메뉴 건너뛰기




Volumn 6, Issue 5, 2011, Pages

Cross-mapping events in miRNAs reveal potential miRNA-Mimics and evolutionary implications

Author keywords

[No Author keywords available]

Indexed keywords

MICRORNA; MICRORNA PRECURSOR; UNCLASSIFIED DRUG; UNTRANSLATED RNA; RNA PRECURSOR;

EID: 79957561785     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0020517     Document Type: Article
Times cited : (30)

References (36)
  • 1
    • 77954386364 scopus 로고    scopus 로고
    • MicroRNAs: potential biomarkers for cancer diagnosis, prognosis and targets for therapy
    • Cho WC, (2010) MicroRNAs: potential biomarkers for cancer diagnosis, prognosis and targets for therapy. International Journal of Biochemistry & Cell Biology 42: 1273-1281.
    • (2010) International Journal of Biochemistry & Cell Biology , vol.42 , pp. 1273-1281
    • Cho, W.C.1
  • 2
    • 77957052771 scopus 로고    scopus 로고
    • Circulating microRNAs as potential biomarkers of coronary artery disease: a promise to be fulfilled?
    • Contu R, Latronico MV, Condorelli G, (2010) Circulating microRNAs as potential biomarkers of coronary artery disease: a promise to be fulfilled? Circulation Research 107: 573-574.
    • (2010) Circulation Research , vol.107 , pp. 573-574
    • Contu, R.1    Latronico, M.V.2    Condorelli, G.3
  • 3
    • 78049346482 scopus 로고    scopus 로고
    • MicroRNA dysregulation in gastric cancer: a new player enters the game
    • Wu WK, Lee CW, Cho CH, Fan D, Wu K, et al. (2010) MicroRNA dysregulation in gastric cancer: a new player enters the game. Oncogene 29: 5761-5771.
    • (2010) Oncogene , vol.29 , pp. 5761-5771
    • Wu, W.K.1    Lee, C.W.2    Cho, C.H.3    Fan, D.4    Wu, K.5
  • 5
    • 77956409605 scopus 로고    scopus 로고
    • MicroRNA expression and its implication for the diagnosis and therapeutic strategies of gastric cancer
    • Wang J, Wang Q, Liu H, Hu B, Zhou W, et al. (2010) MicroRNA expression and its implication for the diagnosis and therapeutic strategies of gastric cancer. Cancer Letters 297: 137-143.
    • (2010) Cancer Letters , vol.297 , pp. 137-143
    • Wang, J.1    Wang, Q.2    Liu, H.3    Hu, B.4    Zhou, W.5
  • 7
    • 58449134534 scopus 로고    scopus 로고
    • Small silencing RNAs: an expanding universe
    • Ghildiyal M, Zamore PD, (2009) Small silencing RNAs: an expanding universe. Nature Reviews Genetics 10: 94-108.
    • (2009) Nature Reviews Genetics , vol.10 , pp. 94-108
    • Ghildiyal, M.1    Zamore, P.D.2
  • 8
    • 33746274670 scopus 로고    scopus 로고
    • Comprehensive thermodynamic analysis of 3′ double-nucleotide overhangs neighboring Watson-Crick terminal base pairs
    • O'Toole AS, Miller S, Haines N, Zink MC, Serra MJ, (2006) Comprehensive thermodynamic analysis of 3′ double-nucleotide overhangs neighboring Watson-Crick terminal base pairs. Nucleic Acids Research 34: 3338-3344.
    • (2006) Nucleic Acids Research , vol.34 , pp. 3338-3344
    • O'Toole, A.S.1    Miller, S.2    Haines, N.3    Zink, M.C.4    Serra, M.J.5
  • 9
    • 41649089309 scopus 로고    scopus 로고
    • The regulatory activity of microRNA star species has substantial influence on microRNA and 3′ UTR evolution
    • Okamura K, Phillips MD, Tyler DM, Duan H, Chou YT, et al. (2008) The regulatory activity of microRNA star species has substantial influence on microRNA and 3′ UTR evolution. Nature Structural & Molecular Biology 15: 354-363.
    • (2008) Nature Structural & Molecular Biology , vol.15 , pp. 354-363
    • Okamura, K.1    Phillips, M.D.2    Tyler, D.M.3    Duan, H.4    Chou, Y.T.5
  • 11
    • 77349092849 scopus 로고    scopus 로고
    • Deep sequencing of small RNA libraries reveals dynamic regulation of conserved and novel microRNAs and microRNA-stars during silkworm development
