메뉴 건너뛰기




Volumn 164, Issue 1, 2007, Pages 191-204

Three-dimensional reconstruction of stained histological slices and 3D non-linear registration with in-vivo MRI for whole baboon brain

Author keywords

3D reconstruction; Hemi rigid; Histology; In vivo post mortem registration; PMI; primate

Indexed keywords

ANIMAL TISSUE; ARTICLE; BABOON; BRAIN SLICE; CADAVER; CONTROLLED STUDY; HEMISPHERE; IMAGE ANALYSIS; IMAGE QUALITY; IMAGE RECONSTRUCTION; IN VIVO STUDY; MEDICAL ASSESSMENT; NONHUMAN; NONLINEAR SYSTEM; NUCLEAR MAGNETIC RESONANCE IMAGING; PAPIO PAPIO; PRIORITY JOURNAL; THREE DIMENSIONAL IMAGING; TISSUE FIXATION; TISSUE SECTION;

EID: 34250666634     PISSN: 01650270     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jneumeth.2007.04.017     Document Type: Article
Times cited : (129)

References (54)
  • 1
    • 0027051034 scopus 로고
    • Computer-assisted alignment of standard serial sections without use of artificial landmarks. a practical approach to the utilization of incomplete information in 3-D reconstruction of the hippocampal region
    • Andreasen A., Drewes A., Assentoft J., and Larsen N. Computer-assisted alignment of standard serial sections without use of artificial landmarks. a practical approach to the utilization of incomplete information in 3-D reconstruction of the hippocampal region. J Neurosci Methods 45 (1992) 199-207
    • (1992) J Neurosci Methods , vol.45 , pp. 199-207
    • Andreasen, A.1    Drewes, A.2    Assentoft, J.3    Larsen, N.4
  • 2
    • 32644434002 scopus 로고    scopus 로고
    • Postmortem high-resolution 3-dimensional imaging of the primate brain: blockface imaging of perfusion stained tissue
    • Annese J., Sforza D., Dubach M., Bowden D., and Toga A. Postmortem high-resolution 3-dimensional imaging of the primate brain: blockface imaging of perfusion stained tissue. Neuro Image 30 (2006) 61-69
    • (2006) Neuro Image , vol.30 , pp. 61-69
    • Annese, J.1    Sforza, D.2    Dubach, M.3    Bowden, D.4    Toga, A.5
  • 3
    • 27144539838 scopus 로고    scopus 로고
    • Polyrigid and polyaffine transformations: a novel geometrical tool to deal with non-rigid deformations-application to the registration of histological slices
    • Arsigny V., Pennec X., and Ayache N. Polyrigid and polyaffine transformations: a novel geometrical tool to deal with non-rigid deformations-application to the registration of histological slices. Med Image Anal 9 (2005) 507-523
    • (2005) Med Image Anal , vol.9 , pp. 507-523
    • Arsigny, V.1    Pennec, X.2    Ayache, N.3
  • 4
    • 0001988758 scopus 로고    scopus 로고
    • Spatial transformation of images
    • Frackowiak R., Friston K., Frith C., Dolan R., and Mazziotta J. (Eds), Academic Press, USA
    • Ashburner J., and Friston K. Spatial transformation of images. In: Frackowiak R., Friston K., Frith C., Dolan R., and Mazziotta J. (Eds). Human brain function (1997), Academic Press, USA 43-58
    • (1997) Human brain function , pp. 43-58
    • Ashburner, J.1    Friston, K.2
  • 6
    • 0344241066 scopus 로고    scopus 로고
    • Mapping of histologically identified long fiber tracts in human cerebral hemispheres to the mri volume of a reference brain: position and spatial variability of the optic radiation
    • Bürgel U., Schormann T., Schleicher A., and Zilles K. Mapping of histologically identified long fiber tracts in human cerebral hemispheres to the mri volume of a reference brain: position and spatial variability of the optic radiation. Neuro Image 10 (1999) 489-499
    • (1999) Neuro Image , vol.10 , pp. 489-499
    • Bürgel, U.1    Schormann, T.2    Schleicher, A.3    Zilles, K.4
  • 7
    • 0000732463 scopus 로고
    • A limited memory algorithm for bound constrained optimization
    • Byrd R., Lu P., Nocedal J., and Zhu C. A limited memory algorithm for bound constrained optimization. SIAM J Sci Comp 16 (1995) 1190-1208
    • (1995) SIAM J Sci Comp , vol.16 , pp. 1190-1208
    • Byrd, R.1    Lu, P.2    Nocedal, J.3    Zhu, C.4
  • 8
    • 0041662266 scopus 로고    scopus 로고
    • Cachier P, Bardinet E, Dormont D, Pennec X, Ayache N. Iconic feature based nonrigid registration: The PASHA algorithm. CVIU-Special Issue on Nonrigid Registration, 2003;89:272-98.
