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Volumn 16, Issue 2, 2011, Pages 216-228

Parameter estimation and dynamic control analysis of central carbon metabolism in Escherichia coli

Author keywords

central metabolism; Escherichia coli; metabolic control analysis; metabolic flux analysis; parameter estimation

Indexed keywords

BRANCH POINTS; CARBON METABOLISM; CENTRAL METABOLISM; DYNAMIC CONTROLS; ESCHERICHIA COLI (E. COLI); EXPERIMENTAL MEASUREMENTS; INTRACELLULAR CONCENTRATION; KEY PARAMETERS; METABOLIC CONTROL ANALYSIS; METABOLIC FLUX; METABOLIC FLUX ANALYSIS; METABOLIC PATHWAYS; PHOSPHOTRANSFERASES; TRANSIENT CONDITIONS;

EID: 79957797616     PISSN: 12268372     EISSN: 19763816     Source Type: Journal    
DOI: 10.1007/s12257-010-0238-1     Document Type: Article
Times cited : (8)

References (25)
  • 2
    • 0031214696 scopus 로고    scopus 로고
    • Flux amplification in complex metabolic networks
    • DOI 10.1016/S0009-2509(97)00077-8, PII S0009250997000778
    • G. N. Stephanopoulos T. W. Simpson 1997 Flux amplification in complex metabolic networks Chem. Eng. Sci. 52 2607 2627 10.1016/S0009-2509(97)00077-8 1:CAS:528:DyaK2sXkvFCqtrw%3D (Pubitemid 27347420)
    • (1997) Chemical Engineering Science , vol.52 , Issue.15 , pp. 2607-2627
    • Stephanopoulos, G.1    Simpson, T.W.2
  • 3
    • 0029764209 scopus 로고    scopus 로고
    • A direct comparison of approaches for increasing carbon flow to aromatic biosynthesis in Escherichia coli
    • 10.1007/BF01570148 1:CAS:528:DyaK28XmtFSlsr4%3D
    • G. Gosset J. Y. Xiao A. Berry 1996 A direct comparison of approaches for increasing carbon flow to aromatic biosynthesis in Escherichia coli J. Indust. Microbiol. 17 47 52 10.1007/BF01570148 1:CAS:528:DyaK28XmtFSlsr4%3D
    • (1996) J. Indust. Microbiol. , vol.17 , pp. 47-52
    • Gosset, G.1    Xiao, J.Y.2    Berry, A.3
  • 4
    • 0030571222 scopus 로고    scopus 로고
    • Pathway analysis, engineering, and physiological considerations for redirecting central metabolism
    • DOI 10.1002/(SICI)1097-0290(19961005)52:1<129::AID-BIT13>3.0.CO;2-J
    • J. C. Liao S. Hou Y. Chao 1996 Pathway analysis, engineering and physiological considerations for redirecting central metabolism Biotech.Bioeng. 52 129 140 10.1002/(SICI)1097-0290(19961005)52:1<129::AID-BIT13>3.0.CO;2-J 1:CAS:528:DyaK28XlvFaitLs%3D (Pubitemid 26317947)
    • (1996) Biotechnology and Bioengineering , vol.52 , Issue.1 , pp. 129-140
    • Liao, J.C.1    Hou, S.-Y.2    Chao, Y.-P.3
  • 5
    • 0034700257 scopus 로고    scopus 로고
    • Design of large metabolic responses. Constraints and sensitivity analysis
    • 10.1006/jtbi.2000.2173 1:CAS:528:DC%2BD3cXntlWnu7w%3D
    • L. Acerenza 2000 Design of large metabolic responses. Constraints and sensitivity analysis J. Theor. Biol. 207 265 282 10.1006/jtbi.2000.2173 1:CAS:528:DC%2BD3cXntlWnu7w%3D
    • (2000) J. Theor. Biol. , vol.207 , pp. 265-282
    • Acerenza, L.1
  • 7
    • 33744501566 scopus 로고    scopus 로고
    • Kinetic modeling to optimize pentose fermentation in Zymomonas mobilis
    • DOI 10.1002/bit.20843
