메뉴 건너뛰기




Volumn 11, Issue 5, 2011, Pages 886-894

Detection of recombination breakpoints in the genomes of human enterovirus 71 strains isolated in the Netherlands in epidemic and non-epidemic years, 1963-2010

Author keywords

Genome recombination; Human enterovirus 71

Indexed keywords

5' UNTRANSLATED REGION; ARTICLE; ASIAN; CONTROLLED STUDY; ENTEROVIRUS; ENTEROVIRUS INFECTION; EPIDEMIC; GENETIC RECOMBINATION; GENETIC VARIABILITY; GENOME ANALYSIS; HUMAN; HUMAN CELL; HUMAN ENTEROVIRUS 71; MOLECULAR EVOLUTION; NETHERLANDS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; VIRUS GENOME; VIRUS ISOLATION; VIRUS RECOMBINANT; VIRUS STRAIN;

EID: 79956323635     PISSN: 15671348     EISSN: 15677257     Source Type: Journal    
DOI: 10.1016/j.meegid.2011.02.011     Document Type: Article
Times cited : (43)

References (45)
  • 3
    • 33645568886 scopus 로고    scopus 로고
    • Phylogenetic identification of lateral genetic transfer events
    • Beiko R.G., Hamilton N. Phylogenetic identification of lateral genetic transfer events. BMC Evol. Biol. 2006, 6:15.
    • (2006) BMC Evol. Biol. , vol.6 , pp. 15
    • Beiko, R.G.1    Hamilton, N.2
  • 4
    • 0032752851 scopus 로고    scopus 로고
    • Molecular epidemiology and evolution of enterovirus 71 strains isolated from 1970 to 1998
    • Brown B.A., Oberste M.S., Alexander J.P., Kennett M.L., Pallansch M.A. Molecular epidemiology and evolution of enterovirus 71 strains isolated from 1970 to 1998. J. Virol. 1999, 73:9969-9975.
    • (1999) J. Virol. , vol.73 , pp. 9969-9975
    • Brown, B.A.1    Oberste, M.S.2    Alexander, J.P.3    Kennett, M.L.4    Pallansch, M.A.5
  • 5
    • 0029557306 scopus 로고
    • Complete nucleotide sequence of enterovirus 71 is distinct from poliovirus
    • Brown B.A., Pallansch M.A. Complete nucleotide sequence of enterovirus 71 is distinct from poliovirus. Virus Res. 1995, 39:195-205.
    • (1995) Virus Res. , vol.39 , pp. 195-205
    • Brown, B.A.1    Pallansch, M.A.2
  • 6
    • 0037648399 scopus 로고    scopus 로고
    • Molecular epidemiology of human enterovirus 71 strains and recent outbreaks in the Asia-Pacific region: comparative analysis of the VP1 and VP4 genes
    • Cardosa M.J., Perera D., Brown B.A., Cheon D., Chan H.M., Chan K.P., Cho H., McMinn P. Molecular epidemiology of human enterovirus 71 strains and recent outbreaks in the Asia-Pacific region: comparative analysis of the VP1 and VP4 genes. Emerg. Infect. Dis. 2003, 9:461-468.
    • (2003) Emerg. Infect. Dis. , vol.9 , pp. 461-468
    • Cardosa, M.J.1    Perera, D.2    Brown, B.A.3    Cheon, D.4    Chan, H.M.5    Chan, K.P.6    Cho, H.7    McMinn, P.8
  • 7
    • 79956292846 scopus 로고    scopus 로고
    • CDC and WHO, Report on the Hand, Foot and Mouth Disease outbreak in Fuyang City, Anhui Province and the Prevention and Control in China.
    • CDC and WHO, 2008. Report on the Hand, Foot and Mouth Disease outbreak in Fuyang City, Anhui Province and the Prevention and Control in China.
    • (2008)
  • 8
    • 0037240370 scopus 로고    scopus 로고
    • Epidemic hand, foot and mouth disease caused by human enterovirus 71, Singapore