  • 9
    • 33645127544 scopus 로고    scopus 로고
    • The creation of a brain atlas for image guided neurosurgery using serial histological data
    • Chakravarty M., Bertrand G., Hodge C., Sadikot A., and Collins D. The creation of a brain atlas for image guided neurosurgery using serial histological data. Neuroimage 30 (2006) 359-376
    • (2006) Neuroimage , vol.30 , pp. 359-376
    • Chakravarty, M.1    Bertrand, G.2    Hodge, C.3    Sadikot, A.4    Collins, D.5
  • 11
    • 84947426247 scopus 로고    scopus 로고
    • Consistent linear-elastic transformations for image matching
    • Springer-Verlag p. 224-37
    • Christensen G. Consistent linear-elastic transformations for image matching. Information processing in medical imaging vol. 1613 (1999), Springer-Verlag p. 224-37
    • (1999) Information processing in medical imaging , vol.1613
    • Christensen, G.1
  • 13
    • 0032079323 scopus 로고    scopus 로고
    • Automatic matching of homologous histological sections
    • Cohen F., Yang Z., Huang Z., and Nissanov J. Automatic matching of homologous histological sections. IEEE Trans Biomed Eng 45 (1998) 642-649
    • (1998) IEEE Trans Biomed Eng , vol.45 , pp. 642-649
    • Cohen, F.1    Yang, Z.2    Huang, Z.3    Nissanov, J.4
  • 14
    • 17644388079 scopus 로고    scopus 로고
    • BrainVISA: software platform for visualization and analysis of multi-modality brain data
    • Brighton, United Kingdom
    • Cointepas Y., Mangin J.F., Garnero L., Poline J.B., and Benali H. BrainVISA: software platform for visualization and analysis of multi-modality brain data. Proceedings of 7th HBM. Brighton, United Kingdom (2001) S98
    • (2001) Proceedings of 7th HBM
    • Cointepas, Y.1    Mangin, J.F.2    Garnero, L.3    Poline, J.B.4    Benali, H.5
  • 17
    • 20344382263 scopus 로고    scopus 로고
    • Robust inter-slice intensity normalization using histogram scale-space analysis
    • Barillot C., Haynor D.R., and Hellier P. (Eds), Springer Verlag, Saint-Malot, France
    • Dauguet J., Mangin J.F., Delzescaux T., and Frouin V. Robust inter-slice intensity normalization using histogram scale-space analysis. In: Barillot C., Haynor D.R., and Hellier P. (Eds). Medical image computing and computer-assisted intervention (MICCAI 2004) vol. 3216 (2004), Springer Verlag, Saint-Malot, France 242-249
    • (2004) Medical image computing and computer-assisted intervention (MICCAI 2004) , vol.3216 , pp. 242-249
    • Dauguet, J.1    Mangin, J.F.2    Delzescaux, T.3    Frouin, V.4
  • 18
    • 0031128523 scopus 로고    scopus 로고
    • Spatial transformation and registration of brain images using elastically deformable models
    • Davatzikos C. Spatial transformation and registration of brain images using elastically deformable models. Comp Vis Image Understanding: CVIU 66 (1997) 207-222
    • (1997) Comp Vis Image Understanding: CVIU , vol.66 , pp. 207-222
    • Davatzikos, C.1
  • 19
    • 11244264373 scopus 로고    scopus 로고
    • Using 3D non rigid FFD-based method to register post-mortem 3D histological data and in vivo MRI of a baboon brain
    • Ellis R.E., and Peters T.M. (Eds), Springer Verlag, Montreal, Canada
    • Delzescaux T., Dauguet J., Condé F., Maroy R., and Frouin V. Using 3D non rigid FFD-based method to register post-mortem 3D histological data and in vivo MRI of a baboon brain. In: Ellis R.E., and Peters T.M. (Eds). Medical image computing and computer-assisted intervention (MICCAI 2003) vol. 2879 (2003), Springer Verlag, Montreal, Canada 965-966
    • (2003) Medical image computing and computer-assisted intervention (MICCAI 2003) , vol.2879 , pp. 965-966
