-
1
-
-
28544432440
-
Direct observation of base-pair stepping by RNA polymerase
-
DOI 10.1038/nature04268, PII N04268
-
E.A. Abbondanzieri, et al., Direct observation of base-pair stepping by RNA polymerase, Nature 438 (2005) 460-465. (Pubitemid 41742012)
-
(2005)
Nature
, vol.438
, Issue.7067
, pp. 460-465
-
-
Abbondanzieri, E.A.1
Greenleaf, W.J.2
Shaevitz, J.W.3
Landick, R.4
Block, S.M.5
-
2
-
-
12944324227
-
A ratchet mechanism of transcription elongation and its control
-
DOI 10.1016/j.cell.2004.11.045, PII S0092867404011493
-
G. Bar-Nahum, et al., A ratchet mechanism of transcription elongation and its control, Cell 120 (2005) 183-193. (Pubitemid 40174762)
-
(2005)
Cell
, vol.120
, Issue.2
, pp. 183-193
-
-
Bar-Nahum, G.1
Epshtein, V.2
Ruckenstein, A.E.3
Rafikov, R.4
Mustaev, A.5
Nudler, E.6
-
3
-
-
0035827346
-
Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution
-
DOI 10.1126/science.1059493
-
P. Cramer, D.A. Bushnell, R.D. Kornberg, Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution, Science. 292 (2001) 1863-1876. (Pubitemid 32538356)
-
(2001)
Science
, vol.292
, Issue.5523
, pp. 1863-1876
-
-
Cramer, P.1
Bushnell, D.A.2
Kornberg, R.D.3
-
4
-
-
0037015022
-
Using mechanical force to probe the mechanism of pausing and arrest during continuous elongation by Escherichia coli RNA polymerase
-
DOI 10.1073/pnas.142417799
-
N.R. Forde, et al., Using mechanical force to probe the mechanism of pausing and arrest during continuous elongation by Escherichia coli RNA polymerase, Proc Natl Acad Sci USA 99 (2002) 11682-11687. (Pubitemid 34994459)
-
(2002)
Proceedings of the National Academy of Sciences of the United States of America
, vol.99
, Issue.18
, pp. 11682-11687
-
-
Forde, N.R.1
Izhaky, D.2
Woodcock, G.R.3
Wuite, G.J.L.4
Bustamante, C.5
-
5
-
-
0028947453
-
Single-molecule kinetic studies on DNA transcription and transcriptional regulation
-
J. Gelles, et al., Single-molecule kinetic studies on DNA transcription and transcriptional regulation, Biophys. J. 68 (1995) 73S.
-
(1995)
Biophys. J.
, vol.68
-
-
Gelles, J.1
-
6
-
-
0019412155
-
Pausing and termination of transcription within the early region of bacteriophage T7 DNA in vitro
-
G.A. Kassavetis, M.J. Chamberlin, Pausing and termination of transcription within the early region of bacteriophage T7 DNA in vitro, J. Biol. Chem. 256 (1981) 2777-2786.
-
(1981)
J. Biol. Chem.
, vol.256
, pp. 2777-2786
-
-
Kassavetis, G.A.1
Chamberlin, M.J.2
-
7
-
-
0032113494
-
Crucial role of the RNA:DNA hybrid in the processivity of transcription
-
I. Sidorenkov, N. Komissarova, M. Kashlev, Crucial role of the RNA:DNA hybrid in the processivity of transcription, Mol. Cell 2 (1998) 55-64. (Pubitemid 128378966)
-
(1998)
Molecular Cell
, vol.2
, Issue.1
, pp. 55-64
-
-
Sidorenkov, I.1
Komissarova, N.2
Kashlev, M.3
-
8
-
-
33846914726
-
The regulatory roles and mechanism of transcriptional pausing
-
DOI 10.1042/BST0341062
-
R. Landick, The regulatory roles and mechanism of transcriptional pausing, Biochem. Soc. Trans. 34 (2006) 1062-1066. (Pubitemid 46768989)
-
(2006)
Biochemical Society Transactions
, vol.34
, Issue.6
, pp. 1062-1066
-
-
Landick, R.1
-
9
-
-
34547204502
-
A Central Role of the RNA Polymerase Trigger Loop in Active-Site Rearrangement during Transcriptional Pausing
-
DOI 10.1016/j.molcel.2007.06.008, PII S1097276507003747
-
I. Toulokhonov, et al., A central role of the RNA polymerase trigger loop in active-site rearrangement during transcriptional pausing, Mol. Cell 27 (2007) 406-419. (Pubitemid 47126936)
-
(2007)
