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Volumn 34, Issue 2, 2011, Pages 280-285

Phylogenetic analysis, based on EPIYA repeats in the cagA gene of Indian helicobacter pylori, and the implications of sequence variation in tyrosine phosphorylation motifs on determining the clinical outcome

Author keywords

Anatomically modern humans; EPIYA motifs; Haplotypes; Helicobacter pylori; Tyrosine phosphorylation motifs

Indexed keywords

ALANINE; GLUTAMIC ACID; ISOLEUCINE; PROLINE; TYROSINE;

EID: 79957913791     PISSN: 14154757     EISSN: 16784685     Source Type: Journal    
DOI: 10.1590/S1415-47572011005000003     Document Type: Article
Times cited : (7)

References (27)
  • 1
    • 12144291018 scopus 로고    scopus 로고
    • Association between diversity in the Src Homology 2 domain-containing tyrosine phosphatase binding site of Helicobacter pylori CagA protein and gastric atrophy and cancer
    • Azuma T, Yamazaki S, Yamakawa A, Ohtani M, Muramatsu A, Suto H, Ito Y, Dojo M, Yamazaki Y, Kuriyama M, et al. (2004) Association between diversity in the Src Homology 2 domain-containing tyrosine phosphatase binding site of Helicobacter pylori CagA protein and gastric atrophy and cancer. J Infect Dis 189:820-827.
    • (2004) J Infect Dis , vol.189 , pp. 820-827
    • Azuma, T.1    Yamazaki, S.2    Yamakawa, A.3    Ohtani, M.4    Muramatsu, A.5    Suto, H.6    Ito, Y.7    Dojo, M.8    Yamazaki, Y.9    Kuriyama, M.10
  • 2
    • 21344448198 scopus 로고    scopus 로고
    • Helicobacter pylori-host cell interactions mediated by type IV secretion
    • Bourzac KM and Guillemin K (2005) Helicobacter pylori-host cell interactions mediated by type IV secretion. Cell Mi-crobiol 7:911-919.
    • (2005) Cell Mi-crobiol , vol.7 , pp. 911-919
    • Bourzac, K.M.1    Guillemin, K.2
  • 5
    • 18844400863 scopus 로고    scopus 로고
    • Structural and dynamic properties of bacterial type IV secretion systems
    • Christie PJ and Cascales E (2005) Structural and dynamic properties of bacterial type IV secretion systems. Mol Membr Biol 22:51-61.
    • (2005) Mol Membr Biol , vol.22 , pp. 51-61
    • Christie, P.J.1    Cascales, E.2
  • 6
    • 0028308711 scopus 로고
    • Divergence of genetic sequences for the vacuolating cytotoxin among Helicobacter pylori strains
    • Cover TL, Tummuru MK, Cao P, Thompson A and Blaser MJ (1994) Divergence of genetic sequences for the vacuolating cytotoxin among Helicobacter pylori strains. J Biol Chem 269:10566-10573.
    • (1994) J Biol Chem , vol.269 , pp. 10566-10573
    • Cover, T.L.1    Tummuru, M.K.2    Cao, P.3    Thompson, A.4    Blaser, M.J.5
  • 7
    • 13244262969 scopus 로고    scopus 로고
    • Helicobacter infection, chronic inflammation, and the development of malignancy
    • Crowe SE (2005) Helicobacter infection, chronic inflammation, and the development of malignancy. Curr Opin Gastro-enterol 21:32-38.
    • (2005) Curr Opin Gastro-enterol , vol.21 , pp. 32-38
    • Crowe, S.E.1
  • 9
    • 0037195107 scopus 로고    scopus 로고
    • Biological activity of the Heli-cobacter pylori virulence factor CagA is determined by variation in the tyrosine phosphorylation sites
    • Higashi H, Tsutsumi R, Fujita A, Yamazaki S, Asaka M, Azuma T and Hatakeyama M (2002) Biological activity of the Heli-cobacter pylori virulence factor CagA is determined by variation in the tyrosine phosphorylation sites. Proc Natl Acad Sci USA 99:14428-14433.
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 14428-14433
    • Higashi, H.1    Tsutsumi, R.2    Fujita, A.3    Yamazaki, S.4    Asaka, M.5    Azuma, T.6    Hatakeyama, M.7
