-
1
-
-
35748974830
-
Occurrence, classification, and biological function of hydrogenases: an overview
-
10.1021/cr050196r, 17927159
-
Vignais PM, Billoud B. Occurrence, classification, and biological function of hydrogenases: an overview. Chem Rev 2007, 107:4206-4272. 10.1021/cr050196r, 17927159.
-
(2007)
Chem Rev
, vol.107
, pp. 4206-4272
-
-
Vignais, P.M.1
Billoud, B.2
-
2
-
-
72749124901
-
Solar energy conversion in a photoelectrochemical biofuel cell
-
Hambourger M, Kodis G, Vaughn MD, Moore GF, Gust D, Moore AL, Moore TA. Solar energy conversion in a photoelectrochemical biofuel cell. Dalton Trans 2009, 9979-9989.
-
(2009)
Dalton Trans
, pp. 9979-9989
-
-
Hambourger, M.1
Kodis, G.2
Vaughn, M.D.3
Moore, G.F.4
Gust, D.5
Moore, A.L.6
Moore, T.A.7
-
3
-
-
53449100202
-
Raman spectroscopy of charge transfer interactions between single wall carbon nanotubes and [FeFe] hydrogenase
-
Blackburn JL, Svedruzic D, Mcdonald TJ, Kim Y, King PW, Heben MJ. Raman spectroscopy of charge transfer interactions between single wall carbon nanotubes and [FeFe] hydrogenase. Dalton Trans 2008, 5454-5461.
-
(2008)
Dalton Trans
, pp. 5454-5461
-
-
Blackburn, J.L.1
Svedruzic, D.2
Mcdonald, T.J.3
Kim, Y.4
King, P.W.5
Heben, M.J.6
-
4
-
-
73249146231
-
Visible light-driven H(2) production by hydrogenases attached to dye-sensitized TiO(2) nanoparticles
-
10.1021/ja907923r, 19928857
-
Reisner E, Powell DJ, Cavazza C, Fontecilla-Camps JC, Armstrong FA. Visible light-driven H(2) production by hydrogenases attached to dye-sensitized TiO(2) nanoparticles. J Am Chem Soc 2009, 131:18457-18466. 10.1021/ja907923r, 19928857.
-
(2009)
J Am Chem Soc
, vol.131
, pp. 18457-18466
-
-
Reisner, E.1
Powell, D.J.2
Cavazza, C.3
Fontecilla-Camps, J.C.4
Armstrong, F.A.5
-
5
-
-
0001563799
-
Hydrogen Evolution by a Chloroplast-Ferredoxin-Hydrogenase System
-
10.1073/pnas.70.8.2317, 433726, 16592104
-
Benemann JR, Berenson JA, Kaplan NO, Kamen MD. Hydrogen Evolution by a Chloroplast-Ferredoxin-Hydrogenase System. Proc Natl Acad Sci USA 1973, 70:2317-2320. 10.1073/pnas.70.8.2317, 433726, 16592104.
-
(1973)
Proc Natl Acad Sci USA
, vol.70
, pp. 2317-2320
-
-
Benemann, J.R.1
Berenson, J.A.2
Kaplan, N.O.3
Kamen, M.D.4
-
6
-
-
33745844815
-
Light-driven hydrogen production by a hybrid complex of a [NiFe]-hydrogenase and the cyanobacterial photosystem I
-
10.1562/2006-01-16-RA-778, 16542111
-
Ihara M, Nishihara H, Yoon K, Lenz O, Friedrich B, Nakamoto H, Kojima K, Honma D, Kamachi T, Okura I. Light-driven hydrogen production by a hybrid complex of a [NiFe]-hydrogenase and the cyanobacterial photosystem I. Photochem Photobiol 2006, 82:676-682. 10.1562/2006-01-16-RA-778, 16542111.
-
(2006)
Photochem Photobiol
, vol.82
, pp. 676-682
-
-
Ihara, M.1
Nishihara, H.2
Yoon, K.3
Lenz, O.4
Friedrich, B.5
Nakamoto, H.6
Kojima, K.7
Honma, D.8
Kamachi, T.9
Okura, I.10
-
7
-
-
77953200590
-
The surprising diversity of clostridial hydrogenases: a comparative genomic perspective
-
10.1099/mic.0.032771-0, 20395274
-
Calusinska M, Happe T, Joris B, Wilmotte A. The surprising diversity of clostridial hydrogenases: a comparative genomic perspective. Microbiology 2010, 156:1575-1588. 10.1099/mic.0.032771-0, 20395274.
-
(2010)
Microbiology
, vol.156
, pp. 1575-1588
-
-
Calusinska, M.1
Happe, T.2
Joris, B.3
Wilmotte, A.4
-
8
-
-
14644393653
-
Identification of genes required for hydrogenase activity in Chlamydomonas reinhardtii
-
10.1042/BST0330102, 15667277
-
Posewitz M, King P, Smolinski S, Smith R, Ginley A, Ghirardi M, Seibert M. Identification of genes required for hydrogenase activity in Chlamydomonas reinhardtii. Biochem Soc Trans 2005, 33:102-104. 10.1042/BST0330102, 15667277.
-
(2005)
Biochem Soc Trans
, vol.33
, pp. 102-104
-
-
Posewitz, M.1
King, P.2
Smolinski, S.3
Smith, R.4
Ginley, A.5
Ghirardi, M.6
Seibert, M.7
-
9
-
-
33644850541
-
Functional studies of [FeFe] hydrogenase maturation in an Escherichia coli biosynthetic system
-
10.1128/JB.188.6.2163-2172.2006, 1428129, 16513746
-
King PW, Posewitz MC, Ghirardi ML, Seibert M. Functional studies of [FeFe] hydrogenase maturation in an Escherichia coli biosynthetic system. J Bacteriol 2006, 188:2163-2172. 10.1128/JB.188.6.2163-2172.2006, 1428129, 16513746.