    • Delzescaux, T.1    Dauguet, J.2    Condé, F.3    Maroy, R.4    Frouin, V.5
  • 20
    • 34250622634 scopus 로고    scopus 로고
    • A performance study for whole-body helicoidal CT/PET-FDG a posteriori registration using rigid and non-rigid FFD-based methods
    • Nouvelle-Orléans
    • Delzescaux T., Foehrenbach H., and Frouin V. A performance study for whole-body helicoidal CT/PET-FDG a posteriori registration using rigid and non-rigid FFD-based methods. Proceedings of society of nuclear medicine (SNM). Nouvelle-Orléans (2003)
    • (2003) Proceedings of society of nuclear medicine (SNM)
    • Delzescaux, T.1    Foehrenbach, H.2    Frouin, V.3
  • 22
    • 9644272502 scopus 로고    scopus 로고
    • Functional recovery in a primate model of Parkinson's disease following motor cortex stimulation
    • Drouot X., Oshino S., Besret L., Jarraya B., Kishima H., Rémy P., et al. Functional recovery in a primate model of Parkinson's disease following motor cortex stimulation. Neuron 44 (2004) 769-778
    • (2004) Neuron , vol.44 , pp. 769-778
    • Drouot, X.1    Oshino, S.2    Besret, L.3    Jarraya, B.4    Kishima, H.5    Rémy, P.6
  • 24
    • 0037473243 scopus 로고    scopus 로고
    • Differential tissue shrinkage and compression in the z-axis: implications for optical disector counting in vibratome-, plastic- and cryosections
    • Gardella D., Hatton W., Rind H., Rosen G., and von Bartheld C. Differential tissue shrinkage and compression in the z-axis: implications for optical disector counting in vibratome-, plastic- and cryosections. J Neurosci Methods 124 (2003) 45-49
    • (2003) J Neurosci Methods , vol.124 , pp. 45-49
    • Gardella, D.1    Hatton, W.2    Rind, H.3    Rosen, G.4    von Bartheld, C.5
  • 25
    • 0029079148 scopus 로고
    • Three-dimensional reconstruction of activated columns from 2-[14c]deoxy-image-glucose data
    • Goldszal A., Tretiak O., Hand P., Bhasin S., and McEachron D. Three-dimensional reconstruction of activated columns from 2-[14c]deoxy-image-glucose data. Neuroimage 2 (1995) 9-20
    • (1995) Neuroimage , vol.2 , pp. 9-20
    • Goldszal, A.1    Tretiak, O.2    Hand, P.3    Bhasin, S.4    McEachron, D.5
  • 26
    • 0023792253 scopus 로고
    • Objective image alignment for three-dimensional reconstruction of digital autoradiograms
    • Hibbard L., and Hawkins R. Objective image alignment for three-dimensional reconstruction of digital autoradiograms. J Neurosci Methods 26 (1988) 55-74
    • (1988) J Neurosci Methods , vol.26 , pp. 55-74
    • Hibbard, L.1    Hawkins, R.2
  • 27
    • 0030810112 scopus 로고    scopus 로고
    • Mutual information for automated unwarping of rat brain autoradiographs
    • Kim B., Boes J., Frey K., and Meyer C. Mutual information for automated unwarping of rat brain autoradiographs. Neuro Image 5 (1997) 31-40
    • (1997) Neuro Image , vol.5 , pp. 31-40
    • Kim, B.1    Boes, J.2    Frey, K.3    Meyer, C.4
  • 29
    • 0032008619 scopus 로고    scopus 로고
    • A survey of medical image registration
    • Maintz J., and Viergever M. A survey of medical image registration. Med Image Anal 2 (1998) 1-36
    • (1998) Med Image Anal , vol.2 , pp. 1-36
    • Maintz, J.1    Viergever, M.2
  • 30
    • 4344611563 scopus 로고    scopus 로고
    • Fusion of autoradiographs with an MR volume using 2-D and 3-D linear transformations
    • Malandain G., Bardinet E., Nelissen K., and Vanduffel W. Fusion of autoradiographs with an MR volume using 2-D and 3-D linear transformations. Neuro Image 23 (2004) 111-127
    • (2004) Neuro Image , vol.23 , pp. 111-127
    • Malandain, G.1    Bardinet, E.2    Nelissen, K.3    Vanduffel, W.4
  • 31
    • 84947714422 scopus 로고    scopus 로고