    • Jagadeeswaran G, Zheng Y, Sumathipala N, Jiang HB, Arrese EL, et al. (2010) Deep sequencing of small RNA libraries reveals dynamic regulation of conserved and novel microRNAs and microRNA-stars during silkworm development. BMC Genomics 11: 52.
    • (2010) BMC Genomics , vol.11 , pp. 52
    • Jagadeeswaran, G.1    Zheng, Y.2    Sumathipala, N.3    Jiang, H.B.4    Arrese, E.L.5
  • 12
    • 77955328547 scopus 로고    scopus 로고
    • The fate of miRNA* strand through evolutionary analysis: implication for degradation as merely carrier strand or potential regulatory molecule?
    • Guo L, Lu Z, (2010) The fate of miRNA* strand through evolutionary analysis: implication for degradation as merely carrier strand or potential regulatory molecule? PLoS ONE 5: e11387.
    • (2010) PLoS ONE , vol.5
    • Guo, L.1    Lu, Z.2
  • 14
    • 70449122099 scopus 로고    scopus 로고
    • Distinct mechanisms for microRNA strand selection by Drosophila Argonautes
    • Okamura K, Liu N, Lai EC, (2009) Distinct mechanisms for microRNA strand selection by Drosophila Argonautes. Molecular Cell 36: 431-444.
    • (2009) Molecular Cell , vol.36 , pp. 431-444
    • Okamura, K.1    Liu, N.2    Lai, E.C.3
  • 15
    • 56949098027 scopus 로고    scopus 로고
    • Functional genetic variation of human miRNAs and phenotypic consequences
    • Borel C, Antonarakis SE, (2008) Functional genetic variation of human miRNAs and phenotypic consequences. Mammalian Genome 19: 503-509.
    • (2008) Mammalian Genome , vol.19 , pp. 503-509
    • Borel, C.1    Antonarakis, S.E.2
  • 16
    • 55549129277 scopus 로고    scopus 로고
    • In-depth characterization of the microRNA transcriptome in a leukemia progression model
    • Kuchenbauer F, Morin RD, Argiropoulos B, Petriv OI, Griffith M, et al. (2008) In-depth characterization of the microRNA transcriptome in a leukemia progression model. Genome Research 18: 1787-1797.
    • (2008) Genome Research , vol.18 , pp. 1787-1797
    • Kuchenbauer, F.1    Morin, R.D.2    Argiropoulos, B.3    Petriv, O.I.4    Griffith, M.5
  • 17
    • 41649106136 scopus 로고    scopus 로고
    • Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells
    • Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, et al. (2008) Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells. Genome Research 18: 610-621.
    • (2008) Genome Research , vol.18 , pp. 610-621
    • Morin, R.D.1    O'Connor, M.D.2    Griffith, M.3    Kuchenbauer, F.4    Delaney, A.5
  • 18
    • 33845436047 scopus 로고    scopus 로고
    • Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C-elegans
    • Ruby JG, Jan C, Player C, Axtell MJ, Lee W, et al. (2006) Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C-elegans. Cell 127: 1193-1207.
    • (2006) Cell , vol.127 , pp. 1193-1207
    • Ruby, J.G.1    Jan, C.2    Player, C.3    Axtell, M.J.4    Lee, W.5
  • 20
    • 75649089335 scopus 로고    scopus 로고
    • Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries
    • de Hoon MJL, Taft RJ, Hashimoto T, Kanamori-Katayama M, Kawaji H, et al. (2010) Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries. Genome Research 20: 257-264.
    • (2010) Genome Research , vol.20 , pp. 257-264
    • de Hoon, M.J.L.1    Taft, R.J.2    Hashimoto, T.3    Kanamori-Katayama, M.4    Kawaji, H.5
  • 21
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs genomics, biogenesis, mechanism, and function
    • Bartel DP, (2004) MicroRNAs genomics, biogenesis, mechanism, and function. Cell 116: 281-297.
    • (2004) Cell , vol.116 , pp. 281-297
    • Bartel, D.P.1
  • 22
    • 77955422438 scopus 로고    scopus 로고
    • Global expression analysis of miRNA gene cluster and family based on isomiRs from deep sequencing data
    • Guo L, Lu Z, (2010) Global expression analysis of miRNA gene cluster and family based on isomiRs from deep sequencing data. Computational Biology and Chemistry 34: 165-171.