-
(2006)
J Bacteriol
, vol.188
, pp. 2163-2172
-
-
King, P.W.1
Posewitz, M.C.2
Ghirardi, M.L.3
Seibert, M.4
-
10
-
-
67650778207
-
Engineering Microorganisms for Energy Production
-
Washington DC: Department of Energy
-
Brenner MP, Bildsten L, Dyson F, Fortson N, Garwin R, Grober R, Hemley R, Joyce G, Katz J. Engineering Microorganisms for Energy Production. 2006, Washington DC: Department of Energy.
-
(2006)
-
-
Brenner, M.P.1
Bildsten, L.2
Dyson, F.3
Fortson, N.4
Garwin, R.5
Grober, R.6
Hemley, R.7
Joyce, G.8
Katz, J.9
-
11
-
-
76149104243
-
Dynamic electrochemical experiments on hydrogenases
-
10.1007/s11120-009-9428-0, 19455401
-
Armstrong FA. Dynamic electrochemical experiments on hydrogenases. Photosynth Res 2009, 102:541-550. 10.1007/s11120-009-9428-0, 19455401.
-
(2009)
Photosynth Res
, vol.102
, pp. 541-550
-
-
Armstrong, F.A.1
-
12
-
-
0036275140
-
Characterization of the oxygen tolerance of a hydrogenase linked to a carbon monoxide oxidation pathway in Rubrivivax gelatinosus
-
10.1128/AEM.68.6.2633-2636.2002, 123975, 12039713
-
Maness P, Smolinski S, Dillon A, Heben M, Weaver P. Characterization of the oxygen tolerance of a hydrogenase linked to a carbon monoxide oxidation pathway in Rubrivivax gelatinosus. Appl Environ Microbiol 2002, 68:2633. 10.1128/AEM.68.6.2633-2636.2002, 123975, 12039713.
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 2633
-
-
Maness, P.1
Smolinski, S.2
Dillon, A.3
Heben, M.4
Weaver, P.5
-
13
-
-
0017903788
-
The properties of hydrogenase from Thiocapsa roseopersicina
-
Gogotov I, Zorin N, Serebriakova L, Kondratieva E. The properties of hydrogenase from Thiocapsa roseopersicina. Biochimica et Biophysica Acta (BBA)-Enzymology 1978, 523:335-343.
-
(1978)
Biochimica et Biophysica Acta (BBA)-Enzymology
, vol.523
, pp. 335-343
-
-
Gogotov, I.1
Zorin, N.2
Serebriakova, L.3
Kondratieva, E.4
-
14
-
-
0036827192
-
Hydrogenases, accessory genes and the regulation of [NiFe] hydrogenase biosynthesis in Thiocapsa roseopersicina
-
Kovács K, Fodor B, Kovács T, Csanádi G, Maróti G, Balogh J, Arvani S, Rákhely G. Hydrogenases, accessory genes and the regulation of [NiFe] hydrogenase biosynthesis in Thiocapsa roseopersicina. International Journal of Hydrogen Energy 2002, 27:1463-1469.
-
(2002)
International Journal of Hydrogen Energy
, vol.27
, pp. 1463-1469
-
-
Kovács, K.1
Fodor, B.2
Kovács, T.3
Csanádi, G.4
Maróti, G.5
Balogh, J.6
Arvani, S.7
Rákhely, G.8
-
15
-
-
33744503148
-
[NiFe]-hydrogenases of Ralstonia eutropha H16: modular enzymes for oxygen-tolerant biological hydrogen oxidation
-
10.1159/000091564, 16645314
-
Burgdorf T, Lenz O, Buhrke T, van der Linden E, Jones A, Albracht S, Friedrich B. [NiFe]-hydrogenases of Ralstonia eutropha H16: modular enzymes for oxygen-tolerant biological hydrogen oxidation. J Mol Microbiol Biotechnol 2005, 10:181-196. 10.1159/000091564, 16645314.
-
(2005)
J Mol Microbiol Biotechnol
, vol.10
, pp. 181-196
-
-
Burgdorf, T.1
Lenz, O.2
Buhrke, T.3
van der Linden, E.4
Jones, A.5
Albracht, S.6
Friedrich, B.7
-
16
-
-
53549119985
-
The Difference a Se Makes? Oxygen-Tolerant Hydrogen Production by the [NiFeSe]-Hydrogenase from Desulfomicrobium baculatum
-
10.1021/ja803657d, 18781742
-
Parkin A, Goldet G, Cavazza C, Fontecilla-Camps JC, Armstrong FA. The Difference a Se Makes? Oxygen-Tolerant Hydrogen Production by the [NiFeSe]-Hydrogenase from Desulfomicrobium baculatum. J Am Chem Soc 2008, 130:13410-13416. 10.1021/ja803657d, 18781742.
-
(2008)
J Am Chem Soc
, vol.130
, pp. 13410-13416
-
-
Parkin, A.1
Goldet, G.2
Cavazza, C.3
Fontecilla-Camps, J.C.4
Armstrong, F.A.5
-
17
-
-
34250902424
-
Hydrogenases and hydrogen photoproduction in oxygenic photosynthetic organisms
-
10.1146/annurev.arplant.58.032806.103848, 17150028
-
Ghirardi ML, Posewitz MC, Maness P, Dubini A, Yu J, Seibert M. Hydrogenases and hydrogen photoproduction in oxygenic photosynthetic organisms. Annual review of plant biology 2007, 58:71-91. 10.1146/annurev.arplant.58.032806.103848, 17150028.