  • 10
    • 0141814974 scopus 로고    scopus 로고
    • The size of cagA based on repeat sequence has the responsibility of the location of Helicobacter pylori in the gastric mucus and the degree of gastric mucosal inflammation
    • Karita M, Matsumoto S and Kamei T (2003) The size of cagA based on repeat sequence has the responsibility of the location of Helicobacter pylori in the gastric mucus and the degree of gastric mucosal inflammation. Microbiol Immunol 47:619-630.
    • (2003) Microbiol Immunol , vol.47 , pp. 619-630
    • Karita, M.1    Matsumoto, S.2    Kamei, T.3
  • 14
    • 0035678201 scopus 로고    scopus 로고
    • Ethnic population of India as seen from an evolutionary perspective
    • Majumder PP (2001) Ethnic population of India as seen from an evolutionary perspective. J Biosci 26:533-545.
    • (2001) J Biosci , vol.26 , pp. 533-545
    • Majumder, P.P.1
  • 15
    • 4243925633 scopus 로고    scopus 로고
    • One hundred years of discovery and rediscovery of Helicobacter pylori and its association with peptic ulcer disease
    • Mobley HLT, Mendz GL and Hazell SL (eds), American Society of Microbiology, Washington DC
    • Marshall BJ (2001) One hundred years of discovery and rediscovery of Helicobacter pylori and its association with peptic ulcer disease. In: Mobley HLT, Mendz GL and Hazell SL (eds) Helicobacter pylori: Physiology and Genetics. American Society of Microbiology, Washington DC, pp 178-186.
    • (2001) Helicobacter Pylori: Physiology and Genetics , pp. 178-186
    • Marshall, B.J.1
  • 16
    • 25444434143 scopus 로고    scopus 로고
    • Most of the extant mtDNA boundaries in South and Southwest Asia were likely shaped during the initial settlement of Eurasia by anatomically modern humans
    • Metspalu M, Kivisild T, Metspalu E, Parik J, Hudjashov G, Kaldma K, Serk P, Karmin M, Behar DM, Gilbert MTP, et al. (2004) Most of the extant mtDNA boundaries in South and Southwest Asia were likely shaped during the initial settlement of Eurasia by anatomically modern humans. BMC Genetics 5:e26
    • (2004) BMC Genetics , vol.e26 , pp. 5
    • Metspalu, M.1    Kivisild, T.2    Metspalu, E.3    Parik, J.4    Hudjashov, G.5    Kaldma, K.6    Serk, P.7    Karmin, M.8    Behar, D.M.9    Gilbert, M.T.P.10
  • 17
    • 0035676676 scopus 로고    scopus 로고
    • Prehistoric human colonization of India
    • Mishra VN (2001) Prehistoric human colonization of India. J Biosci 26:491-531.
    • (2001) J Biosci , vol.26 , pp. 491-531
    • Mishra, V.N.1
  • 18
    • 0035374653 scopus 로고    scopus 로고
    • Living dangerously: How Helicobacter pylori survives in the human stomach
    • Montecucco C and Rappuoli R (2001) Living dangerously: How Helicobacter pylori survives in the human stomach. Nat Rev Mol Cell Biol 2:457-466.
    • (2001) Nat Rev Mol Cell Biol , vol.2 , pp. 457-466
    • Montecucco, C.1    Rappuoli, R.2
  • 19
    • 0035119506 scopus 로고    scopus 로고
    • Composition and gene expression of the cag pathogenicity island in Helicobacter pylori strains from gastric carcinoma and gastritis patients in Costa Rica
    • Occhialini A, Marais A, Urdaci M, Sierra R, Munoz N, Covacci A and Megraud F (2001) Composition and gene expression of the cag pathogenicity island in Helicobacter pylori strains from gastric carcinoma and gastritis patients in Costa Rica. Infect Immun 6:1902-1908.
    • (2001) Infect Immun , vol.6 , pp. 1902-1908
    • Occhialini, A.1    Marais, A.2    Urdaci, M.3    Sierra, R.4    Munoz, N.5    Covacci, A.6    Megraud, F.7
  • 20
