheres to the mri volume of a reference brain: position and spatial variability of the optic radiation. Neuro Image 10 (1999) 489-499
-
(1999)
Neuro Image
, vol.10
, pp. 489-499
-
-
Bürgel, U.1
Schormann, T.2
Schleicher, A.3
Zilles, K.4
-
7
-
-
0000732463
-
A limited memory algorithm for bound constrained optimization
-
Byrd R., Lu P., Nocedal J., and Zhu C. A limited memory algorithm for bound constrained optimization. SIAM J Sci Comp 16 (1995) 1190-1208
-
(1995)
SIAM J Sci Comp
, vol.16
, pp. 1190-1208
-
-
Byrd, R.1
Lu, P.2
Nocedal, J.3
Zhu, C.4
-
8
-
-
0041662266
-
-
Cachier P, Bardinet E, Dormont D, Pennec X, Ayache N. Iconic feature based nonrigid registration: The PASHA algorithm. CVIU-Special Issue on Nonrigid Registration, 2003;89:272-98.
-
-
-
-
9
-
-
33645127544
-
The creation of a brain atlas for image guided neurosurgery using serial histological data
-
Chakravarty M., Bertrand G., Hodge C., Sadikot A., and Collins D. The creation of a brain atlas for image guided neurosurgery using serial histological data. Neuroimage 30 (2006) 359-376
-
(2006)
Neuroimage
, vol.30
, pp. 359-376
-
-
Chakravarty, M.1
Bertrand, G.2
Hodge, C.3
Sadikot, A.4
Collins, D.5
-
11
-
-
84947426247
-
Consistent linear-elastic transformations for image matching
-
Springer-Verlag p. 224-37
-
Christensen G. Consistent linear-elastic transformations for image matching. Information processing in medical imaging vol. 1613 (1999), Springer-Verlag p. 224-37
-
(1999)
Information processing in medical imaging
, vol.1613
-
-
Christensen, G.1
-
12
-
-
27744441182
-
Robust non-rigid registration to capture brain shift from intra-operative MRI
-
Clatz O., Delingette H., Talos I.F., Golby A.J., Kikinis R., Jolesz F.A., et al. Robust non-rigid registration to capture brain shift from intra-operative MRI. IEEE Trans Med Imaging 24 (2005) 1417-1427
-
(2005)
IEEE Trans Med Imaging
, vol.24
, pp. 1417-1427
-
-
Clatz, O.1
Delingette, H.2
Talos, I.F.3
Golby, A.J.4
Kikinis, R.5
Jolesz, F.A.6
-
14
-
-
17644388079
-
BrainVISA: software platform for visualization and analysis of multi-modality brain data
-
Brighton, United Kingdom
-
Cointepas Y., Mangin J.F., Garnero L., Poline J.B., and Benali H. BrainVISA: software platform for visualization and analysis of multi-modality brain data. Proceedings of 7th HBM. Brighton, United Kingdom (2001) S98
-
(2001)
Proceedings of 7th HBM
-
-
Cointepas, Y.1
Mangin, J.F.2
Garnero, L.3
Poline, J.B.4
Benali, H.5
-
16
-
-
34250675454
-
-
The Society of Nuclear Medicine (SNM), Toronto
-
Dauguet J., Dubois A., Hérard A.S., Besret L., Bonvento G., Syrota A., et al. An automated and robust protocol to reconstruct 3D volume from histological sections: application to an activation study in rat brain (2005), The Society of Nuclear Medicine (SNM), Toronto
-
(2005)
An automated and robust protocol to reconstruct 3D volume from histological sections: application to an activation study in rat brain
-
-
Dauguet, J.1
Dubois, A.2
Hérard, A.S.3
Besret, L.4
Bonvento, G.5
Syrota, A.6
-
17
-
-
20344382263
-
Robust inter-slice intensity normalization using histogram scale-space analysis
-
Barillot C., Haynor D.R., and Hellier P. (Eds), Springer Verlag, Saint-Malot, France
-