    • Robust brain segmentation using histogram scale-space analysis and mathematical morphology
    • Springer Verlag, Boston
    • Mangin J.F., Coulon O., and Frouin V. Robust brain segmentation using histogram scale-space analysis and mathematical morphology. Proceedings of the 1st MICCAI, 1496 (1998), Springer Verlag, Boston 1230-1241
    • (1998) Proceedings of the 1st MICCAI, 1496 , pp. 1230-1241
    • Mangin, J.F.1    Coulon, O.2    Frouin, V.3
  • 32
    • 5844391461 scopus 로고
    • From 3D magnetic resonance images to structural representations of the cortex topography using topology preserving deformations
    • Mangin J.F., Frouin V., Bloch I., Régis J., and López-Krahe J. From 3D magnetic resonance images to structural representations of the cortex topography using topology preserving deformations. J Math Imaging Vis 5 (1995) 297-318
    • (1995) J Math Imaging Vis , vol.5 , pp. 297-318
    • Mangin, J.F.1    Frouin, V.2    Bloch, I.3    Régis, J.4    López-Krahe, J.5
  • 33
    • 34250645964 scopus 로고    scopus 로고
    • Mattes D. Automatic multimodality image registration with deformations. Technical report, Thesis for the degree of MS in Electrical Eng. Ph.D. diss., Seattle: University of Washington Medical Center; 2000.
  • 35
    • 0031074962 scopus 로고    scopus 로고
    • Mapping histology to metabolism: coregistration of stained whole-brain sections to premortem PET in aAlzheimer's disease
    • Mega M., Chen S., Thompson P., Woods R., Karaca T., Tiwari A., et al. Mapping histology to metabolism: coregistration of stained whole-brain sections to premortem PET in aAlzheimer's disease. Neurolmage 5 (1997) 147-153
    • (1997) Neurolmage , vol.5 , pp. 147-153
    • Mega, M.1    Chen, S.2    Thompson, P.3    Woods, R.4    Karaca, T.5    Tiwari, A.6
  • 36
    • 0035152169 scopus 로고    scopus 로고
    • Reconstructing a 3D structure from serial histological sections
    • Ourselin S., Roche A., Subsol G., Pennec X., and Ayache N. Reconstructing a 3D structure from serial histological sections. Image Vis Comp 19 (2001) 25-31
    • (2001) Image Vis Comp , vol.19 , pp. 25-31
    • Ourselin, S.1    Roche, A.2    Subsol, G.3    Pennec, X.4    Ayache, N.5
  • 37
    • 33645845387 scopus 로고    scopus 로고
    • Piecewise affine registration of biological images for volume reconstruction
    • Pitiot A., Bardinet E., Thompson P., and Malandain G. Piecewise affine registration of biological images for volume reconstruction. Med Image Anal 10 (2006) 465-483
    • (2006) Med Image Anal , vol.10 , pp. 465-483
    • Pitiot, A.1    Bardinet, E.2    Thompson, P.3    Malandain, G.4
  • 38
    • 0036462556 scopus 로고    scopus 로고
    • Computation of the mid-sagittal plane in 3d brain images
    • Prima S., Ourselin S., and Ayache N. Computation of the mid-sagittal plane in 3d brain images. IEEE Tran Med Imaging 21 (2002) 122-138
    • (2002) IEEE Tran Med Imaging , vol.21 , pp. 122-138
    • Prima, S.1    Ourselin, S.2    Ayache, N.3
  • 39
    • 0035164449 scopus 로고    scopus 로고
    • Variability and asymmetry in the human precentral motor system: a cytoarchitectonic and myeloarchitectonic brain mapping study
    • Rademacher J., Bürgel U., Geyer S., Schormann T., Schleicher A., Freund H.J., et al. Variability and asymmetry in the human precentral motor system: a cytoarchitectonic and myeloarchitectonic brain mapping study. Brain 124 (2001) 2232-2258
    • (2001) Brain , vol.124 , pp. 2232-2258
    • Rademacher, J.1    Bürgel, U.2    Geyer, S.3    Schormann, T.4    Schleicher, A.5    Freund, H.J.6
  • 41
    • 0033553331 scopus 로고    scopus 로고
    • Differential expansion of neural projection systems in primate brain evolution