-
(2007)
Annual review of plant biology
, vol.58
, pp. 71-91
-
-
Ghirardi, M.L.1
Posewitz, M.C.2
Maness, P.3
Dubini, A.4
Yu, J.5
Seibert, M.6
-
18
-
-
0036523377
-
Hydrogenases: hydrogen-activating enzymes
-
10.1002/1439-7633(20020301)3:2/3<153::AID-CBIC153>3.0.CO;2-B, 11921392
-
Frey M. Hydrogenases: hydrogen-activating enzymes. Chembiochem 2002, 3:153-160. 10.1002/1439-7633(20020301)3:2/3<153::AID-CBIC153>3.0.CO;2-B, 11921392.
-
(2002)
Chembiochem
, vol.3
, pp. 153-160
-
-
Frey, M.1
-
19
-
-
77956281768
-
Heterologous Expression and Maturation of an NADP-Dependent [NiFe]-Hydrogenase: A Key Enzyme in Biofuel Production
-
10.1371/journal.pone.0010526, 2865534, 20463892
-
Sun J, Hopkins RC, Jenney FE, Mcternan PM, Adams MWW. Heterologous Expression and Maturation of an NADP-Dependent [NiFe]-Hydrogenase: A Key Enzyme in Biofuel Production. PLoS ONE 2010, 5:e10526. 10.1371/journal.pone.0010526, 2865534, 20463892.
-
(2010)
PLoS ONE
, vol.5
-
-
Sun, J.1
Hopkins, R.C.2
Jenney, F.E.3
Mcternan, P.M.4
Adams, M.W.W.5
-
20
-
-
41949131441
-
Hydrogen-activating enzymes: activity does not correlate with oxygen sensitivity
-
10.1002/anie.200704313, 18246563
-
Baffert C, Demuez M, Cournac L, Burlat B, Guigliarelli B, Bertrand P, Girbal L, Léger C. Hydrogen-activating enzymes: activity does not correlate with oxygen sensitivity. Angew Chem Int Ed Engl 2008, 47:2052-2054. 10.1002/anie.200704313, 18246563.
-
(2008)
Angew Chem Int Ed Engl
, vol.47
, pp. 2052-2054
-
-
Baffert, C.1
Demuez, M.2
Cournac, L.3
Burlat, B.4
Guigliarelli, B.5
Bertrand, P.6
Girbal, L.7
Léger, C.8
-
21
-
-
0021256680
-
Regulation by molecular oxygen and organic substrates of hydrogenase synthesis in Alcaligenes eutrophus
-
215604, 6376469
-
Cangelosi GA, Wheelis ML. Regulation by molecular oxygen and organic substrates of hydrogenase synthesis in Alcaligenes eutrophus. J Bacteriol 1984, 159:138-144. 215604, 6376469.
-
(1984)
J Bacteriol
, vol.159
, pp. 138-144
-
-
Cangelosi, G.A.1
Wheelis, M.L.2
-
22
-
-
0034082075
-
The bidirectional hydrogenase of Synechocystis sp. PCC 6803 works as an electron valve during photosynthesis
-
10.1007/s002030000139, 10896211
-
Appel J, Phunpruch S, Steinmüller K, Schulz R. The bidirectional hydrogenase of Synechocystis sp. PCC 6803 works as an electron valve during photosynthesis. Arch Microbiol 2000, 173:333-338. 10.1007/s002030000139, 10896211.
-
(2000)
Arch Microbiol
, vol.173
, pp. 333-338
-
-
Appel, J.1
Phunpruch, S.2
Steinmüller, K.3
Schulz, R.4
-
23
-
-
21244441201
-
Oxygen tolerance of the H2-sensing [NiFe] hydrogenase from Ralstonia eutropha H16 is based on limited access of oxygen to the active site
-
10.1074/jbc.M503260200, 15849358
-
Buhrke T, Lenz O, Krauss N, Friedrich B. Oxygen tolerance of the H2-sensing [NiFe] hydrogenase from Ralstonia eutropha H16 is based on limited access of oxygen to the active site. J Biol Chem 2005, 280:23791-23796. 10.1074/jbc.M503260200, 15849358.
-
(2005)
J Biol Chem
, vol.280
, pp. 23791-23796
-
-
Buhrke, T.1
Lenz, O.2
Krauss, N.3
Friedrich, B.4
-
24
-
-
67651211347
-
Introduction of methionines in the gas channel makes [NiFe] hydrogenase aero-tolerant
-
10.1021/ja9018258, 19580279
-
Dementin S, Leroux F, Cournac L, de Lacey AL, Volbeda A, Léger C, Burlat B, Martinez N, Champ S, Martin L, Sanganas O, Haumann M, Fernandez VM, Guigliarelli B, Fontecilla-Camps JC, Rousset M. Introduction of methionines in the gas channel makes [NiFe] hydrogenase aero-tolerant. J Am Chem Soc 2009, 131:10156-10164. 10.1021/ja9018258, 19580279.
-
(2009)
J Am Chem Soc
, vol.131
, pp. 10156-10164
-
-
Dementin, S.1
Leroux, F.2
Cournac, L.3
de Lacey, A.L.4
Volbeda, A.5
Léger, C.6
Burlat, B.7
Martinez, N.8
Champ, S.9
Martin, L.10
Sanganas, O.11
Haumann, M.12
Fernandez, V.M.13
Guigliarelli, B.14
Fontecilla-Camps, J.C.15
Rousset, M.16
-
25
-
-
68149112644
-
Theoretical study of dioxygen induced inhibition of [FeFe]-hydrogenase
-
10.1021/ic9002127, 19580299
-
Stiebritz MT, Reiher M. Theoretical study of dioxygen induced inhibition of [FeFe]-hydrogenase. Inorg Chem 2009, 48:7127-7140. 10.1021/ic9002127, 19580299.