    • 17344379177 scopus 로고    scopus 로고
    • Translocation of Helicobacter pylori CagA into gastric epithelial cells by type IV secretion
    • Odenbreit S, Püls J, Sedlmaier B, Gerland E, Fischer W and Hass R (2000) Translocation of Helicobacter pylori CagA into gastric epithelial cells by type IV secretion. Science 287:1497-1500.
    • (2000) Science , vol.287 , pp. 1497-1500
    • Odenbreit, S.1    Püls, J.2    Sedlmaier, B.3    Gerland, E.4    Fischer, W.5    Hass, R.6
  • 21
    • 0037830529 scopus 로고    scopus 로고
    • Identification of cagA tyrosine phosphorylation DNA motifs in Helicobacter pylori isolates from peptic ulcer patients by novel PCR-restriction fragment length polymorphism and real-time fluorescence PCR assays
    • Owen RJ, Sharp SI, Chisholm SA and Rijpkema S (2003) Identification of cagA tyrosine phosphorylation DNA motifs in Helicobacter pylori isolates from peptic ulcer patients by novel PCR-restriction fragment length polymorphism and real-time fluorescence PCR assays. J Clin Microbiol 41:3112-3118.
    • (2003) J Clin Microbiol , vol.41 , pp. 3112-3118
    • Owen, R.J.1    Sharp, S.I.2    Chisholm, S.A.3    Rijpkema, S.4
  • 22
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou N and Nei M (1987) The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425.
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 23
    • 0036227053 scopus 로고    scopus 로고
    • C-Src/Lyn kinases activate Helicobacter pyloriCagA through tyrosine phosphorylationofthe EPIYA motifs
    • Stein M, Bagnoli F, Halenbeck R, Rappuoli R, Fantl WJ and Covacci A (2002) C-Src/Lyn kinases activate Helicobacter pyloriCagA through tyrosine phosphorylationofthe EPIYA motifs. Mol Microbiol 43:971-980.
    • (2002) Mol Microbiol , vol.43 , pp. 971-980
    • Stein, M.1    Bagnoli, F.2    Halenbeck, R.3    Rappuoli, R.4    Fantl, W.J.5    Covacci, A.6
  • 24
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software v. 4.0. The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Tamura K, Dudley J, Nei M and Kumar S (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software v. 4.0. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol 24:1596-1599.
    • (2007) Mol Biol Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 25
    • 21444454937 scopus 로고    scopus 로고
    • Different population histories of the Mundari-and Mon-Khmer-speaking Austro-Asiatic tribes inferred from the mtDNA 9-bp deletion/insertion polymorphism in Indian populations
    • Thangaraj K, Sridhar V, Kivisild T, Reddy AG, Chaubey G, Singh VK, Kaur S, Agarawal P, Rai A, Gupta J, et al. (2005) Different population histories of the Mundari-and Mon-Khmer-speaking Austro-Asiatic tribes inferred from the mtDNA 9-bp deletion/insertion polymorphism in Indian populations. Hum Genet 116:507-517.
    • (2005) Hum Genet , vol.116 , pp. 507-517
    • Thangaraj, K.1    Sridhar, V.2    Kivisild, T.3    Reddy, A.G.4    Chaubey, G.5    Singh, V.K.6    Kaur, S.7    Agarawal, P.8    Rai, A.9    Gupta, J.10
  • 27
    • 0345373975 scopus 로고    scopus 로고
    • Helicobacter pylori babA2, cagA, and s1 vacA genes work synergistically in causing intestinal metaplasia
    • Zambon CF, Navaglia F, Basso D, Rugge M and Plebani M (2003) Helicobacter pylori babA2, cagA, and s1 vacA genes work synergistically in causing intestinal metaplasia. J Clin Pathol 56:287-291.
    • (2003) J Clin Pathol , vol.56 , pp. 287-291
    • Zambon, C.F.1    Navaglia, F.2    Basso, D.3    Rugge, M.4    Plebani, M.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.