    • Chan K.P., Goh K.T., Chong C.Y., Teo E.S., Lau G., Ling A.E. Epidemic hand, foot and mouth disease caused by human enterovirus 71, Singapore. Emerg. Infect. Dis. 2003, 9:78-85.
    • (2003) Emerg. Infect. Dis. , vol.9 , pp. 78-85
    • Chan, K.P.1    Goh, K.T.2    Chong, C.Y.3    Teo, E.S.4    Lau, G.5    Ling, A.E.6
  • 9
    • 57049187089 scopus 로고    scopus 로고
    • Enterovirus 71 in Taiwan
    • Chang L.Y. Enterovirus 71 in Taiwan. Pediatr. Neonatol. 2008, 49:103-112.
    • (2008) Pediatr. Neonatol. , vol.49 , pp. 103-112
    • Chang, L.Y.1
  • 10
    • 34547663617 scopus 로고    scopus 로고
    • Epidemiologic features of hand-foot-mouth disease and herpangina caused by enterovirus 71 in Taiwan, 1998-2005
    • Chen K.T., Chang H.L., Wang S.T., Cheng Y.T., Yang J.Y. Epidemiologic features of hand-foot-mouth disease and herpangina caused by enterovirus 71 in Taiwan, 1998-2005. Pediatrics 2007, 120:e244-252.
    • (2007) Pediatrics , vol.120
    • Chen, K.T.1    Chang, H.L.2    Wang, S.T.3    Cheng, Y.T.4    Yang, J.Y.5
  • 13
    • 59149091233 scopus 로고    scopus 로고
    • Genetic diversity of enterovirus 71 isolated from cases of hand, foot and mouth disease in the 1997, 2000 and 2005 outbreaks, Peninsular Malaysia
    • Chua K.B., Chua B.H., Lee C.S., Chem Y.K., Ismail N., Kiyu A., Kumarasamy V. Genetic diversity of enterovirus 71 isolated from cases of hand, foot and mouth disease in the 1997, 2000 and 2005 outbreaks, Peninsular Malaysia. Malays. J. Pathol. 2007, 29:69-78.
    • (2007) Malays. J. Pathol. , vol.29 , pp. 69-78
    • Chua, K.B.1    Chua, B.H.2    Lee, C.S.3    Chem, Y.K.4    Ismail, N.5    Kiyu, A.6    Kumarasamy, V.7
  • 14
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl. Acids Symp. Ser. 1999, 41:95-98.
    • (1999) Nucl. Acids Symp. Ser. , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 15
    • 33751253784 scopus 로고    scopus 로고
    • Recombination patterns in aphthoviruses mirror those found in other picornaviruses
    • Heath L., van der Walt E., Varsani A., Martin D. Recombination patterns in aphthoviruses mirror those found in other picornaviruses. J. Virol. 2006, 80:11827-11832.
    • (2006) J. Virol. , vol.80 , pp. 11827-11832
    • Heath, L.1    van der Walt, E.2    Varsani, A.3    Martin, D.4
  • 16
    • 0002515385 scopus 로고
    • Enterovirus genetics
    • American Society for Microbiology, H.A. Rotbart (Ed.)
    • Hellen C.U.T., Wimmer E. Enterovirus genetics. Human Enterovirus Infections 1995, American Society for Microbiology, pp. 25-72. H.A. Rotbart (Ed.).
    • (1995) Human Enterovirus Infections , pp. 25-72
    • Hellen, C.U.T.1    Wimmer, E.2
  • 22
    • 65949117838 scopus 로고    scopus 로고
    • Identifying recombinants in human and primate immunodeficiency virus sequence alignments using quartet scanning
    • Lemey P., Lott M., Martin D.P., Moulton V. Identifying recombinants in human and primate immunodeficiency virus sequence alignments using quartet scanning. BMC Bioinform. 2009, 10:126.
    • (2009) BMC Bioinform. , vol.10 , pp. 126
    • Lemey, P.1    Lott, M.2    Martin, D.P.3    Moulton, V.4
  • 23
    • 23744510743 scopus 로고    scopus 로고