-
(2009)
Inorg Chem
, vol.48
, pp. 7127-7140
-
-
Stiebritz, M.T.1
Reiher, M.2
-
26
-
-
70350469059
-
How oxygen attacks [FeFe] hydrogenases from photosynthetic organisms
-
10.1073/pnas.0905343106, 2765078, 19805068
-
Stripp ST, Goldet G, Brandmayr C, Sanganas O, Vincent KA, Haumann M, Armstrong FA, Happe T. How oxygen attacks [FeFe] hydrogenases from photosynthetic organisms. Proc Natl Acad Sci USA 2009, 106:17331-17336. 10.1073/pnas.0905343106, 2765078, 19805068.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 17331-17336
-
-
Stripp, S.T.1
Goldet, G.2
Brandmayr, C.3
Sanganas, O.4
Vincent, K.A.5
Haumann, M.6
Armstrong, F.A.7
Happe, T.8
-
27
-
-
0001270261
-
Design by directed evolution
-
Arnold FH. Design by directed evolution. Acc Chem Res 1998, 31:125-131.
-
(1998)
Acc Chem Res
, vol.31
, pp. 125-131
-
-
Arnold, F.H.1
-
28
-
-
65249177164
-
Directed enzyme evolution: climbing fitness peaks one amino acid at a time
-
10.1016/j.cbpa.2009.01.017, 2703427, 19249235
-
Tracewell CA, Arnold FH. Directed enzyme evolution: climbing fitness peaks one amino acid at a time. Curr Opin Chem Biol 2009, 13:3-9. 10.1016/j.cbpa.2009.01.017, 2703427, 19249235.
-
(2009)
Curr Opin Chem Biol
, vol.13
, pp. 3-9
-
-
Tracewell, C.A.1
Arnold, F.H.2
-
29
-
-
77956418571
-
A cell-free microtiter plate screen for improved [FeFe] hydrogenases
-
10.1371/journal.pone.0010554, 2866662, 20479937
-
Stapleton JA, Swartz JR. A cell-free microtiter plate screen for improved [FeFe] hydrogenases. PLoS ONE 2010, 5:e10554. 10.1371/journal.pone.0010554, 2866662, 20479937.
-
(2010)
PLoS ONE
, vol.5
-
-
Stapleton, J.A.1
Swartz, J.R.2
-
30
-
-
84859763855
-
A New Biobrick Assembly Strategy Designed for Facile Protein Engineering
-
Phillips I, Silver PA. A New Biobrick Assembly Strategy Designed for Facile Protein Engineering. 2006, 1-6., http://hdl.handle.net/1721.1/32535
-
(2006)
, pp. 1-6
-
-
Phillips, I.1
Silver, P.A.2
-
31
-
-
33847310467
-
Application of gene-shuffling for the rapid generation of novel [FeFe]-hydrogenase libraries
-
10.1007/s10529-006-9254-9, 17195059
-
Nagy LE, Meuser JE, Plummer S, Seibert M, Ghirardi ML, King PW, Ahmann D, Posewitz MC. Application of gene-shuffling for the rapid generation of novel [FeFe]-hydrogenase libraries. Biotechnol Lett 2007, 29:421-430. 10.1007/s10529-006-9254-9, 17195059.
-
(2007)
Biotechnol Lett
, vol.29
, pp. 421-430
-
-
Nagy, L.E.1
Meuser, J.E.2
Plummer, S.3
Seibert, M.4
Ghirardi, M.L.5
King, P.W.6
Ahmann, D.7
Posewitz, M.C.8
-
32
-
-
0030884074
-
Isolation and analysis of the gene encoding the pyruvate-ferredoxin oxidoreductase of Desulfovibrio africanus, production of the recombinant enzyme in Escherichia coli, and effect of carboxy-terminal deletions on its stability
-
179454, 9294422
-
Pieulle L, Magro V, Hatchikian EC. Isolation and analysis of the gene encoding the pyruvate-ferredoxin oxidoreductase of Desulfovibrio africanus, production of the recombinant enzyme in Escherichia coli, and effect of carboxy-terminal deletions on its stability. J Bacteriol 1997, 179:5684-5692. 179454, 9294422.
-
(1997)
J Bacteriol
, vol.179
, pp. 5684-5692
-
-
Pieulle, L.1
Magro, V.2
Hatchikian, E.C.3
-
33
-
-
39149122173
-
Characterization of two 2[4Fe4S] ferredoxins from Clostridium acetobutylicum
-
10.1007/s00284-007-9072-x, 18074176
-
Guerrini O, Burlat B, Léger C, Guigliarelli B, Soucaille P, Girbal L. Characterization of two 2[4Fe4S] ferredoxins from Clostridium acetobutylicum. Curr Microbiol 2008, 56:261-267. 10.1007/s00284-007-9072-x, 18074176.
-
(2008)
Curr Microbiol
, vol.56
, pp. 261-267
-
-
Guerrini, O.1
Burlat, B.2
Léger, C.3
Guigliarelli, B.4
Soucaille, P.5
Girbal, L.6
-
34
-
-
31544450286
-
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection
-
2006.0008
-
Baba T, Ara T, Hasegawa M, Takai Y, Okumura Y, Baba M, Datsenko KA, Tomita M, Wanner BL, Mori H. Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol Syst Biol 2006, 2. 2006.0008.
-
(2006)
Mol Syst Biol
, vol.2
-
-
Baba, T.1
Ara, T.2
Hasegawa, M.3
Takai, Y.4
Okumura, Y.5
Baba, M.6
Datsenko, K.A.7
Tomita, M.8
Wanner, B.L.9
Mori, H.10
-
35
-
-
0031664853
-
A new logic for DNA engineering using recombination in Escherichia coli
-
10.1038/2417, 9771703
-
Zhang Y, Buchholz F, Muyrers JP, Stewart AF. A new logic for DNA engineering using recombination in Escherichia coli. Nat Genet 1998, 20:123-128. 10.1038/2417, 9771703.
-
(1998)
Nat Genet
, vol.20
, pp. 123-128
-
-
Zhang, Y.1
Buchholz, F.2
Muyrers, J.P.3
Stewart, A.F.4
-
36
-
-
84944816274
-
Spectrophotometric determination of hydrogen sulfide in natural waters
-
Cline J. Spectrophotometric determination of hydrogen sulfide in natural waters. Limnology and Oceanography 1969, 14:454-458.
