A protein-based electrochemical method for label-free characterization of sequence-specific protein-DNA interactions

Electrochimica Acta

Volumn 56, Issue 16, 2011, Pages 5759-5765

  Xu, Jinhai ^a   He, Xiaodie ^a   Jin, Liling ^a   Jiang, Lan ^b   Zhou, Yifeng ^b   Kang, Zhenghui ^a   Peng, Rui ^a   Lee, Shuit Tong ^a,c  

^a SOOCHOW UNIVERSITY   (China)

^b MEDICAL COLLEGE OF SOOCHOW UNIVERSITY   (China)

^c CITY UNIVERSITY OF HONG KONG   (Hong Kong)

Author keywords

Electrochemistry; Sequence specific protein DNA interaction; Surface functionalization; Transcription factor Sp1

Indexed keywords

BINDING SEQUENCE; BIOLOGICAL PATHWAYS; CHARGE TRANSFER RESISTANCE; COMPREHENSIVE STUDIES; DNA COMPLEX; DNA FRAGMENT; DNA SAMPLES; DNA TARGETS; DNA-BINDING PROTEIN; ELECTROCHEMICAL METHODS; FUNCTIONALIZED; GLASS CARBON ELECTRODES; HIGH AFFINITY; LABEL FREE; LOW DETECTION LIMIT; MOLECULAR MECHANISM; PROTEIN FACTORS; PROTEIN-DNA INTERACTIONS; PULSE VOLTAMMETRY; RAPID MONITORING; SEQUENCE DIVERSITY; SP1 BINDING SITES; SPECIFIC INTERACTION; SURFACE FUNCTIONALIZATION; TESTING SAMPLES; TWO-POINT; WILD TYPES;

CHARGE TRANSFER; COMPLEXATION; ELECTROCHEMICAL CORROSION; ELECTROCHEMICAL IMPEDANCE SPECTROSCOPY; ELECTROCHEMISTRY; GENE EXPRESSION REGULATION; GLASS MEMBRANE ELECTRODES; LAKES; RHENIUM COMPOUNDS; SURFACE TESTING; TRANSCRIPTION; TRANSCRIPTION FACTORS;

DNA;

EID: 79957803730     PISSN: 00134686     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.electacta.2011.04.050     Document Type: Article

References (64)