    • Genetic characteristics of human enterovirus 71 and coxsackievirus A16 circulating from 1999 to 2004 in Shenzhenm, People's Republic of China
    • Li L., He Y., Yang H., Zhu J., Xu X., Dong J., Zhu Y., Jin Q. Genetic characteristics of human enterovirus 71 and coxsackievirus A16 circulating from 1999 to 2004 in Shenzhenm, People's Republic of China. J. Clin. Microbiol. 2005, 43:3835-3839.
    • (2005) J. Clin. Microbiol. , vol.43 , pp. 3835-3839
    • Li, L.1    He, Y.2    Yang, H.3    Zhu, J.4    Xu, X.5    Dong, J.6    Zhu, Y.7    Jin, Q.8
  • 24
    • 58549088736 scopus 로고    scopus 로고
    • Far upstream element binding protein 2 interacts with enterovirus 71 internal ribosomal entry site and negatively regulates viral translation
    • Lin J.Y., Li M.L., Shih S.R. Far upstream element binding protein 2 interacts with enterovirus 71 internal ribosomal entry site and negatively regulates viral translation. Nucl. Acids Res. 2009, 37:47-59.
    • (2009) Nucl. Acids Res. , vol.37 , pp. 47-59
    • Lin, J.Y.1    Li, M.L.2    Shih, S.R.3
  • 25
    • 0032889281 scopus 로고    scopus 로고
    • Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination
    • Lole K.S., Bollinger R.C., Paranjape R.S., Gadkari D., Kulkarni S.S., Novak N.G., Ingersoll R., Sheppard H.W., Ray S.C. Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination. J. Virol. 1999, 73:152-160.
    • (1999) J. Virol. , vol.73 , pp. 152-160
    • Lole, K.S.1    Bollinger, R.C.2    Paranjape, R.S.3    Gadkari, D.4    Kulkarni, S.S.5    Novak, N.G.6    Ingersoll, R.7    Sheppard, H.W.8    Ray, S.C.9
  • 27
    • 0034911094 scopus 로고    scopus 로고
    • Phylogenetic analysis of enterovirus 71 strains isolated during linked epidemics in Malaysia, Singapore, and Western Australia
    • McMinn P., Lindsay K., Perera D., Chan H.M., Chan K.P., Cardosa M.J. Phylogenetic analysis of enterovirus 71 strains isolated during linked epidemics in Malaysia, Singapore, and Western Australia. J. Virol. 2001, 75:7732-7738.
    • (2001) J. Virol. , vol.75 , pp. 7732-7738
    • McMinn, P.1    Lindsay, K.2    Perera, D.3    Chan, H.M.4    Chan, K.P.5    Cardosa, M.J.6
  • 31
    • 0346688632 scopus 로고    scopus 로고
    • Evidence for frequent recombination within species human enterovirus B based on complete genomic sequences of all thirty-seven serotypes
    • Oberste M.S., Maher K., Pallansch M.A. Evidence for frequent recombination within species human enterovirus B based on complete genomic sequences of all thirty-seven serotypes. J. Virol. 2004, 78:855-867.
    • (2004) J. Virol. , vol.78 , pp. 855-867
    • Oberste, M.S.1    Maher, K.2    Pallansch, M.A.3
  • 32
    • 0032849327 scopus 로고    scopus 로고
    • Evidence of recombination among enteroviruses
    • Santti J., Hyypia T., Kinnunen L., Salminen M. Evidence of recombination among enteroviruses. J. Virol. 1999, 73:8741-8749.
    • (1999) J. Virol. , vol.73 , pp. 8741-8749
    • Santti, J.1    Hyypia, T.2    Kinnunen, L.3    Salminen, M.4
  • 35
    • 0242268125 scopus 로고    scopus 로고
    • Enterovirus 71 contains a type I IRES element that functions when eukaryotic initiation factor eIF4G is cleaved