-
(1969)
Limnology and Oceanography
, vol.14
, pp. 454-458
-
-
Cline, J.1
-
37
-
-
0004064137
-
-
New York, NY: Cambridge University Press, 3
-
Postgate J. Nitrogen Fixation 1998, New York, NY: Cambridge University Press, 3.
-
(1998)
Nitrogen Fixation
-
-
Postgate, J.1
-
38
-
-
0020614462
-
Penetration of oxygen into bacterial colonies
-
Wimpenny JW, Coombs JP. Penetration of oxygen into bacterial colonies. J Gen Microbiol 1983, 129:1239-1242.
-
(1983)
J Gen Microbiol
, vol.129
, pp. 1239-1242
-
-
Wimpenny, J.W.1
Coombs, J.P.2
-
39
-
-
0023239111
-
Oxygen profiles in, and in the agar beneath, colonies of Bacillus cereus, Staphylococcus albus and Escherichia coli
-
Peters AC, Wimpenny JW, Coombs JP. Oxygen profiles in, and in the agar beneath, colonies of Bacillus cereus, Staphylococcus albus and Escherichia coli. J Gen Microbiol 1987, 133:1257-1263.
-
(1987)
J Gen Microbiol
, vol.133
, pp. 1257-1263
-
-
Peters, A.C.1
Wimpenny, J.W.2
Coombs, J.P.3
-
40
-
-
58149193233
-
The SWISS-MODEL Repository and associated resources
-
10.1093/nar/gkn750, 2686475, 18931379
-
Kiefer F, Arnold K, Kunzli M, Bordoli L, Schwede T. The SWISS-MODEL Repository and associated resources. Nucleic Acids Res 2009, 37:D387-92. 10.1093/nar/gkn750, 2686475, 18931379.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Kiefer, F.1
Arnold, K.2
Kunzli, M.3
Bordoli, L.4
Schwede, T.5
-
41
-
-
41549166890
-
Dithiomethylether as a ligand in the hydrogenase h-cluster
-
10.1021/ja711187e, 18324814
-
Pandey AS, Harris TV, Giles LJ, Peters JW, Szilagyi RK. Dithiomethylether as a ligand in the hydrogenase h-cluster. J Am Chem Soc 2008, 130:4533-4540. 10.1021/ja711187e, 18324814.
-
(2008)
J Am Chem Soc
, vol.130
, pp. 4533-4540
-
-
Pandey, A.S.1
Harris, T.V.2
Giles, L.J.3
Peters, J.W.4
Szilagyi, R.K.5
-
42
-
-
0029014096
-
Algorithms for evaluating the long-range accessibility of protein surfaces
-
10.1006/jmbi.1995.0339, 7602592
-
Yeates TO. Algorithms for evaluating the long-range accessibility of protein surfaces. J Mol Biol 1995, 249:804-815. 10.1006/jmbi.1995.0339, 7602592.
-
(1995)
J Mol Biol
, vol.249
, pp. 804-815
-
-
Yeates, T.O.1
-
43
-
-
34548593310
-
Complete activity profile of Clostridium acetobutylicum [FeFe]-hydrogenase and kinetic parameters for endogenous redox partners
-
10.1111/j.1574-6968.2007.00868.x, 17681007
-
Demuez M, Cournac L, Guerrini O, Soucaille P, Girbal L. Complete activity profile of Clostridium acetobutylicum [FeFe]-hydrogenase and kinetic parameters for endogenous redox partners. FEMS Microbiology Letters 2007, 275:113-121. 10.1111/j.1574-6968.2007.00868.x, 17681007.
-
(2007)
FEMS Microbiology Letters
, vol.275
, pp. 113-121
-
-
Demuez, M.1
Cournac, L.2
Guerrini, O.3
Soucaille, P.4
Girbal, L.5
-
44
-
-
0032868231
-
Hyperproduction of recombinant ferredoxins in escherichia coli by coexpression of the ORF1-ORF2-iscS-iscU-iscA-hscB-hs cA-fdx-ORF3 gene cluster
-
Nakamura M, Saeki K, Takahashi Y. Hyperproduction of recombinant ferredoxins in escherichia coli by coexpression of the ORF1-ORF2-iscS-iscU-iscA-hscB-hs cA-fdx-ORF3 gene cluster. J Biochem 1999, 126:10-18.
-
(1999)
J Biochem
, vol.126
, pp. 10-18
-
-
Nakamura, M.1
Saeki, K.2
Takahashi, Y.3
-
45
-
-
38549126643
-
KEGG for linking genomes to life and the environment
-
2238879, 18077471
-
Kanehisa M, Araki M, Goto S, Hattori M, Hirakawa M, Itoh M, Katayama T, Kawashima S, Okuda S, Tokimatsu T, Yamanishi Y. KEGG for linking genomes to life and the environment. Nucleic Acids Res 2008, 36:D480-4. 2238879, 18077471.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Kanehisa, M.1
Araki, M.2
Goto, S.3
Hattori, M.4
Hirakawa, M.5
Itoh, M.6
Katayama, T.7
Kawashima, S.8
Okuda, S.9
Tokimatsu, T.10
Yamanishi, Y.11
-
46
-
-
34347332311
-
A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information
-
1911197, 17593909
-
Feist AM, Henry CS, Reed JL, Krummenacker M, Joyce AR, Karp PD, Broadbelt LJ, Hatzimanikatis V, Palsson B. A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information. Mol Syst Biol 2007, 3:121. 1911197, 17593909.