Molecular Cell
, vol.27
, Issue.3
, pp. 406-419
-
-
Toulokhonov, I.1
Zhang, J.2
Palangat, M.3
Landick, R.4
-
10
-
-
34147206187
-
Backtracking determines the force sensitivity of RNAP II in a factor-dependent manner
-
DOI 10.1038/nature05701, PII NATURE05701
-
E.A. Galburt, et al., Backtracking determines the force sensitivity of RNAP II in a factor-dependent manner, Nature 446 (2007) 820-823. (Pubitemid 46582033)
-
(2007)
Nature
, vol.446
, Issue.7137
, pp. 820-823
-
-
Galburt, E.A.1
Grill, S.W.2
Wiedmann, A.3
Lubkowska, L.4
Choy, J.5
Nogales, E.6
Kashlev, M.7
Bustamante, C.8
-
11
-
-
0346258014
-
Backtracking by single RNA polymerase molecules observed at near-base-pair resolution
-
DOI 10.1038/nature02191
-
J. Shaevitz, et al., Backtracking by single RNA polymerase molecules observed at near-base-pair resolution, Nature 426 (2003) 684-687. (Pubitemid 38009379)
-
(2003)
Nature
, vol.426
, Issue.6967
, pp. 684-687
-
-
Shaevitz, J.W.1
Abbondanzieri, E.A.2
Landick, R.3
Block, S.M.4
-
12
-
-
0031059249
-
Transcriptional arrest: Escherichia coli RNA polymerase translocates backward, leaving the 3′ end of the RNA intact and extruded
-
N. Komissarova, M. Kashlev, Transcriptional arrest: Escherichia coli RNA polymerase translocates backward, leaving the 3′ end of the RNA intact and extruded, Proc Natl Acad Sci USA 94 (1997) 1755-1760.
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 1755-1760
-
-
Komissarova, N.1
Kashlev, M.2
-
13
-
-
38349008878
-
Fluctuations, pauses and backtracking in DNA transcription
-
M. Voliotis, et al., Fluctuations, pauses and backtracking in DNA transcription, Biophys. J. 94 (2008) 334-348.
-
(2008)
Biophys. J.
, vol.94
, pp. 334-348
-
-
Voliotis, M.1
-
14
-
-
15944393126
-
Nature of the nucleosomal barrier to RNA polymerase II
-
DOI 10.1016/j.molcel.2005.02.027
-
M. Kireeva, et al., Nature of the nucleosomal barrier to RNA polymerase II, Mol. Cell 18 (2005) 97-108. (Pubitemid 40444651)
-
(2005)
Molecular Cell
, vol.18
, Issue.1
, pp. 97-108
-
-
Kireeva, M.L.1
Hancock, B.2
Cremona, G.H.3
Walter, W.4
Studitsky, V.M.5
Kashlev, M.6
-
15
-
-
66149143165
-
The origin of short transcriptional pauses
-
M. Depken, E.A. Galburt, S.W. Grill, The origin of short transcriptional pauses, Biophys. J. 96 (2009) 2189-2193.
-
(2009)
Biophys. J.
, vol.96
, pp. 2189-2193
-
-
Depken, M.1
Galburt, E.A.2
Grill, S.W.3
-
16
-
-
57449110975
-
Stochasticity and traffic jams in the transcription of ribosomal RNA: Intriguing role of termination and antitermination
-
S. Klumpp, T. Hwa, Stochasticity and traffic jams in the transcription of ribosomal RNA: intriguing role of termination and antitermination, Proc Natl Acad Sci USA 105 (2008) 18159-18164.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 18159-18164
-
-
Klumpp, S.1
Hwa, T.2
-
17
-
-
12544251077
-
A mathematical model for transcriptional interference by RNA polymerase traffic in Escherichia coli
-
K. Sneppen, et al., A mathematical model for transcriptional interference by RNA polymerase traffic in Escherichia coli, J. Mol. Biol. 346 (2005) 399-409.
-
(2005)
J. Mol. Biol.
, vol.346
, pp. 399-409
-
-
Sneppen, K.1
-
18
-
-
38749103885
-
Interacting RNA polymerase motors on a DNA track: Effects of traffic congestion and intrinsic noise on RNA synthesis
-
T. Tripathi, D. Chowdhury., Interacting RNA polymerase motors on a DNA track: effects of traffic congestion and intrinsic noise on RNA synthesis, Phys. Rev. E Stat. Nonlin. Soft Matter Phys. 77 (2008) 011921.
-
(2008)
Phys. Rev. E Stat. Nonlin. Soft Matter Phys.