Dauguet J., Mangin J.F., Delzescaux T., and Frouin V. Robust inter-slice intensity normalization using histogram scale-space analysis. In: Barillot C., Haynor D.R., and Hellier P. (Eds). Medical image computing and computer-assisted intervention (MICCAI 2004) vol. 3216 (2004), Springer Verlag, Saint-Malot, France 242-249
-
(2004)
Medical image computing and computer-assisted intervention (MICCAI 2004)
, vol.3216
, pp. 242-249
-
-
Dauguet, J.1
Mangin, J.F.2
Delzescaux, T.3
Frouin, V.4
-
18
-
-
0031128523
-
Spatial transformation and registration of brain images using elastically deformable models
-
Davatzikos C. Spatial transformation and registration of brain images using elastically deformable models. Comp Vis Image Understanding: CVIU 66 (1997) 207-222
-
(1997)
Comp Vis Image Understanding: CVIU
, vol.66
, pp. 207-222
-
-
Davatzikos, C.1
-
19
-
-
11244264373
-
Using 3D non rigid FFD-based method to register post-mortem 3D histological data and in vivo MRI of a baboon brain
-
Ellis R.E., and Peters T.M. (Eds), Springer Verlag, Montreal, Canada
-
Delzescaux T., Dauguet J., Condé F., Maroy R., and Frouin V. Using 3D non rigid FFD-based method to register post-mortem 3D histological data and in vivo MRI of a baboon brain. In: Ellis R.E., and Peters T.M. (Eds). Medical image computing and computer-assisted intervention (MICCAI 2003) vol. 2879 (2003), Springer Verlag, Montreal, Canada 965-966
-
(2003)
Medical image computing and computer-assisted intervention (MICCAI 2003)
, vol.2879
, pp. 965-966
-
-
Delzescaux, T.1
Dauguet, J.2
Condé, F.3
Maroy, R.4
Frouin, V.5
-
20
-
-
34250622634
-
A performance study for whole-body helicoidal CT/PET-FDG a posteriori registration using rigid and non-rigid FFD-based methods
-
Nouvelle-Orléans
-
Delzescaux T., Foehrenbach H., and Frouin V. A performance study for whole-body helicoidal CT/PET-FDG a posteriori registration using rigid and non-rigid FFD-based methods. Proceedings of society of nuclear medicine (SNM). Nouvelle-Orléans (2003)
-
(2003)
Proceedings of society of nuclear medicine (SNM)
-
-
Delzescaux, T.1
Foehrenbach, H.2
Frouin, V.3
-
22
-
-
9644272502
-
Functional recovery in a primate model of Parkinson's disease following motor cortex stimulation
-
Drouot X., Oshino S., Besret L., Jarraya B., Kishima H., Rémy P., et al. Functional recovery in a primate model of Parkinson's disease following motor cortex stimulation. Neuron 44 (2004) 769-778
-
(2004)
Neuron
, vol.44
, pp. 769-778
-
-
Drouot, X.1
Oshino, S.2
Besret, L.3
Jarraya, B.4
Kishima, H.5
Rémy, P.6
-
23
-
-
0029197929
-
Spatial registration and normalization of images
-
Friston K., Ashburner J., Frith C., Poline J., Heather J.D., and Frackowiak R. Spatial registration and normalization of images. Hum Brain Map 2 (1995) 165-189
-
(1995)
Hum Brain Map
, vol.2
, pp. 165-189
-
-
Friston, K.1
Ashburner, J.2
Frith, C.3
Poline, J.4
Heather, J.D.5
Frackowiak, R.6
-
24
-
-
0037473243
-
Differential tissue shrinkage and compression in the z-axis: implications for optical disector counting in vibratome-, plastic- and cryosections
-
Gardella D., Hatton W., Rind H., Rosen G., and von Bartheld C. Differential tissue shrinkage and compression in the z-axis: implications for optical disector counting in vibratome-, plastic- and cryosections. J Neurosci Methods 124 (2003) 45-49
-
(2003)
J Neurosci Methods
, vol.124
, pp. 45-49
-
-
Gardella, D.1
Hatton, W.2
Rind, H.3