1. H.F. Lodish Molecular Cell Biology 5th ed. 2004 W.H. Freeman and Company
2. M.L. DePamphilis DNA Replication and Disease 1st ed. 2006 Cold Spring Harbor Laboratory Press Cold Spring Harbor, NY
3. F.H. Epstein, and D.S. Latchman N. Engl. J. Med. 334 1996 28
4. C.O. Pabo, and R.T. Sauer Annu. Rev. Biochem. 53 1984 293
5. C. Wolberger Curr. Opin. Struct. Biol. 3 1993 3
6. L. Jen-Jacobson Biopolymers 44 1997 153
7. T. Fujita, G.P. Nolan, S. Ghosh, and D. Baltimore Genes Dev. 6 1992 775
8. P. Bucher J. Mol. Biol. 212 1990 563
9. R.W. Kriwacki, S.C. Schultz, T.A. Steitz, and J.P. Caradonna P. Natl. Acad. Sci. U. S. A. 89 1992 9759
10. D.J. Galas, and A. Schmitz Nucleic Acids Res. 5 1978 3157
11. H.H. Hassanain, W. Dai, and S.L. Gupta Anal. Biochem. 213 1993 162
12. D.H. Coombs, and G.D. Pearson Proc. Natl. Acad. Sci. U.S.A. 75 1978 5291
13. F. Huber, M. Hegner, C. Gerber, H.-J. Güntherodt, and H.P. Lang Biosens. Bioelectron. 21 2006 1599
14. B.J. Cheskis, S. Karathanasis, and C.R. Lyttle J. Biol. Chem. 272 1997 11384
15. S.J. Neo, X. Su, and J.S. Thomsen Anal. Chem. 81 2009 3344
16. H.F. Teh, W.Y.X. Peh, X. Su, and J.S. Thomsen Biochemistry 46 2007 2127
17. X. Su, R. Robelek, Y. Wu, G. Wang, and W. Knoll Anal. Chem. 76 2003 489
18. B. Zhang, J. Yao, H. Yan, and W. Fu Sens. Actuators B 149 2010 259
19. G. Liu, Y. Wan, V. Gau, J. Zhang, L. Wang, S. Song, and C. Fan J. Am. Chem. Soc. 130 2008 6820
20. Y. Xiao, A.A. Lubin, A.J. Heeger, and K.W. Plaxco Angew. Chem. Int. Ed. 44 2005 5456
21. N. Yang, H. Uetsuka, O.A. Williams, E. Osawa, N. Tokuda, and C.E. Nebel Phys. Status Solidi (a) 206 2009 2048
22. N. Yang, H. Uetsuka, and C.E. Nebel Diamond Relat. Mater. 18 2009 592
23. G. Liu, C. Sun, D. Li, S. Song, B. Mao, C. Fan, and Z. Tian Adv. Mater. 22 2010 2148
24. H. Pei, N. Lu, Y. Wen, S. Song, Y. Liu, H. Yan, and C. Fan Adv. Mater. 22 2010 4754
25. Y. Wan, J. Zhang, G. Liu, D. Pan, L. Wang, S. Song, and C. Fan Biosens. Bioelectron. 24 2009 1209
26. A.L. Ghindilis, M.W. Smith, K.R. Schwarzkopf, K.M. Roth, K. Peyvan, S.B. Munro, M.J. Lodes, A.G. Stover, K. Bernards, K. Dill, and A. McShea Biosens. Bioelectron. 22 2007 1853
27. D. Li, S. Song, and C. Fan Acc. Chem. Res. 43 2010 631
28. A. Sassolas, B.D. Leca-Bouvier, and L.J. Blum Chem. Rev. 108 2007 109
29. O.A. Sadik, A.O. Aluoch, and A. Zhou Biosens. Bioelectron. 24 2009 2749
30. Y. Jin Anal. Chim. Acta 634 2009 44
31. R. Meunier-Prest, A. Bouyon, E. Rampazzi, S. Raveau, P. Andreoletti, and M. Cherkaoui-Malki Biosens. Bioelectron. 25 2010 2598
32. H. Chang, and J. Li Electrochem. Commun. 11 2009 2101
33. G.A. Evtugyn, A.V. Porfireva, T. Hianik, M.S. Cheburova, and H.C. Budnikov Electroanalysis 20 2008 1300
34. H. Cai, T.M.-H. Lee, and I.M. Hsing Sens. Actuators B 114 2006 433
35. H. Chen, X.-J. Liu, Y.-L. Liu, J.-H. Jiang, G.-L. Shen, and R.-Q. Yu Biosens. Bioelectron. 24 2009 1955
36. M. Cho, S. Lee, S.-Y. Han, J.-Y. Park, M.A. Rahman, Y.-B. Shim, and C. Ban Nucleic Acids Res. 34 2006 e75-
37. A. Han, T. Takarada, T. Shibata, M. Nakayama, and M. Maeda Anal. Sci. 22 2006 663
38. A. Han, T. Shibata, T. Takarada, and M. Maeda Nucleic Acids Symp. 2 2002 287
39. A. Numnuam, P. Kanatharana, B. Mattiasson, P. Asawatreratanakul, B. Wongkittisuksa, C. Limsakul, and P. Thavarungkul Biosens. Bioelectron. 24 2009 2559
40. G.-J. Zhang, M.J. Huang, Z.H.H. Luo, G.K.I. Tay, E.-J.A. Lim, E.T. Liu, and J.S. Thomsen Biosens. Bioelectron. 26 2010 365
41. M.R. Briggs, J.T. Kadonaga, S.P. Bell, and R. Tjian Science 234 1986 47
42. J.T. Kadonaga, K.R. Carner, F.R. Masiarz, and R. Tjian Cell 51 1987 1079
43. E. Gasteiger, A. Gattiker, C. Hoogland, I. Ivanyi, R.D. Appel, and A. Bairoch Nucleic Acids Res. 31 2003 3784
44. P. Stothard Biotechniques 28 2000 1102
45. K.M. Millan, and S.R. Mikkelsen Anal. Chem. 65 1993 2317
46. S.-M. Park, and J.-S. Yoo Anal. Chem. 75 455 2003 A-461 A
47. N. Bijnens, V. Vermeeren, M. Daenen, L. Grieten, K. Haenen, S. Wenmackers, O.A. Williams, M. Ameloot, M. vandeVen, L. Michiels, and P. Wagner Phys. Status Solidi (a) 206 2009 520
48. J. Huang, G. Yang, W. Meng, L. Wu, A. Zhu, and X.A. Jiao Biosens. Bioelectron. 25 2010 1204
49. D.J. Hart, R.E. Speight, J.M. Blackburn, M.A. Cooper, and J.D. Sutherland Nucleic Acids Res. 27 1999 1063
50. J. Sambrook, and D. Russell Molecular Cloning: A Laboratory Manual 3rd ed. 2001 Cold Spring Harbor Laboratory Press Cold Spring Harbor, NY
51. D. Shanmukaraj, S. Grugeon, G. Gachot, S. Laruelle, D. Mathiron, J.-M. Tarascon, and M. Armand J. Am. Chem. Soc. 132 2010 3055
52. P. Du, H. Li, Z. Mei, and S. Liu Bioelectrochemistry 75 2009 37
53. A. Bogomolova, E. Komarova, K. Reber, T. Gerasimov, O. Yavuz, S. Bhatt, and M. Aldissi Anal. Chem. 81 2009 3944
54. C. Li, X. Li, X. Liu, and H.-B. Kraatz Anal. Chem. 2010
55. N. Zhou, T. Yang, C. Jiang, M. Du, and K. Jiao Talanta 77 2009 1021
56. G. Li, X. Li, J. Wan, and S. Zhang Biosens. Bioelectron. 24 2009 3281
57. N. Wei, J. Chen, J. Zhang, K. Wang, X. Xu, J. Lin, G. Li, X. Lin, and Y. Chen Talanta 78 2009 1227
58. S. Zhang, N. Wang, H. Yu, Y. Niu, and C. Sun Bioelectrochemistry 67 2005 15
59. L. Chen, X. Cao, and J. Zhang Appl. Surf. Sci. 256 2010 1647
60. W. Sanders, and M.R. Anderson J. Colloid Interface Sci. 342 2010 499
61. Q. Sheng, J. Wang, J. Zheng, Z. Xu, and H. Zhang Biosens. Bioelectron. 25 2010 2071
62. H. Ago, K. Petritsch, M.S.P. Shaffer, A.H. Windle, and R.H. Friend Adv. Mater. 11 1999 1281
63. R. Ray, R.C. Snyder, S. Thomas, C.A. Koller, and D.M. Miller J. Clin. Invest. 83 1989 2003
64. K.A. Jones, J.T. Kadonaga, P.A. Luciw, and R. Tjian Science 232 1986 755