    • Thompson S.R., Sarnow P. Enterovirus 71 contains a type I IRES element that functions when eukaryotic initiation factor eIF4G is cleaved. Virology 2003, 315:259-266.
    • (2003) Virology , vol.315 , pp. 259-266
    • Thompson, S.R.1    Sarnow, P.2
  • 37
    • 0028509254 scopus 로고
    • TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment
    • Van de Peer Y., De Wachter R. TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment. Comput. Appl. Biosci. 1994, 10:569-570.
    • (1994) Comput. Appl. Biosci. , vol.10 , pp. 569-570
    • Van de Peer, Y.1    De Wachter, R.2
  • 39
    • 77955297218 scopus 로고    scopus 로고
    • Evolutionary trajectory of the VP1 gene of human enterovirus 71 genogroup B and C viruses
    • Van der Sanden S., Van der Avoort H., Lemey P., Uslu G., Koopmans M. Evolutionary trajectory of the VP1 gene of human enterovirus 71 genogroup B and C viruses. J. Gen. Virol. 2010, 91:1949-1958.
    • (2010) J. Gen. Virol. , vol.91 , pp. 1949-1958
    • Van der Sanden, S.1    Van der Avoort, H.2    Lemey, P.3    Uslu, G.4    Koopmans, M.5
  • 40
    • 77954668466 scopus 로고    scopus 로고
    • An RNA element at the 5′-end of the poliovirus genome functions as a general promoter for RNA synthesis
    • Vogt D.A., Andino R. An RNA element at the 5′-end of the poliovirus genome functions as a general promoter for RNA synthesis. PLoS Pathog. 2010, 6:e1000936.
    • (2010) PLoS Pathog. , vol.6
    • Vogt, D.A.1    Andino, R.2
  • 41
    • 0031892518 scopus 로고    scopus 로고
    • Phylogenetic profiles: a graphical method for detecting genetic recombinations in homologous sequences
    • Weiller G.F. Phylogenetic profiles: a graphical method for detecting genetic recombinations in homologous sequences. Mol. Biol. Evol. 1998, 15:326-335.
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 326-335
    • Weiller, G.F.1
  • 43
    • 77957017113 scopus 로고    scopus 로고
    • Emergence of enterovirus 71 " double-recombinant" strains belonging to a novel genotype D originating from southern China: first evidence for combination of intratypic and intertypic recombination events in EV71
    • Yip C.C., Lau S.K., Zhou B., Zhang M.X., Tsoi H.W., Chan K.H., Chen X.C., Woo P.C., Yuen K.Y. Emergence of enterovirus 71 " double-recombinant" strains belonging to a novel genotype D originating from southern China: first evidence for combination of intratypic and intertypic recombination events in EV71. Arch. Virol. 2010, 10.1007/s00705-010-0722-0.
    • (2010) Arch. Virol.
    • Yip, C.C.1    Lau, S.K.2    Zhou, B.3    Zhang, M.X.4    Tsoi, H.W.5    Chan, K.H.6    Chen, X.C.7    Woo, P.C.8    Yuen, K.Y.9
  • 44
    • 33748784320 scopus 로고    scopus 로고
    • Phylogenetic evidence for inter-typic recombination in the emergence of human enterovirus 71 subgenotypes
    • Yoke-Fun C., AbuBakar S. Phylogenetic evidence for inter-typic recombination in the emergence of human enterovirus 71 subgenotypes. BMC Microbiol. 2006, 6:74.
    • (2006) BMC Microbiol. , vol.6 , pp. 74
    • Yoke-Fun, C.1    AbuBakar, S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.