EST-based identification of genes expressed in skeletal muscle of the mandarin fish (Siniperca chuatsi)

Genomics, Proteomics and Bioinformatics

Volumn 9, Issue 1-2, 2011, Pages 30-36

  Ding, Feng ^a   Chu, Wuying ^b   Cui, Peng ^a   Tao, Meng ^b   Zhou, Ruixue ^b   Zhao, Falan ^b   Hu, Songnian ^a   Zhang, Jianshe ^b  

^a Chinese Academy of Sciences and China National Center for Bioinformation   (China)

^b CHANGSHA UNIVERSITY   (China)

Author keywords

CDNA library; EST; Mandarin fish; Muscle

Indexed keywords

COMPLEMENTARY DNA; CONTIG; NUCLEASE DIPHOSPHATE KINASE B; PHOSPHOTRANSFERASE; UNCLASSIFIED DRUG;

AMINO ACID METABOLISM; ANIMAL TISSUE; ARTICLE; CLUSTER ANALYSIS; EXPRESSED SEQUENCE TAG; FAST MUSCLE; FISH; GENE EXPRESSION; GENE EXPRESSION PROFILING; GENE IDENTIFICATION; GENE SEQUENCE; GENOME; MUSCLE DEVELOPMENT; NONHUMAN; NUCLEOTIDE METABOLISM; SEQUENCE HOMOLOGY; SKELETAL MUSCLE;

ANIMALS; EXPRESSED SEQUENCE TAGS; GENE EXPRESSION PROFILING; METABOLOME; MOLECULAR SEQUENCE ANNOTATION; MUSCLE, SKELETAL; NUCLEOSIDE-DIPHOSPHATE KINASE; PERCIFORMES;

SINIPERCA CHUATSI;

EID: 79957898795     PISSN: 16720229     EISSN: 22103244     Source Type: Journal    
DOI: 10.1016/S1672-0229(11)60005-3     Document Type: Article

References (33)

