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Volumn 10, Issue , 2011, Pages 109-120

A comparison of methods for data-driven cancer outlier discovery, and an application scheme to semisupervised predictive biomarker discovery

Author keywords

Biomarkers; Cancer; Outliers; Semisupervised; Translational

Indexed keywords

BIOLOGICAL MARKER; CYTOKERATIN 14; FIBRINOGEN; OSTEOPONTIN; PYRROLINE 5 CARBOXYLATE REDUCTASE; TRANSCRIPTION FACTOR MASH1;

EID: 79957852496     PISSN: 11769351     EISSN: 11769351     Source Type: Journal    
DOI: 10.4137/CIN.S6868     Document Type: Article
Times cited : (22)

References (22)
  • 2
    • 33751377929 scopus 로고    scopus 로고
    • COPA-cancer outlier profile analysis
    • MacDonald J, Ghosh D. COPA-cancer outlier profile analysis. Bioinformatics. 2006;22(23):2950-1.
    • (2006) Bioinformatics , vol.22 , Issue.23 , pp. 2950-2951
    • Macdonald, J.1    Ghosh, D.2
  • 3
    • 77649267397 scopus 로고    scopus 로고
    • Bimodal gene expression and biomarker discovery
    • Ertel A. Bimodal gene expression and biomarker discovery. Cancer Informatics. 2010;9:11-4.
    • (2010) Cancer Informatics , vol.9 , pp. 11-14
    • Ertel, A.1
  • 4
    • 77649269338 scopus 로고    scopus 로고
    • The bimodality index: A criterion for discovering and ranking bimodal signatures form cancer gene expression profiling data
    • Wang J, Wen S, Symmans W, Pusztai L, Coombes K. The bimodality index: a criterion for discovering and ranking bimodal signatures form cancer gene expression profiling data. Cancer Informatics. 2009;7:199-216.
    • (2009) Cancer Informatics , vol.7 , pp. 199-216
    • Wang, J.1    Wen, S.2    Symmans, W.3    Pusztai, L.4    Coombes, K.5
  • 5
    • 78049263544 scopus 로고    scopus 로고
    • Large-scale analysis of network bistability for human cancers
    • e1000851
    • Shiraishi T, Matsuyama S, Kitano H. Large-scale analysis of network bistability for human cancers. PLOS Comp Biol. 2010;6(7):e1000851.
    • (2010) PLOS Comp Biol , vol.6 , Issue.7
    • Shiraishi, T.1    Matsuyama, S.2    Kitano, H.3
  • 6
    • 34548799629 scopus 로고    scopus 로고
    • A strategy for predicting the chemosensitivity of human cancers and its application to drug discovery
    • Lee JK, Havaleshko DM, Cho H, et al. A strategy for predicting the chemosensitivity of human cancers and its application to drug discovery. PNAS. 2007:13086-91.
    • (2007) PNAS , pp. 13086-13091
    • Lee, J.K.1    Havaleshko, D.M.2    Cho, H.3
  • 7
    • 77649291278 scopus 로고    scopus 로고
    • Breast cancer cell lines carry cell line -specific genomic alterations that are distinct from aberrations in breast cancer tissues: Comparison of the CGH profiles between cancer cell lines and primary cancer tissues
    • Tsuji K, Kawauchi S, Saito S, Furuya T, Ikemoto K, Nakao M, et al. Breast cancer cell lines carry cell line -specific genomic alterations that are distinct from aberrations in breast cancer tissues: comparison of the CGH profiles between cancer cell lines and primary cancer tissues. BMC Cancer. 2010;10:15.
    • (2010) BMC Cancer , vol.10 , pp. 15
    • Tsuji, K.1    Kawauchi, S.2    Saito, S.3    Furuya, T.4    Ikemoto, K.5    Nakao, M.6
  • 8
    • 0035923521 scopus 로고    scopus 로고
    • Classification of human lung carcinomas by Mrna expression profiling reveals distinct adenocarcinoma subclasses
    • Bhattacharjee ARW. Classification of human lung carcinomas by Mrna expression profiling reveals distinct adenocarcinoma subclasses. PNAS. 2001:13790-5.
    • (2001) PNAS , pp. 13790-13795
    • Bhattacharjee, A.R.W.1
  • 9
    • 45849096393 scopus 로고    scopus 로고
    • MOST: Detecting cancer differential gene expression
    • Lian H. MOST: detecting cancer differential gene expression. Biostatistics. 2008;9(3):411-8.
    • (2008) Biostatistics , vol.9 , Issue.3 , pp. 411-418
    • Lian, H.1
  • 10
    • 77957132222 scopus 로고    scopus 로고
    • LSOSS: Detection of cancer outlier differential gene expression
    • Wang Y, Rekaya R. LSOSS: detection of cancer outlier differential gene expression. Biomarker Insights. 2010;5:69-78.
    • (2010) Biomarker Insights , vol.5 , pp. 69-78
    • Wang, Y.1    Rekaya, R.2
  • 11
    • 34648817312 scopus 로고    scopus 로고
    • Cancer outlier differential gene expression detection
    • Wu B. Cancer outlier differential gene expression detection. Biostatistics. 2007;8(3):566-75.
    • (2007) Biostatistics , vol.8 , Issue.3 , pp. 566-575
    • Wu, B.1
  • 12
    • 33845439074 scopus 로고    scopus 로고
    • Outlier sums for differential gene expression analysis
