ENGINES: Exploring single nucleotide variation in entire human genomes

BMC Bioinformatics

Volumn 12, Issue , 2011, Pages

  Amigo, Jorge ^a,b   Salas, Antonio ^b   Phillips, Christopher ^b  

^a UNIVERSITY OF SANTIAGO DE COMPOSTELA   (Spain)

^b UNIVERSITY OF SANTIAGO DE COMPOSTELA   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

AMOUNT OF INFORMATION; DATA REPOSITORIES; GENETIC DIFFERENTIATION; POPULATION ANALYSIS; POPULATION GENETICS; SINGLE NUCLEOTIDES; SINGLE-NUCLEOTIDE POLYMORPHISMS; STATISTICAL INFORMATION;

DATA VISUALIZATION; ENGINES; FORESTRY; NUCLEOTIDES; POPULATION STATISTICS; TOOLS;

GENES;

ARTICLE; COMPUTER PROGRAM; DNA SEQUENCE; GENETIC DATABASE; HUMAN; HUMAN GENOME; HUMAN GENOME PROJECT; POPULATION GENETICS; SINGLE NUCLEOTIDE POLYMORPHISM;

DATABASES, GENETIC; GENETICS, POPULATION; GENOME, HUMAN; HUMAN GENOME PROJECT; HUMANS; POLYMORPHISM, SINGLE NUCLEOTIDE; SEQUENCE ANALYSIS, DNA; SOFTWARE;

EID: 79957866400     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-12-105     Document Type: Article

References (10)

1. Peacock E, Whiteley P. Perlegen sciences, inc. Pharmacogenomics 2005, 6(4):439-442. 10.1517/14622416.6.4.439, 16004563.
2. The International HapMap Consortium A haplotype map of the human genome. Nature 2005, 437(7063):1299-1320. 10.1038/nature04226, 1880871, 16255080, The International HapMap Consortium.
3. Li JZ, Absher DM, Tang H, Southwick AM, Casto AM, Ramachandran S, Cann HM, Barsh GS, Feldman M, Cavalli-Sforza LL, Myers RM. Worldwide human relationships inferred from genome-wide patterns of variation. Science (New York, NY 2008, 319(5866):1100-1104.
4. Amigo J, Phillips C, Salas A, Carracedo A. Viability of in-house datamarting approaches for population genetics analysis of SNP genotypes. BMC Bioinformatics 2009, 10(Suppl 3):S5. 10.1186/1471-2105-10-S3-S5, 2665053, 19344481.
5. Amigo J, Salas A, Phillips C, Carracedo A. SPSmart: adapting population based SNP genotype databases for fast and comprehensive web access. BMC Bioinformatics 2008, 9:428. 10.1186/1471-2105-9-428, 2576268, 18847484.
6. Pritchard JK, Stephens M, Donnelly P. Inference of population structure using multilocus genotype data. Genetics 2000, 155(2):945-959. 1461096, 10835412.
7. Excoffier L, Laval G, Schneider S. Arlequin ver. 3.0: An integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online 2005, 1:47-50. 2658868, 19325852.
8. Durbin RM, Abecasis GR, Altshuler DL, Auton A, Brooks LD, Gibbs RA, Hurles ME, McVean GA. A map of human genome variation from population-scale sequencing. Nature 2010, 467(7319):1061-1073. 10.1038/nature09534, 3042601, 20981092.
9. Lewontin RC, Krakauer J. Distribution of gene frequency as a test of the theory of the selective neutrality of polymorphisms. Genetics 1973, 74(1):175-195. 1212935, 4711903.
10. Akey JM, Zhang G, Zhang K, Jin L, Shriver MD. Interrogating a high-density SNP map for signatures of natural selection. Genome Res 2002, 12(12):1805-1814. 10.1101/gr.631202, 187574, 12466284.