-
(2007)
Mol Syst Biol
, vol.3
, pp. 121
-
-
Feist, A.M.1
Henry, C.S.2
Reed, J.L.3
Krummenacker, M.4
Joyce, A.R.5
Karp, P.D.6
Broadbelt, L.J.7
Hatzimanikatis, V.8
Palsson, B.9
-
47
-
-
0033777345
-
Analysis of reductant supply systems for ferredoxin-dependent sulfite reductase in photosynthetic and nonphotosynthetic organs of maize
-
10.1104/pp.122.3.887, 58925, 10712553
-
Yonekura-Sakakibara K, Onda Y, Ashikari T, Tanaka Y, Kusumi T, Hase T. Analysis of reductant supply systems for ferredoxin-dependent sulfite reductase in photosynthetic and nonphotosynthetic organs of maize. Plant Physiol 2000, 122:887-894. 10.1104/pp.122.3.887, 58925, 10712553.
-
(2000)
Plant Physiol
, vol.122
, pp. 887-894
-
-
Yonekura-Sakakibara, K.1
Onda, Y.2
Ashikari, T.3
Tanaka, Y.4
Kusumi, T.5
Hase, T.6
-
48
-
-
0030447225
-
Cellular and molecular physiology of Escherichia coli in the adaptation to aerobic environments
-
Iuchi S, Weiner L. Cellular and molecular physiology of Escherichia coli in the adaptation to aerobic environments. J Biochem 1996, 120:1055-1063.
-
(1996)
J Biochem
, vol.120
, pp. 1055-1063
-
-
Iuchi, S.1
Weiner, L.2
-
49
-
-
0028104977
-
Flavodoxin and NADPH-flavodoxin reductase from Escherichia coli support bovine cytochrome P450c17 hydroxylase activities
-
Jenkins CM, Waterman MR. Flavodoxin and NADPH-flavodoxin reductase from Escherichia coli support bovine cytochrome P450c17 hydroxylase activities. J Biol Chem 1994, 269:27401-27408.
-
(1994)
J Biol Chem
, vol.269
, pp. 27401-27408
-
-
Jenkins, C.M.1
Waterman, M.R.2
-
50
-
-
63649098478
-
Construction of a synthetic YdbK-dependent pyruvate:H2 pathway in Escherichia coli BL21(DE3)
-
10.1016/j.ymben.2009.01.002, 19558967
-
Akhtar MK, Jones PR. Construction of a synthetic YdbK-dependent pyruvate:H2 pathway in Escherichia coli BL21(DE3). Metab Eng 2009, 11:139-147. 10.1016/j.ymben.2009.01.002, 19558967.
-
(2009)
Metab Eng
, vol.11
, pp. 139-147
-
-
Akhtar, M.K.1
Jones, P.R.2
-
51
-
-
45849105519
-
Characterization of the recombinant Rieske [2Fe-2S] proteins HcaC and YeaW from E. coli
-
10.1007/s10534-008-9134-y, 18286376
-
Boxhammer S, Glaser S, Kühl A, Wagner AK, Schmidt CL. Characterization of the recombinant Rieske [2Fe-2S] proteins HcaC and YeaW from E. coli. Biometals 2008, 21:459-467. 10.1007/s10534-008-9134-y, 18286376.
-
(2008)
Biometals
, vol.21
, pp. 459-467
-
-
Boxhammer, S.1
Glaser, S.2
Kühl, A.3
Wagner, A.K.4
Schmidt, C.L.5
-
52
-
-
0037122938
-
Succinate dehydrogenase and fumarate reductase from Escherichia coli
-
10.1016/S0005-2728(01)00238-9, 11803023
-
Cecchini G, Schröder I, Gunsalus RP, Maklashina E. Succinate dehydrogenase and fumarate reductase from Escherichia coli. Biochim Biophys Acta 2002, 1553:140-157. 10.1016/S0005-2728(01)00238-9, 11803023.
-
(2002)
Biochim Biophys Acta
, vol.1553
, pp. 140-157
-
-
Cecchini, G.1
Schröder, I.2
Gunsalus, R.P.3
Maklashina, E.4
-
53
-
-
34548674731
-
Escherichia coli hydrogenase 3 is a reversible enzyme possessing hydrogen uptake and synthesis activities
-
10.1007/s00253-007-1086-6, 17668201
-
Maeda T, Sanchez-Torres V, Wood TK. Escherichia coli hydrogenase 3 is a reversible enzyme possessing hydrogen uptake and synthesis activities. Appl Microbiol Biotechnol 2007, 76:1035-1042. 10.1007/s00253-007-1086-6, 17668201.
-
(2007)
Appl Microbiol Biotechnol
, vol.76
, pp. 1035-1042
-
-
Maeda, T.1
Sanchez-Torres, V.2
Wood, T.K.3
-
54
-
-
0347285390
-
Expression and regulation of a silent operon, hyf, coding for hydrogenase 4 isoenzyme in Escherichia coli
-
10.1128/JB.186.2.580-587.2004, 305750, 14702328
-
Self WT, Hasona A, Shanmugam KT. Expression and regulation of a silent operon, hyf, coding for hydrogenase 4 isoenzyme in Escherichia coli. J Bacteriol 2004, 186:580-587. 10.1128/JB.186.2.580-587.2004, 305750, 14702328.
-
(2004)
J Bacteriol
, vol.186
, pp. 580-587
-
-
Self, W.T.1
Hasona, A.2
Shanmugam, K.T.3
-
55
-
-
78651486207
-
Insulation of a synthetic hydrogen metabolism circuit in bacteria
-
10.1186/1754-1611-4-3, 2847965, 20184755
-
Agapakis CM, Ducat DC, Boyle PM, Wintermute EH, Way JC, Silver PA. Insulation of a synthetic hydrogen metabolism circuit in bacteria. J Biol Eng 2010, 4:3. 10.1186/1754-1611-4-3, 2847965, 20184755.