    • (2010) Computational Biology and Chemistry , vol.34 , pp. 165-171
    • Guo, L.1    Lu, Z.2
  • 23
    • 79953753919 scopus 로고    scopus 로고
    • A comprehensive study of multiple mapping and feature selection for correction strategy in the analysis of small RNAs from SOLiD sequencing
    • Guo L, Liang T, Lu Z, (2011) A comprehensive study of multiple mapping and feature selection for correction strategy in the analysis of small RNAs from SOLiD sequencing. BioSystems 104: 87-93.
    • (2011) BioSystems , vol.104 , pp. 87-93
    • Guo, L.1    Liang, T.2    Lu, Z.3
  • 24
    • 54349104464 scopus 로고    scopus 로고
    • Mouse ES cells express endogenous shRNAs, siRNAs, and other Microprocessor-independent, Dicer-dependent small RNAs
    • Babiarz JE, Ruby JG, Wang Y, Bartel DP, Blelloch R, (2008) Mouse ES cells express endogenous shRNAs, siRNAs, and other Microprocessor-independent, Dicer-dependent small RNAs. Genes & Development 22: 2773-2785.
    • (2008) Genes & Development , vol.22 , pp. 2773-2785
    • Babiarz, J.E.1    Ruby, J.G.2    Wang, Y.3    Bartel, D.P.4    Blelloch, R.5
  • 27
    • 34547596338 scopus 로고    scopus 로고
    • MiPred: classification of real and pseudo microRNA precursors using random forest prediction model with combined features
    • Jiang P, Wu H, Wang W, Ma W, Sun X, et al. (2007) MiPred: classification of real and pseudo microRNA precursors using random forest prediction model with combined features. Nucleic Acids Research 35: W339-W344.
    • (2007) Nucleic Acids Research , vol.35
    • Jiang, P.1    Wu, H.2    Wang, W.3    Ma, W.4    Sun, X.5
  • 30
    • 33750814968 scopus 로고    scopus 로고
    • Antisense transcription controls cell fate in Saccharomyces cerevisiae
    • Hongay CF, Grisafi PL, Galitski T, Fink GR, (2006) Antisense transcription controls cell fate in Saccharomyces cerevisiae. Cell 127: 735-745.
    • (2006) Cell , vol.127 , pp. 735-745
    • Hongay, C.F.1    Grisafi, P.L.2    Galitski, T.3    Fink, G.R.4
  • 31
    • 38149026919 scopus 로고    scopus 로고
    • A single Hox locus in Drosophila produces functional microRNAs from opposite DNA strands
    • Stark A, Bushati N, Jan CH, Kheradpour P, Hodges E, et al. (2008) A single Hox locus in Drosophila produces functional microRNAs from opposite DNA strands. Genes & Development 22: 8-13.
    • (2008) Genes & Development , vol.22 , pp. 8-13
    • Stark, A.1    Bushati, N.2    Jan, C.H.3    Kheradpour, P.4    Hodges, E.5
  • 32
    • 0035955374 scopus 로고    scopus 로고
    • Identification of novel genes coding for small expressed RNAs
    • Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T, (2001) Identification of novel genes coding for small expressed RNAs. Science 294: 853-858.
    • (2001) Science , vol.294 , pp. 853-858
    • Lagos-Quintana, M.1    Rauhut, R.2    Lendeckel, W.3    Tuschl, T.4
  • 33
    • 0035955361 scopus 로고    scopus 로고
    • An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
    • Lau NC, Lim LP, Weinstein EG, Bartel DP, (2001) An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans. Science 294: 858-862.
    • (2001) Science , vol.294 , pp. 858-862
    • Lau, N.C.1    Lim, L.P.2    Weinstein, E.G.3    Bartel, D.P.4
  • 34
    • 0035955366 scopus 로고    scopus 로고
    • An extensive class of small RNAs in Caenorhabditis elegans
    • Lee RC, Ambros V, (2001) An extensive class of small RNAs in Caenorhabditis elegans. Science 294: 862-864.
    • (2001) Science , vol.294 , pp. 862-864
    • Lee, R.C.1    Ambros, V.2
  • 35
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead B, Trapnell C, Pop M, Salzberg SL, (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biology 10: R25.
    • (2009) Genome Biology , vol.10
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.