    • Rilling J., and Insel T. Differential expansion of neural projection systems in primate brain evolution. NeuroReport 10 (1999) 1453-1459
    • (1999) NeuroReport , vol.10 , pp. 1453-1459
    • Rilling, J.1    Insel, T.2
  • 45
    • 34250621137 scopus 로고    scopus 로고
    • Human central sulcus asymmetry and handedness: three-dimensional anatomical and functional imaging studies
    • Sastre-Janer F.A., Thivard L., Belin P., Masure M.C., Lehericy S., Frouin V., et al. Human central sulcus asymmetry and handedness: three-dimensional anatomical and functional imaging studies. J Cogn Neurosci (1998) 91
    • (1998) J Cogn Neurosci , pp. 91
    • Sastre-Janer, F.A.1    Thivard, L.2    Belin, P.3    Masure, M.C.4    Lehericy, S.5    Frouin, V.6
  • 46
    • 0029269787 scopus 로고
    • Statistics of deformations in histology and application to improved alignment with MRI
    • Schormann T., Dabringhaus A., and Zilles K. Statistics of deformations in histology and application to improved alignment with MRI. IEEE Trans Med Imaging 14 (1995) 25-35
    • (1995) IEEE Trans Med Imaging , vol.14 , pp. 25-35
    • Schormann, T.1    Dabringhaus, A.2    Zilles, K.3
  • 47
    • 0031658766 scopus 로고    scopus 로고
    • Three-dimensional linear and nonlinear transformations: an integration of light microscopical and mri datas
    • Schormann T., and Zilles K. Three-dimensional linear and nonlinear transformations: an integration of light microscopical and mri datas. Hum Brain Map 6 (1998) 339-347
    • (1998) Hum Brain Map , vol.6 , pp. 339-347
    • Schormann, T.1    Zilles, K.2
  • 48
    • 0030743676 scopus 로고    scopus 로고
    • Streicher J, Weninger W, Müller G. External marker-based automatic con-gruencing: a new method of 3D reconstruction from serial sections. The Anatomical Record; 1997.
  • 49
    • 0032153006 scopus 로고    scopus 로고
    • Image matching as a diffusion process: an analogy with maxwell's demons
    • Thirion J.P. Image matching as a diffusion process: an analogy with maxwell's demons. Med Image Anal 2 (1998) 243-260
    • (1998) Med Image Anal , vol.2 , pp. 243-260
    • Thirion, J.P.1
  • 50
    • 0030215025 scopus 로고    scopus 로고
    • A surface-based technique for warping three-dimensional images of the brain
    • Thompson P., and Toga A. A surface-based technique for warping three-dimensional images of the brain. IEEE Trans Med Imaging 4 (1996) 1-16
    • (1996) IEEE Trans Med Imaging , vol.4 , pp. 1-16
    • Thompson, P.1    Toga, A.2
  • 51
    • 0027996081 scopus 로고
    • High-resolution anatomy from in situ human brain
    • Toga A., Ambach K., and Schluender S. High-resolution anatomy from in situ human brain. Neuro Image 1 (1994) 334-344
    • (1994) Neuro Image , vol.1 , pp. 334-344
    • Toga, A.1    Ambach, K.2    Schluender, S.3
  • 52
  • 53
    • 0031221119 scopus 로고    scopus 로고
    • Alignment by maximization of mutual information
    • Viola P., and Wells W.M. Alignment by maximization of mutual information. Int J Comp Vis 24 (1997) 137-154
    • (1997) Int J Comp Vis , vol.24 , pp. 137-154
    • Viola, P.1    Wells, W.M.2
  • 54
    • 0027882130 scopus 로고
    • Registration and three-dimensional reconstruction of autoradiographic images by the disparity analysis method
    • Zhao W., Young T., and Ginsberg M. Registration and three-dimensional reconstruction of autoradiographic images by the disparity analysis method. IEEE Trans Med Imaging 12 (1993) 782-791
    • (1993) IEEE Trans Med Imaging , vol.12 , pp. 782-791
    • Zhao, W.1    Young, T.2    Ginsberg, M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.