1. Naylor R.L., et al. Effect of aquaculture on world fish supplies. Nature 2000, 405:1017-1024.
2. Njinkoue J.M., et al. Lipids and fatty acids in muscle, liver and skin of three edible fish from the Senegalese coast: Sardinella maderensis, Sardinella aurita and Cephalopholis taeniops. Comp. Biochem. Physiol. B Biochem. Mol. Biol. 2002, 131:395-402.
3. Chong A., et al. Amino acid profile of various body tissues and eggs of discus fish, Symphysodon aequifasciata. J. Appl. Aquaculture 2004, 16:157-168.
4. Tang J.Z., et al. Comparative analysis of the amino acid composition and proteomic patterns of the muscle proteins from two teleosts, Siniperca chuatsi L. and Hypophthalmichthys molitrix L. J. Fish. Chi. 2007, 31:361-368.
5. Zhang J., et al. cDNA cloning and expression analysis of myosin heavy chain gene (MHC) of the mandarin fish Sniperca kneri. Aqua. Res. 2009, 40:412-418.
6. Zhang J., et al. Gene expression profiles of the muscle tissues of the mandarin fish Siniperca chustsi L. with zebrafish cDNA microarray. Acta Hydrobiologica Sin. 2009, 33:46-53.
7. Govoroun M., et al. Generation of a large scale repertoire of Expressed Sequence Tags (ESTs) from normalised rainbow trout cDNA libraries. BMC Genomics 2006, 7:196.
8. Habermann B., et al. An Ambystoma mexicanum EST sequencing project: analysis of 17,352 expressed sequence tags from embryonic and regenerating blastema cDNA libraries. Genome Biol. 2004, 5:R67.
9. Watanabe S., et al. Identifications of expressed sequence tags from Pacific threadfin (Polydactylus sexfilis) skeletal muscle cDNA library. Aqua. Res. 2010, 41:572-578.
10. Li P., et al. Towards the ictalurid catfish transcriptome: generation and analysis of 31,215 catfish ESTs. BMC Genomics 2007, 8:177.
11. Zhang G., et al. Identification and analysis of muscle-related protein isoforms expressed in the white muscle of the mandarin fish (Siniperca chuatsi). Mar. Biotechnol. 2010, 13:151-162.
12. Altschul S.F., et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 1997, 25:3389-3402.
13. Ashburner M., et al. Gene Ontology: tool for the unification of biology. Nat. Genet. 2000, 25:25-29.
14. Ayres Sa L., et al. Expression of muscle-specific myosin heavy chain and myosin light chain 1 in the electric tissue of Electrophorus electricus (L.) in comparison with other vertebrate species. J. Exp. Zool. 2001, 290:227-233.
15. Bryson-Richardson R.J., et al. Myosin heavy chain expression in zebrafish and slow muscle composition. Dev. Dyn. 2005, 233:1018-1022.
16. Kikuchi K., et al. Characterization of the carp myosin heavy chain multigene family. Gene 1999, 228:189-196.
17. Xu Y., et al. Asynchronous activation of 10 muscle-specific protein (MSP) genes during zebrafish somitogenesis. Dev. Dyn. 2000, 219:201-215.
18. Davoli R., et al. Analysis of expressed sequence tags of porcine skeletal muscle. Gene 1999, 233:181-188.
19. McGuigan K., et al. Evolution of sarcomeric myosin heavy chain genes: evidence from fish. Mol. Biol. Evol. 2004, 21:1042-1056.
20. Gauvry L., et al. Characterisation of red and white muscle myosin heavy chain gene coding sequences from antarctic and tropical fish. Comp. Biochem. Physiol. B Biochem. Mol. Biol. 2000, 127:575-588.
21. Ennion S., et al. Identification and expression analysis of two developmentally regulated myosin heavy chain gene transcripts in carp (Cyprinus carpio). J. Exp. Biol. 1999, 202:1081-1090.
22. Nihei Y., et al. Molecular cloning and mRNA expression analysis of carp embryonic, slow and cardiac myosin heavy chain isoforms. J. Exp. Biol. 2006, 209:188-198.
23. Tao Y., et al. Temperature-dependent expression patterns of grass carp fast skeletal myosin heavy chain genes. Comp. Biochem. Physiol. B Biochem. Mol. Biol. 2004, 139:649-656.
24. Boheler K.R., et al. Skeletal actin mRNA increases in the human heart during ontogenic development and is the major isoform of control and failing adult hearts. J. Clin. Invest. 1991, 88:323-330.
25. Murakami K., et al. Structural basis for calcium-regulated relaxation of striated muscles at interaction sites of troponin with actin and tropomyosin. Adv. Exp. Med. Biol. 2007, 592:71-86.
26. Paul D.M., et al. Structure and orientation of troponin in the thin filament. J. Biol. Chem. 2009, 284:15007-15015.
27. Gillis T.E., Tibbits G.F. Beating the cold: the functional evolution of troponin C in teleost fish. Comp. Biochem. Physiol. A Mol. Integr. Physiol. 2002, 132:763-772.
28. Guignard F., Markert M. The nucleoside diphosphate kinase of human neutrophils. Biochem. J. 1996, 316:233-238.
29. Postel E.H., et al. Human NM23/nucleoside diphosphate kinase regulates gene expression through DNA binding to nuclease-hypersensitive transcriptional elements. J. Bioenerg. Biomem. 2000, 32:277-284.
30. Postel E.H., et al. Human c-myc transcription factor PuF identified as nm23-H2 nucleoside diphosphate kinase, a candidate suppressor of tumor metastasis. Science 1993, 261:478-480.
31. Treberg J.R., et al. Intracellular glucose and binding of hexokinase and phosphofructokinase to particulate fractions increase under hypoxia in heart of the Amazonian armored catfish (Liposarcus pardalis). Physiol. Biochem. Zool. 2007, 80:542-550.
32. Wallimann T., et al. Intracellular compartmentation, structure and function of creatine kinase isoenzymes in tissues with high and fluctuating energy demands: the " phosphocreatine circuit" for cellular energy homeostasis. Biochem. J. 1992, 281:21-40.
33. Rise M.L., et al. Development and application of a salmonid EST database and cDNA microarray: data mining and interspecific hybridization characteristics. Genome Res. 2004, 14:478-490.