Rosen, G.4
von Bartheld, C.5
-
25
-
-
0029079148
-
Three-dimensional reconstruction of activated columns from 2-[14c]deoxy-image-glucose data
-
Goldszal A., Tretiak O., Hand P., Bhasin S., and McEachron D. Three-dimensional reconstruction of activated columns from 2-[14c]deoxy-image-glucose data. Neuroimage 2 (1995) 9-20
-
(1995)
Neuroimage
, vol.2
, pp. 9-20
-
-
Goldszal, A.1
Tretiak, O.2
Hand, P.3
Bhasin, S.4
McEachron, D.5
-
26
-
-
0023792253
-
Objective image alignment for three-dimensional reconstruction of digital autoradiograms
-
Hibbard L., and Hawkins R. Objective image alignment for three-dimensional reconstruction of digital autoradiograms. J Neurosci Methods 26 (1988) 55-74
-
(1988)
J Neurosci Methods
, vol.26
, pp. 55-74
-
-
Hibbard, L.1
Hawkins, R.2
-
27
-
-
0030810112
-
Mutual information for automated unwarping of rat brain autoradiographs
-
Kim B., Boes J., Frey K., and Meyer C. Mutual information for automated unwarping of rat brain autoradiographs. Neuro Image 5 (1997) 31-40
-
(1997)
Neuro Image
, vol.5
, pp. 31-40
-
-
Kim, B.1
Boes, J.2
Frey, K.3
Meyer, C.4
-
28
-
-
0031106962
-
Multimodality image registration by maximization of mutual information
-
Maes F., Collignon A., Vandermeulen D., Marchal G., and Suetens P. Multimodality image registration by maximization of mutual information. IEEE Trans Med Imaging 16 (1997) 187-198
-
(1997)
IEEE Trans Med Imaging
, vol.16
, pp. 187-198
-
-
Maes, F.1
Collignon, A.2
Vandermeulen, D.3
Marchal, G.4
Suetens, P.5
-
29
-
-
0032008619
-
A survey of medical image registration
-
Maintz J., and Viergever M. A survey of medical image registration. Med Image Anal 2 (1998) 1-36
-
(1998)
Med Image Anal
, vol.2
, pp. 1-36
-
-
Maintz, J.1
Viergever, M.2
-
30
-
-
4344611563
-
Fusion of autoradiographs with an MR volume using 2-D and 3-D linear transformations
-
Malandain G., Bardinet E., Nelissen K., and Vanduffel W. Fusion of autoradiographs with an MR volume using 2-D and 3-D linear transformations. Neuro Image 23 (2004) 111-127
-
(2004)
Neuro Image
, vol.23
, pp. 111-127
-
-
Malandain, G.1
Bardinet, E.2
Nelissen, K.3
Vanduffel, W.4
-
31
-
-
84947714422
-
Robust brain segmentation using histogram scale-space analysis and mathematical morphology
-
Springer Verlag, Boston
-
Mangin J.F., Coulon O., and Frouin V. Robust brain segmentation using histogram scale-space analysis and mathematical morphology. Proceedings of the 1st MICCAI, 1496 (1998), Springer Verlag, Boston 1230-1241
-
(1998)
Proceedings of the 1st MICCAI, 1496
, pp. 1230-1241
-
-
Mangin, J.F.1
Coulon, O.2
Frouin, V.3
-
32
-
-
5844391461
-
From 3D magnetic resonance images to structural representations of the cortex topography using topology preserving deformations
-
Mangin J.F., Frouin V., Bloch I., Régis J., and López-Krahe J. From 3D magnetic resonance images to structural representations of the cortex topography using topology preserving deformations. J Math Imaging Vis 5 (1995) 297-318
-
(1995)
J Math Imaging Vis
, vol.5
, pp. 297-318
-
-
Mangin, J.F.1
Frouin, V.2
Bloch, I.3
Régis, J.4
López-Krahe, J.5
-
33
-
-
34250645964
-
-
Mattes D. Automatic multimodality image registration with deformations. Technical report, Thesis for the degree of MS in Electrical Eng. Ph.D. diss., Seattle: University of Washington Medical Center; 2000.