    • Tibshirani R, Hastie T. Outlier sums for differential gene expression analysis. Biostatistics. 2007;8(1):2-8.
    • (2007) Biostatistics , vol.8 , Issue.1 , pp. 2-8
    • Tibshirani, R.1    Hastie, T.2
  • 13
    • 44349099162 scopus 로고    scopus 로고
    • Human ASH1 expression in prostate cancer with neuroendocrine differentiation
    • Rapa I, Ceppi P, Bollito E, Rosas R, Cappia S, Bacillo E, et al. Human ASH1 expression in prostate cancer with neuroendocrine differentiation. Mod Pathol. 2008;21(6):700-7.
    • (2008) Mod Pathol , vol.21 , Issue.6 , pp. 700-707
    • Rapa, I.1    Ceppi, P.2    Bollito, E.3    Rosas, R.4    Cappia, S.5    Bacillo, E.6
  • 14
    • 27644590261 scopus 로고    scopus 로고
    • Upregulation of ASCL1 and inhibition of Notch signaling pathway characterize progressive astrocytoma
    • Somasundaram K, Reddy S, Vinnakota K, Britto R, Subbarayan M, Nambiar S, et al. Upregulation of ASCL1 and inhibition of Notch signaling pathway characterize progressive astrocytoma. Oncogene. 2005;27(47):7073-83.
    • (2005) Oncogene , vol.27 , Issue.47 , pp. 7073-7083
    • Somasundaram, K.1    Reddy, S.2    Vinnakota, K.3    Britto, R.4    Subbarayan, M.5    Nambiar, S.6
  • 15
    • 79957865581 scopus 로고    scopus 로고
    • Hypercalcemia. Sep 1 2010. Retrieved Nov 24 2010, from Emedicine
    • Hemphill R. Hypercalcemia. Sep 1 2010. Retrieved Nov 24 2010, from Emedicine: http://emedicine.medscape.com/article/766373-overview.
    • Hemphill, R.1
  • 16
    • 67349269881 scopus 로고    scopus 로고
    • Elevated level of inhibin-alpha subunit is pro-tumourigenic and pro-metastatic and associated with extracapsular spread in advanced prostate cancer
    • Balanathan P, Williams E, Wang H, Pedersen J, Horvath L, Achen M, et al. Elevated level of inhibin-alpha subunit is pro-tumourigenic and pro-metastatic and associated with extracapsular spread in advanced prostate cancer. Br J Cancer. 2009;100(11):1784-93.
    • (2009) Br J Cancer , vol.100 , Issue.11 , pp. 1784-1793
    • Balanathan, P.1    Williams, E.2    Wang, H.3    Pedersen, J.4    Horvath, L.5    Achen, M.6
  • 17
    • 0024455195 scopus 로고
    • Inhibin as a marker for granulosa-cell tumors
    • Lappöhn R, Burger H, Bouma J. Inhibin as a marker for granulosa-cell tumors. N Engl J Med. 1989;321(12):790-3.
    • (1989) N Engl J Med , vol.321 , Issue.12 , pp. 790-793
    • Lappöhn, R.1    Burger, H.2    Bouma, J.3
  • 18
    • 65449116034 scopus 로고    scopus 로고
    • Messina: A novel analysis tool to identify biologically relevant molecules in disease
    • Pinese M, Scarlett C, Kench J, Colvin E, Segara D, Henshall S, et al. Messina: a novel analysis tool to identify biologically relevant molecules in disease. PLOS One. 2009;4(4):e5337.
    • (2009) PLOS One , vol.4 , Issue.4
    • Pinese, M.1    Scarlett, C.2    Kench, J.3    Colvin, E.4    Segara, D.5    Henshall, S.6
  • 19
    • 0003785350 scopus 로고
    • D'Agostino R, Stephens M. Goodness of Fit Techniques. New York: Marcel Dekker
    • Stephens M. Tests based on EDF statistcs. In: D'Agostino R, Stephens M. Goodness of Fit Techniques. New York: Marcel Dekker; 1986.
    • (1986) Tests Based On EDF Statistcs
    • Stephens, M.1
  • 20
    • 27344451557 scopus 로고    scopus 로고
    • Recurrent fusion of TMPRSS2 and ETS transcription factor genes in prostate cancer
    • Tomlins S, Rhodes D, Perner S, Dhanasekaran S, Mehra R, Sun X, et al. Recurrent fusion of TMPRSS2 and ETS transcription factor genes in prostate cancer. Science. 2005;310(5748):644-8.
    • (2005) Science , vol.310 , Issue.5748 , pp. 644-648
    • Tomlins, S.1    Rhodes, D.2    Perner, S.3    Dhanasekaran, S.4    Mehra, R.5    Sun, X.6
  • 21
    • 41149143617 scopus 로고    scopus 로고
    • Multiple gene methylation of nonsmall cell lung cancers evaluated with 3-dimensional microarray
    • Wang Y, Zhang D, Zheng W, Luo J, Bai Y, Lu Z. Multiple gene methylation of nonsmall cell lung cancers evaluated with 3-dimensional microarray. Cancer. 2008;112(6):1325-36.
    • (2008) Cancer , vol.112 , Issue.6 , pp. 1325-1336
    • Wang, Y.1    Zhang, D.2    Zheng, W.3    Luo, J.4    Bai, Y.5    Lu, Z.6
  • 22
    • 0036790467 scopus 로고    scopus 로고
    • Activins, inhibins, and follistatins: From endocrinology to signaling. A paradigm for the new millennium
    • Welt C, Sidis Y, Keutmann H, Schneyer A. Activins, inhibins, and follistatins: from endocrinology to signaling. A paradigm for the new millennium. Exp. Biol Med. 2002;227(9):724-52.
    • (2002) Exp. Biol Med , vol.227 , Issue.9 , pp. 724-752
    • Welt, C.1    Sidis, Y.2    Keutmann, H.3    Schneyer, A.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.