, vol.77
, pp. 011921
-
-
Tripathi, T.1
Chowdhury, D.2
-
19
-
-
0002214237
-
An exactly soluble non-equilibrium system: The asymmetric simple exclusion process
-
PII S0370157398000064
-
B. Derrida., An exactly soluble non-equilibrium system: the asymmetric simple exclusion process, Physics Reports. 301 (1998) 65-83. (Pubitemid 128342959)
-
(1998)
Physics Report
, vol.301
, Issue.1-3
, pp. 65-83
-
-
Derrida, B.1
-
20
-
-
0038756088
-
Cooperation between RNA polymerase molecules in transcription elongation
-
DOI 10.1126/science.1083219
-
V. Epshtein, E. Nudler, Cooperation between RNA polymerase molecules in transcription elongation, Science. 300 (2003) 801-805. (Pubitemid 36532116)
-
(2003)
Science
, vol.300
, Issue.5620
, pp. 801-805
-
-
Epshtein, V.1
Nudler, E.2
-
21
-
-
0141625269
-
Transcription through the roadblocks: The role of RNA polymerase cooperation
-
DOI 10.1093/emboj/cdg452
-
V. Epshtein, et al., Transcription through the roadblocks: the role of RNA polymerase cooperation, EMBO J. 22 (2003) 4719-4727. (Pubitemid 37162908)
-
(2003)
EMBO Journal
, vol.22
, Issue.18
, pp. 4719-4727
-
-
Epshtein, V.1
Toulme, F.2
Rachid, R.A.3
Borukhov, S.4
Nudler, E.5
-
22
-
-
67651095903
-
Stability, flexibility, and dynamic interactions of colliding RNA polymerase II elongation complexes
-
H. Saeki, J.Q. Svejstrup, Stability, flexibility, and dynamic interactions of colliding RNA polymerase II elongation complexes, Mol. Cell 35 (2009) 191-205.
-
(2009)
Mol. Cell
, vol.35
, pp. 191-205
-
-
Saeki, H.1
Svejstrup, J.Q.2
-
23
-
-
77953287072
-
Synergistic action of RNA polymerases in overcoming the nucleosomal barrier
-
J. Jin, et al., Synergistic action of RNA polymerases in overcoming the nucleosomal barrier, Nat. Struct. Mol. Biol. 17 (2010) 745-752.
-
(2010)
Nat. Struct. Mol. Biol.
, vol.17
, pp. 745-752
-
-
Jin, J.1
-
24
-
-
77951589688
-
Cooperation between translating ribosomes and RNA polymerase in transcription elongation
-
S. Proshkin, et al., Cooperation between translating ribosomes and RNA polymerase in transcription elongation, Science. 328 (2010) 504-508.
-
(2010)
Science
, vol.328
, pp. 504-508
-
-
Proshkin, S.1
-
25
-
-
17644443277
-
A motor that makes its own track: Helicase unwinding of DNA
-
M.D. Betterton, F. Jülicher, A motor that makes its own track: helicase unwinding of DNA, Phys. Rev. Lett. 91 (2003) 258103.
-
(2003)
Phys. Rev. Lett.
, vol.91
, pp. 258103
-
-
Betterton, M.D.1
Jülicher, F.2
-
26
-
-
41349092240
-
Opening of nucleic-acid double strands by helicases: Active versus passive opening
-
M.D. Betterton, F. Jülicher., Opening of nucleic-acid double strands by helicases: active versus passive opening, Phys. Rev. E Stat. Nonlin. Soft Matter Phys. 71 (2005) 011904.
-
(2005)
Phys. Rev. E Stat. Nonlin. Soft Matter Phys.
, vol.71
, pp. 011904
-
-
Betterton, M.D.1
Jülicher, F.2
-
29
-
-
34547275473
-
Brownian motion in a field of force and the diffusion model of chemical reactions
-
H.A. Kramers, Brownian motion in a field of force and the diffusion model of chemical reactions, Physica. 7 (1940) 284-304.
-
(1940)
Physica
, vol.7
, pp. 284-304
-
-
Kramers, H.A.1
-
31
-
-
69749086880
-
Single-molecule analysis reveals differential effect of ssDNA-binding proteins on DNA translocation by XPD helicase
-
M.Honda, et al., Single-molecule analysis reveals differential effect of ssDNA-binding proteins on DNA translocation by XPD helicase, Mol. Cell 35 (2009) 694-703.
-
(2009)
Mol. Cell
, vol.35
, pp. 694-703
-
-
Honda, M.1
|