-
-
-
-
34
-
-
0037255821
-
PET-CT image registration in the chest using free-form deformations
-
Mattes D., Haynor D., Vesselle H., Lewellen T., and Eubank W. PET-CT image registration in the chest using free-form deformations. IEEE Trans Med Imaging 22 (2003) 120-128
-
(2003)
IEEE Trans Med Imaging
, vol.22
, pp. 120-128
-
-
Mattes, D.1
Haynor, D.2
Vesselle, H.3
Lewellen, T.4
Eubank, W.5
-
35
-
-
0031074962
-
Mapping histology to metabolism: coregistration of stained whole-brain sections to premortem PET in aAlzheimer's disease
-
Mega M., Chen S., Thompson P., Woods R., Karaca T., Tiwari A., et al. Mapping histology to metabolism: coregistration of stained whole-brain sections to premortem PET in aAlzheimer's disease. Neurolmage 5 (1997) 147-153
-
(1997)
Neurolmage
, vol.5
, pp. 147-153
-
-
Mega, M.1
Chen, S.2
Thompson, P.3
Woods, R.4
Karaca, T.5
Tiwari, A.6
-
36
-
-
0035152169
-
Reconstructing a 3D structure from serial histological sections
-
Ourselin S., Roche A., Subsol G., Pennec X., and Ayache N. Reconstructing a 3D structure from serial histological sections. Image Vis Comp 19 (2001) 25-31
-
(2001)
Image Vis Comp
, vol.19
, pp. 25-31
-
-
Ourselin, S.1
Roche, A.2
Subsol, G.3
Pennec, X.4
Ayache, N.5
-
37
-
-
33645845387
-
Piecewise affine registration of biological images for volume reconstruction
-
Pitiot A., Bardinet E., Thompson P., and Malandain G. Piecewise affine registration of biological images for volume reconstruction. Med Image Anal 10 (2006) 465-483
-
(2006)
Med Image Anal
, vol.10
, pp. 465-483
-
-
Pitiot, A.1
Bardinet, E.2
Thompson, P.3
Malandain, G.4
-
38
-
-
0036462556
-
Computation of the mid-sagittal plane in 3d brain images
-
Prima S., Ourselin S., and Ayache N. Computation of the mid-sagittal plane in 3d brain images. IEEE Tran Med Imaging 21 (2002) 122-138
-
(2002)
IEEE Tran Med Imaging
, vol.21
, pp. 122-138
-
-
Prima, S.1
Ourselin, S.2
Ayache, N.3
-
39
-
-
0035164449
-
Variability and asymmetry in the human precentral motor system: a cytoarchitectonic and myeloarchitectonic brain mapping study
-
Rademacher J., Bürgel U., Geyer S., Schormann T., Schleicher A., Freund H.J., et al. Variability and asymmetry in the human precentral motor system: a cytoarchitectonic and myeloarchitectonic brain mapping study. Brain 124 (2001) 2232-2258
-
(2001)
Brain
, vol.124
, pp. 2232-2258
-
-
Rademacher, J.1
Bürgel, U.2
Geyer, S.3
Schormann, T.4
Schleicher, A.5
Freund, H.J.6
-
40
-
-
0031215936
-
A robust point-matching algorithm for autoradiograph alignment
-
Rangarajan A., Chui H., Mjolsness E., Pappu S., Davachi L., Goldman-Rakic P., et al. A robust point-matching algorithm for autoradiograph alignment. Med Image Anal 1 (1997) 379-398
-
(1997)
Med Image Anal
, vol.1
, pp. 379-398
-
-
Rangarajan, A.1
Chui, H.2
Mjolsness, E.3
Pappu, S.4
Davachi, L.5
Goldman-Rakic, P.6
-
41
-
-
0033553331
-
Differential expansion of neural projection systems in primate brain evolution
-
Rilling J., and Insel T. Differential expansion of neural projection systems in primate brain evolution. NeuroReport 10 (1999) 1453-1459
-
(1999)
NeuroReport
, vol.10
, pp. 1453-1459
-
-
Rilling, J.1
Insel, T.2
-
42
-
-
34250672181
-
A freely available anatomist/brainvisa package for structural morphometry of the cortical sulci
-
Rivière D., Regis J., Cointepas Y., Papadopoulos-Orfanos D., Cachia A., and Mangin J.F. A freely available anatomist/brainvisa package for structural morphometry of the cortical sulci. Hum Brain Map (2003) 934
-
(2003)
Hum Brain Map
, pp. 934
-