    • M. M. Altintas C. K. Eddy M. Zhang J. D. McMillan D. S. Kompala 2006 Kinetic modeling to optimize pentose fermentation in Zymomonasmobilis Biotech. Bioeng. 94 273 295 10.1002/bit.20843 1:CAS:528:DC%2BD28XkvFWjur0%3D (Pubitemid 43803779)
    • (2006) Biotechnology and Bioengineering , vol.94 , Issue.2 , pp. 273-295
    • Altintas, M.M.1    Eddy, C.K.2    Zhang, M.3    McMillan, J.D.4    Kompala, D.S.5
  • 8
    • 0037466509 scopus 로고    scopus 로고
    • Sensitivity analysis of stoichiometric networks: An extension of metabolic control analysis to non-steady state trajectories
    • DOI 10.1016/S0022-5193(03)00011-0
    • B. P. Ingalls H. M. Sauro 2003 Sensitivity analysis of stoichiometric networks: An extension of metabolic control analysis to non-steady state trajectories J. Theor. Biol. 222 23 36 10.1016/S0022-5193(03)00011-0 (Pubitemid 36434077)
    • (2003) Journal of Theoretical Biology , vol.222 , Issue.1 , pp. 23-36
    • Ingalls, B.P.1    Sauro, H.M.2
  • 9
    • 0031214207 scopus 로고    scopus 로고
    • Dynamic sensitivity analysis for metabolic systems
    • DOI 10.1016/S0009-2509(97)00075-4, PII S0009250997000754
    • K. Mauch S. Arnold M. Reuss 1997 Dynamic sensitivity analysis for metabolic systems Chem. Eng. Sci. 52 2589 2598 10.1016/S0009-2509(97)00075-4 1:CAS:528:DyaK2sXkvFCqtr4%3D (Pubitemid 27347418)
    • (1997) Chemical Engineering Science , vol.52 , Issue.15 , pp. 2589-2598
    • Mauch, K.1    Arnold, S.2    Reuss, M.3
  • 10
    • 0034253209 scopus 로고    scopus 로고
    • Metabolic control analysis for lysine synthesis using Corynebacteriumglutamicum and experimental verification
    • 1:CAS:528:DC%2BD3cXntlyjtbo%3D
    • Q. Hua C. Yang K. Shimizu 2000 Metabolic control analysis for lysine synthesis using Corynebacteriumglutamicum and experimental verification J. Biosci. Bioeng. 90 184 192 1:CAS:528:DC%2BD3cXntlyjtbo%3D
    • (2000) J. Biosci. Bioeng. , vol.90 , pp. 184-192
    • Hua, Q.1    Yang, C.2    Shimizu, K.3
  • 11
    • 5044227742 scopus 로고    scopus 로고
    • The evolution of molecular biology into systems biology
    • DOI 10.1038/nbt1020
    • H. V. Westerhoff B. O. Palsson 2004 The evolution of molecular biology into systems biology Nat. Biotech. 22 1249 1252 10.1038/nbt1020 1:CAS:528:DC%2BD2cXotFGqurc%3D (Pubitemid 39336777)
    • (2004) Nature Biotechnology , vol.22 , Issue.10 , pp. 1249-1252
    • Westerhoff, H.V.1    Palsson, B.O.2
  • 12
    • 1342265607 scopus 로고    scopus 로고
    • Experimental design in systems biology, based on parameter sensitivity analysis using a Monte-Carlo method: A case study for the TNFα-mediated NF-κB signal transduction pathway
    • 10.1177/0037549703040943
    • K. Cho S. Shin W. Kolch O. Wolkenhauer 2003 Experimental design in systems biology, based on parameter sensitivity analysis using a Monte-Carlo method: A case study for the TNFα-mediated NF-κB signal transduction pathway Simulation 79 726 739 10.1177/0037549703040943
    • (2003) Simulation , vol.79 , pp. 726-739
    • Cho, K.1    Shin, S.2    Kolch, W.3    Wolkenhauer, O.4