-
(2010)
J Biol Eng
, vol.4
, pp. 3
-
-
Agapakis, C.M.1
Ducat, D.C.2
Boyle, P.M.3
Wintermute, E.H.4
Way, J.C.5
Silver, P.A.6
-
56
-
-
33748923119
-
Maturation of hydrogenases
-
Böck A, King PW, Blokesch M, Posewitz MC. Maturation of hydrogenases. Adv Microb Physiol 2006, 51:1-71.
-
(2006)
Adv Microb Physiol
, vol.51
, pp. 1-71
-
-
Böck, A.1
King, P.W.2
Blokesch, M.3
Posewitz, M.C.4
-
57
-
-
0034924971
-
Physical and genetic map of the Clostridium saccharobutylicum (formerly Clostridium acetobutylicum) NCP 262 chromosome
-
Keis S, Sullivan JT, Jones DT. Physical and genetic map of the Clostridium saccharobutylicum (formerly Clostridium acetobutylicum) NCP 262 chromosome. Microbiology (Reading, Engl) 2001, 147:1909-1922.
-
(2001)
Microbiology (Reading, Engl)
, vol.147
, pp. 1909-1922
-
-
Keis, S.1
Sullivan, J.T.2
Jones, D.T.3
-
58
-
-
0037173571
-
Fe-only hydrogenases: structure, function and evolution
-
10.1016/S0162-0134(02)00392-6, 12121756
-
Nicolet Y, Cavazza C, Fontecilla-Camps JC. Fe-only hydrogenases: structure, function and evolution. J Inorg Biochem 2002, 91:1-8. 10.1016/S0162-0134(02)00392-6, 12121756.
-
(2002)
J Inorg Biochem
, vol.91
, pp. 1-8
-
-
Nicolet, Y.1
Cavazza, C.2
Fontecilla-Camps, J.C.3
-
59
-
-
0013065880
-
Thermodynamics of biochemical reactions
-
Hoboken, NJ: John Wiley and Sons
-
Alberty RA. Thermodynamics of biochemical reactions. 2003, Hoboken, NJ: John Wiley and Sons.
-
(2003)
-
-
Alberty, R.A.1
-
60
-
-
4043169726
-
Structure and function of plant-type ferredoxins
-
Fukuyama K. Structure and function of plant-type ferredoxins. Photosynth Res 2004, 81:289-301.
-
(2004)
Photosynth Res
, vol.81
, pp. 289-301
-
-
Fukuyama, K.1
-
61
-
-
0029144219
-
Solution structure of the oxidized 2[4Fe-4S] ferredoxin from Clostridium pasteurianum
-
10.1111/j.1432-1033.1995.tb20799.x, 7556151
-
Bertini I, Donaire A, Feinberg BA, Luchinat C, Piccioli M, Yuan H. Solution structure of the oxidized 2[4Fe-4S] ferredoxin from Clostridium pasteurianum. Eur J Biochem 1995, 232:192-205. 10.1111/j.1432-1033.1995.tb20799.x, 7556151.
-
(1995)
Eur J Biochem
, vol.232
, pp. 192-205
-
-
Bertini, I.1
Donaire, A.2
Feinberg, B.A.3
Luchinat, C.4
Piccioli, M.5
Yuan, H.6
-
62
-
-
0024726277
-
Examination of protein sequence homologies: V. New perspectives on evolution between bacterial and chloroplast-type ferredoxins inferred from sequence evidence
-
10.1007/BF02100208, 2506358
-
Otaka E, Ooi T. Examination of protein sequence homologies: V. New perspectives on evolution between bacterial and chloroplast-type ferredoxins inferred from sequence evidence. J Mol Evol 1989, 29:246-254. 10.1007/BF02100208, 2506358.
-
(1989)
J Mol Evol
, vol.29
, pp. 246-254
-
-
Otaka, E.1
Ooi, T.2
-
63
-
-
0018685468
-
Structural and Evolution of Chloroplast- and Bacterial-Type Ferredoxins
-
Matsubara H, Hase T, Wakabayashi S, K W. Structural and Evolution of Chloroplast- and Bacterial-Type Ferredoxins. UCLA Forum Med Sci 1979, 21:245-266.
-
(1979)
UCLA Forum Med Sci
, vol.21
, pp. 245-266
-
-
Matsubara, H.1
Hase, T.2
Wakabayashi, S.3
K, W.4
-
64
-
-
0000133490
-
Ferredoxins as electron carriers in photosynthesis and in the biological production and consumption of hydrogen gas
-
10.1038/195537a0, 14039612
-
Tagawa K, Arnon DI. Ferredoxins as electron carriers in photosynthesis and in the biological production and consumption of hydrogen gas. Nature 1962, 195:537-543. 10.1038/195537a0, 14039612.
-
(1962)
Nature
, vol.195
, pp. 537-543
-
-
Tagawa, K.1
Arnon, D.I.2
-
65
-
-
70350033970
-
Pattern of expression and substrate specificity of chloroplast ferredoxins from Chlamydomonas reinhardtii
-
10.1074/jbc.M109.023622, 2757988, 19586916
-
Terauchi AM, Lu S, Zaffagnini M, Tappa S, Hirasawa M, Tripathy JN, Knaff DB, Farmer PJ, Lemaire SD, Hase T, Merchant SS. Pattern of expression and substrate specificity of chloroplast ferredoxins from Chlamydomonas reinhardtii. Journal of Biological Chemistry 2009, 284:25867-25878. 10.1074/jbc.M109.023622, 2757988, 19586916.
-
(2009)
Journal of Biological Chemistry
, vol.284
, pp. 25867-25878
-
-
Terauchi, A.M.1
Lu, S.2
Zaffagnini, M.3
Tappa, S.4
Hirasawa, M.5
Tripathy, J.N.6
Knaff, D.B.7
Farmer, P.J.8
Lemaire, S.D.9
Hase, T.10
Merchant, S.S.11
-
66
-
-
0029611001
-
Probing the role of electrostatic forces in the interaction of Clostridium pasteurianum ferredoxin with its redox partners
-
Moulis JM, Davasse V. Probing the role of electrostatic forces in the interaction of Clostridium pasteurianum ferredoxin with its redox partners. Biochem 1995, 34:16781-16788.