-
Rivière, D.1
Regis, J.2
Cointepas, Y.3
Papadopoulos-Orfanos, D.4
Cachia, A.5
Mangin, J.F.6
-
44
-
-
0033169211
-
Non-rigid registration using free-form deformations: application to breast MR images
-
Rueckert D., Sonoda L.I., Hayes C., Hill D.L., Leach M.O., and Hawkes D.J. Non-rigid registration using free-form deformations: application to breast MR images. IEEE Trans Med Imaging 18 (1999) 712-721
-
(1999)
IEEE Trans Med Imaging
, vol.18
, pp. 712-721
-
-
Rueckert, D.1
Sonoda, L.I.2
Hayes, C.3
Hill, D.L.4
Leach, M.O.5
Hawkes, D.J.6
-
45
-
-
34250621137
-
Human central sulcus asymmetry and handedness: three-dimensional anatomical and functional imaging studies
-
Sastre-Janer F.A., Thivard L., Belin P., Masure M.C., Lehericy S., Frouin V., et al. Human central sulcus asymmetry and handedness: three-dimensional anatomical and functional imaging studies. J Cogn Neurosci (1998) 91
-
(1998)
J Cogn Neurosci
, pp. 91
-
-
Sastre-Janer, F.A.1
Thivard, L.2
Belin, P.3
Masure, M.C.4
Lehericy, S.5
Frouin, V.6
-
46
-
-
0029269787
-
Statistics of deformations in histology and application to improved alignment with MRI
-
Schormann T., Dabringhaus A., and Zilles K. Statistics of deformations in histology and application to improved alignment with MRI. IEEE Trans Med Imaging 14 (1995) 25-35
-
(1995)
IEEE Trans Med Imaging
, vol.14
, pp. 25-35
-
-
Schormann, T.1
Dabringhaus, A.2
Zilles, K.3
-
47
-
-
0031658766
-
Three-dimensional linear and nonlinear transformations: an integration of light microscopical and mri datas
-
Schormann T., and Zilles K. Three-dimensional linear and nonlinear transformations: an integration of light microscopical and mri datas. Hum Brain Map 6 (1998) 339-347
-
(1998)
Hum Brain Map
, vol.6
, pp. 339-347
-
-
Schormann, T.1
Zilles, K.2
-
48
-
-
0030743676
-
-
Streicher J, Weninger W, Müller G. External marker-based automatic con-gruencing: a new method of 3D reconstruction from serial sections. The Anatomical Record; 1997.
-
-
-
-
49
-
-
0032153006
-
Image matching as a diffusion process: an analogy with maxwell's demons
-
Thirion J.P. Image matching as a diffusion process: an analogy with maxwell's demons. Med Image Anal 2 (1998) 243-260
-
(1998)
Med Image Anal
, vol.2
, pp. 243-260
-
-
Thirion, J.P.1
-
50
-
-
0030215025
-
A surface-based technique for warping three-dimensional images of the brain
-
Thompson P., and Toga A. A surface-based technique for warping three-dimensional images of the brain. IEEE Trans Med Imaging 4 (1996) 1-16
-
(1996)
IEEE Trans Med Imaging
, vol.4
, pp. 1-16
-
-
Thompson, P.1
Toga, A.2
-
51
-
-
0027996081
-
High-resolution anatomy from in situ human brain
-
Toga A., Ambach K., and Schluender S. High-resolution anatomy from in situ human brain. Neuro Image 1 (1994) 334-344
-
(1994)
Neuro Image
, vol.1
, pp. 334-344
-
-
Toga, A.1
Ambach, K.2
Schluender, S.3
-
53
-
-
0031221119
-
Alignment by maximization of mutual information
-
Viola P., and Wells W.M. Alignment by maximization of mutual information. Int J Comp Vis 24 (1997) 137-154
-
(1997)
Int J Comp Vis
, vol.24
, pp. 137-154
-
-
Viola, P.1
Wells, W.M.2
-
54
-
-
0027882130
-
Registration and three-dimensional reconstruction of autoradiographic images by the disparity analysis method
-
Zhao W., Young T., and Ginsberg M. Registration and three-dimensional reconstruction of autoradiographic images by the disparity analysis method. IEEE Trans Med Imaging 12 (1993) 782-791
-
(1993)
IEEE Trans Med Imaging
, vol.12
, pp. 782-791
-
-
Zhao, W.1
Young, T.2
Ginsberg, M.3
|