  • 13
    • 13844296861 scopus 로고    scopus 로고
    • In silico identification of the key components and steps in IFN-γ induced JAK-STAT signaling pathway
    • DOI 10.1016/j.febslet.2005.01.009
    • Z. Zi K. Cho M. Sung X. Xia J. Zheng Z. Sun 2005 In silico identification of the key components and steps in IFN-γ induced JAK-STAT signaling pathway FEBS Lett. 579 1101 1108 10.1016/j.febslet.2005.01.009 1:CAS:528:DC%2BD2MXhtlOnsrY%3D (Pubitemid 40253549)
    • (2005) FEBS Letters , vol.579 , Issue.5 , pp. 1101-1108
    • Zi, Z.1    Cho, K.-H.2    Sung, M.-H.3    Xia, X.4    Zheng, J.5    Sun, Z.6
  • 15
    • 3042702377 scopus 로고    scopus 로고
    • Optimal sampling time selection for parameter estimation in dynamic pathway modeling
    • DOI 10.1016/j.biosystems.2004.03.007, PII S0303264704000395
    • Z. Kutalik K. H. Cho O. Wolkenhauer 2004 Optimal sampling time selection for parameter estimation in dynamic pathway modeling Biosystems 75 43 55 10.1016/j.biosystems.2004.03.007 (Pubitemid 38887550)
    • (2004) BioSystems , vol.75 , Issue.1-3 , pp. 43-55
    • Kutalik, Z.1    Cho, K.-H.2    Wolkenhauer, O.3
  • 16
    • 32044474451 scopus 로고    scopus 로고
    • A hybrid approach for efficient and robust parameter estimation in biochemical pathways
    • DOI 10.1016/j.biosystems.2005.06.016, PII S0303264705001334
    • F. M. Rodriguez P. Mendes J. R. Banga 2006 A hybrid approach for efficient and robust parameter estimation in biochemical pathways Biosystems 83 248 265 10.1016/j.biosystems.2005.06.016 (Pubitemid 43199824)
    • (2006) BioSystems , vol.83 , Issue.SPEC. ISS. , pp. 248-265
    • Rodriguez-Fernandez, M.1    Mendes, P.2    Banga, J.R.3
  • 17
    • 30944465851 scopus 로고    scopus 로고
    • Quenching of microbial samples for increased reliability of microarray data
    • DOI 10.1016/j.mimet.2005.04.035, PII S0167701205001417
    • B. Pieterse R. H. Jellema M. J. Werf 2006 Quenching of microbial samples for increased reliability of microarray data J. Microbiol. Meth. 64 207 216 10.1016/j.mimet.2005.04.035 1:CAS:528:DC%2BD28XlvVKntQ%3D%3D (Pubitemid 43112119)
    • (2006) Journal of Microbiological Methods , vol.64 , Issue.2 , pp. 207-216
    • Pieterse, B.1    Jellema, R.H.2    Van Der Werf, M.J.3
  • 18
    • 42349111860 scopus 로고    scopus 로고
    • Global metabolic profiling of Escherichia coli cultures: An evaluation of methods for quenching and extraction of intracellular metabolites
    • DOI 10.1021/ac7023409
    • C. L. Winder W. B. Dunn S. Schuler D. Broadhurst R. Jarvis G. M. Stephens R. Goodacre 2008 Global metabolic profiling of Escherichia coli cultures: An evaluation of methods for quenching and extraction of intracellular metabolites Anal. Chem. 80 2939 2948 10.1021/ac7023409 1:CAS:528:DC%2BD1cXjtVSiu7o%3D (Pubitemid 351556459)
    • (2008) Analytical Chemistry , vol.80 , Issue.8 , pp. 2939-2948
    • Winder, C.L.1    Dunn, W.B.2    Schuler, S.3    Broadhurst, D.4    Jarvis, R.5    Stephens, G.M.6    Goodacre, R.7
  • 19
    • 33845410054 scopus 로고    scopus 로고