-
(1995)
Biochem
, vol.34
, pp. 16781-16788
-
-
Moulis, J.M.1
Davasse, V.2
-
67
-
-
78751703709
-
Computer simulation of interaction of photosystem 1 with plastocyanin and ferredoxin
-
10.1016/j.biosystems.2010.09.013, 20934483
-
Kovalenko IB, Abaturova AM, Riznichenko GY, Rubin AB. Computer simulation of interaction of photosystem 1 with plastocyanin and ferredoxin. BioSystems 2011, 103:180-187. 10.1016/j.biosystems.2010.09.013, 20934483.
-
(2011)
BioSystems
, vol.103
, pp. 180-187
-
-
Kovalenko, I.B.1
Abaturova, A.M.2
Riznichenko, G.Y.3
Rubin, A.B.4
-
68
-
-
76649114676
-
Protein dynamics and conformational disorder in molecular recognition
-
Mittag T, Kay LE, Forman-Kay JD. Protein dynamics and conformational disorder in molecular recognition. J Mol Recognit 2010, 23:105-116.
-
(2010)
J Mol Recognit
, vol.23
, pp. 105-116
-
-
Mittag, T.1
Kay, L.E.2
Forman-Kay, J.D.3
-
69
-
-
4243463817
-
Electrostatics in biomolecular structure and dynamics
-
Davis ME, McCammon JA. Electrostatics in biomolecular structure and dynamics. Chem Rev 1990, 90:509-521.
-
(1990)
Chem Rev
, vol.90
, pp. 509-521
-
-
Davis, M.E.1
McCammon, J.A.2
-
70
-
-
0344734110
-
Interaction of positively charged amino acid residues of recombinant, cyanobacterial ferredoxin:NADP+ reductase with ferredoxin probed by site directed mutagenesis
-
10.1016/S0005-2728(97)00085-6, 9511808
-
Schmitz S, Martínez-Júlvez M, Gómez-Moreno C, Böhme H. Interaction of positively charged amino acid residues of recombinant, cyanobacterial ferredoxin:NADP+ reductase with ferredoxin probed by site directed mutagenesis. Biochim Biophys Acta 1998, 1363:85-93. 10.1016/S0005-2728(97)00085-6, 9511808.
-
(1998)
Biochim Biophys Acta
, vol.1363
, pp. 85-93
-
-
Schmitz, S.1
Martínez-Júlvez, M.2
Gómez-Moreno, C.3
Böhme, H.4
-
71
-
-
36049005713
-
Atomic resolution modeling of the ferredoxin:[FeFe] hydrogenase complex from Chlamydomonas reinhardtii
-
10.1529/biophysj.107.108589, 2025642, 17660315
-
Chang CH, King PW, Ghirardi ML, Kim K. Atomic resolution modeling of the ferredoxin:[FeFe] hydrogenase complex from Chlamydomonas reinhardtii. Biophys J 2007, 93:3034-3045. 10.1529/biophysj.107.108589, 2025642, 17660315.
-
(2007)
Biophys J
, vol.93
, pp. 3034-3045
-
-
Chang, C.H.1
King, P.W.2
Ghirardi, M.L.3
Kim, K.4
-
72
-
-
36549000721
-
Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite
-
10.1038/nature06269, 18033299
-
Warnecke F, Luginbühl P, Ivanova N, Ghassemian M, Richardson TH, Stege JT, Cayouette M, McHardy AC, Djordjevic G, Aboushadi N, Sorek R, Tringe SG, Podar M, Martin HG, Kunin V, Dalevi D, Madejska J, Kirton E, Platt D, Szeto E, Salamov A, Barry K, Mikhailova N, Kyrpides NC, Matson EG, Ottesen EA, Zhang X, Hernández M, Murillo C, Acosta LG, Rigoutsos I, Tamayo G, Green BD, Chang C, Rubin EM, Mathur EJ, Robertson DE, Hugenholtz P, Leadbetter JR. Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite. Nature 2007, 450:560-565. 10.1038/nature06269, 18033299.
-
(2007)
Nature
, vol.450
, pp. 560-565
-
-
Warnecke, F.1
Luginbühl, P.2
Ivanova, N.3
Ghassemian, M.4
Richardson, T.H.5
Stege, J.T.6
Cayouette, M.7
McHardy, A.C.8
Djordjevic, G.9
Aboushadi, N.10
Sorek, R.11
Tringe, S.G.12
Podar, M.13
Martin, H.G.14
Kunin, V.15
Dalevi, D.16
Madejska, J.17
Kirton, E.18
Platt, D.19
Szeto, E.20
Salamov, A.21
Barry, K.22
Mikhailova, N.23
Kyrpides, N.C.24
Matson, E.G.25
Ottesen, E.A.26
Zhang, X.27
Hernández, M.28
Murillo, C.29
Acosta, L.G.30
Rigoutsos, I.31
Tamayo, G.32
Green, B.D.33
Chang, C.34
Rubin, E.M.35
Mathur, E.J.36
Robertson, D.E.37
Hugenholtz, P.38
Leadbetter, J.R.39
more..
-
73
-
-
78650121749
-
Development of an in vitro compartmentalization screen for high-throughput directed evolution of [FeFe] hydrogenases
-
10.1371/journal.pone.0015275, 2997796, 21151915
-
Stapleton JA, Swartz JR. Development of an in vitro compartmentalization screen for high-throughput directed evolution of [FeFe] hydrogenases. PLoS ONE 2010, 5:e15275. 10.1371/journal.pone.0015275, 2997796, 21151915.
-
(2010)
PLoS ONE
, vol.5
-
-
Stapleton, J.A.1
Swartz, J.R.2
|