    • Dynamic modelling and analysis of biochemical networks: Mechanism-based models and model-based experiments
    • DOI 10.1093/bib/bbl040
    • A. W. Natal 2006 Dynamic modeling and analysis of biochemical networks: Mechanism-based models and model-based experiments Brief. Bioinfo. 7 364 374 10.1093/bib/bbl040 (Pubitemid 44896739)
    • (2006) Briefings in Bioinformatics , vol.7 , Issue.4 , pp. 364-374
    • Van Riel, N.A.W.1
  • 20
    • 0018170081 scopus 로고
    • Biosynthesis in Escherichia coli of sn-glycerol 3-phosphate, a precursor of phospholipid
    • 1:CAS:528:DyaE1cXlvFeju7s%3D
    • J. R. Edgar R. M. Bell 1978 Biosynthesis in Escherichia coli of sn-glycerol 3-phosphate, a precursor of phospholipid J. Biol. Chem. 253 6354 6363 1:CAS:528:DyaE1cXlvFeju7s%3D
    • (1978) J. Biol. Chem. , vol.253 , pp. 6354-6363
    • Edgar, J.R.1    Bell, R.M.2
  • 21
    • 3342979480 scopus 로고    scopus 로고
    • Saccharomyces cerevisiae phosphoenolpyruvate carboxykinase: Relevance of arginine 70 for catalysis
    • DOI 10.1016/j.biochi.2004.06.001, PII S030090840400080X
    • M. C. Ravanal M. Flores E. Pérez F. Aroca E. Cardemil 2004 Saccharomyces cerevisiae phosphoenolpyruvate carboxykinase: Relevance of arginine 70 for catalysis Biochimie. 86 357 362 10.1016/j.biochi.2004.06.001 (Pubitemid 38993238)
    • (2004) Biochimie , vol.86 , Issue.6 , pp. 357-362
    • Cristina Ravanal, M.1    Flores, M.2    Perez, E.3    Aroca, F.4    Cardemil, E.5
  • 22
    • 0016768876 scopus 로고
    • The tryptophan synthase from Escherichia coli
    • 10.1111/j.1432-1033.1975.tb21030.x 1:CAS:528:DyaE28XlsFOrsQ%3D%3D
    • K. Kirschner R. L. Wiskocil M. Foehn L. Rezeau 1975 The tryptophan synthase from Escherichia coli Eur. J. Biochem. 60 513 523 10.1111/j.1432-1033. 1975.tb21030.x 1:CAS:528:DyaE28XlsFOrsQ%3D%3D
    • (1975) Eur. J. Biochem. , vol.60 , pp. 513-523
    • Kirschner, K.1    Wiskocil, R.L.2    Foehn, M.3    Rezeau, L.4
  • 23
    • 29344456431 scopus 로고    scopus 로고
    • Identification of amino acid residues contributing to the mechanism of cooperativity in Escherichia coli D-3-phosphoglycerate dehydrogenase
    • DOI 10.1021/bi051681j
    • G. A. Grant Z. Hu X. L. Xu 2005 Identification of amino acid residues contributing to the mechanism of cooperativity in Escherichia coli D-3-phosphoglycerate dehydrogenase Biochem. 44 16844 16852 10.1021/bi051681j 1:CAS:528:DC%2BD2MXht1Gms7%2FP (Pubitemid 43007213)
    • (2005) Biochemistry , vol.44 , Issue.51 , pp. 16844-16852
    • Grant, G.A.1    Hu, Z.2    Xu, X.L.3
  • 25
    • 0016424514 scopus 로고
    • Regulation of the amount and of the activity of phosphofructokinase and pyruvate kinase in Escherichia coli
    • 1:CAS:528:DyaE2MXht1Wnsbk%3D
    • D. Kotlarz H. Garreau H. Buc 1975 Regulation of the amount and of the activity of phosphofructokinase and pyruvate kinase in Escherichia coli Biochim. Biophys.Acta. 381 257 268 1:CAS:528:DyaE2MXht1Wnsbk%3D
    • (1975) Biochim. Biophys.Acta. , vol.381 , pp. 257-268
    • Kotlarz, D.1    Garreau, H.2    Buc, H.3


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