The circulation of subgenogroups B5 and C5 of enterovirus 71 in Taiwan from 2006 to 2007

Virus Research

Volumn 137, Issue 2, 2008, Pages 206-212

  Huang, Yuan Pin ^a   Lin, Tsuey Li ^a   Kuo, Chuan Yi ^a   Lin, Miao Wen ^a   Yao, Ching Yuan ^a   Liao, Hui Wen ^a   Hsu, Li Ching ^a   Yang, Chen Fu ^a   Yang, Jyh Yuan ^a   Chen, Pei Jer ^b   Wu, Ho Sheng ^a,c  

^a CENTER FOR DISEASE CONTROL   (Taiwan)

^b NATIONAL TAIWAN UNIVERSITY   (Taiwan)

^c TAIPEI MEDICAL UNIVERSITY   (Taiwan)

Author keywords

Enterovirus 71; Phylogenetic analysis; Subgenogroup

Indexed keywords

ALANINE; GLUTAMIC ACID; LYSINE; PROTEIN VP1; THREONINE;

AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; AMINO TERMINAL SEQUENCE; ARTICLE; CHILD; CLINICAL ARTICLE; ENTEROVIRUS 71; FEMALE; GENE SEQUENCE; GENETIC ANALYSIS; GENOME; GENOME ANALYSIS; GENOTYPE; HUMAN; INFANT; MALE; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA EXTRACTION; SEQUENCE ALIGNMENT; TAIWAN; UNINDEXED SEQUENCE; VIRUS ISOLATION; VIRUS STRAIN;

ENTEROVIRUS; HUMAN ENTEROVIRUS 71;

EID: 84984578011     PISSN: 01681702     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.virusres.2008.07.015     Document Type: Article

References (46)

1. Brown B.A., Oberste M.S., Alexander Jr. J.P., Kennett M.L., and Pallansch M.A. Molecular epidemiology and evolution of enterovirus 71 strains isolated from 1970 to 1998. J. Virol. 73 12 (1999) 9969-9975
2. Cardosa M.J., Perera D., Brown B.A., Cheon D., Chan H.M., Chan K.P., Cho H., and McMinn P. Molecular epidemiology of human enterovirus 71 strains and recent outbreaks in the Asia-Pacific region: comparative analysis of the VP1 and VP4 genes. Emerg. Infect. Dis. 9 4 (2003) 461-468
3. Chang L.Y., Hsia S.H., Wu C.T., Huang Y.C., Lin K.L., Fang T.Y., and Lin T.Y. Outcome of enterovirus 71 infections with or without stage-based management: 1998 to 2002. Pediatr. Infect. Dis. J. 23 4 (2004) 327-332
4. Chen K.T., Chang H.L., Wang S.T., Cheng Y.T., and Yang J.Y. Epidemiologic features of hand-foot-mouth disease and herpangina caused by enterovirus 71 in Taiwan, 1998-2005. Pediatrics 120 2 (2007) e244-e252
5. Cuervo N.S., Guillot S., Romanenkova N., Combiescu M., Aubert-Combiescu A., Seghier M., Caro V., Crainic R., and Delpeyroux F. Genomic features of intertypic recombinant sabin poliovirus strains excreted by primary vaccines. J. Virol. 75 13 (2001) 5740-5751
6. Hall T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl. Acids Symp. 41 (1999) 95-98
7. Ho M. Enterovirus 71: the virus, its infections and outbreaks. J. Microbiol. Immunol. Infect. 33 4 (2000) 205-216
8. Ho M., Chen E.R., Hsu K.H., Twu S.J., Chen K.T., Tsai S.F., Wang J.R., and Shih S.R. An epidemic of enterovirus 71 infection in Taiwan. Taiwan Enterovirus Epidemic Working Group. N. Engl. J. Med. 341 13 (1999) 929-935
9. Huang S.C., Hsu Y.W., Wang H.C., Huang S.W., Kiang D., Tsai H.P., Wang S.M., Liu C.C., Lin K.H., Su I.J., and Wang J.R. Appearance of intratypic recombination of enterovirus 71 in Taiwan from 2002 to 2005. Virus Res. 131 2 (2008) 250-259
10. Junttila N., Leveque N., Kabue J.P., Cartet G., Mushiya F., Muyembe-Tamfum J.J., Trompette A., Lina B., Magnius L.O., Chomel J.J., and Norder H. New enteroviruses, EV-93 and EV-94, associated with acute flaccid paralysis in the Democratic Republic of the Congo. J. Med. Virol. 79 4 (2007) 393-400
11. Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16 (1980) 111-120
12. Kung S.H., Wang S.F., Huang C.W., Hsu C.C., Liu H.F., and Yang J.Y. Genetic and antigenic analyses of enterovirus 71 isolates in Taiwan during 1998-2005. Clin. Microbiol. Infect. 13 8 (2007) 782-787
13. Li L., He Y., Yang H., Zhu J., Xu X., Dong J., Zhu Y., and Jin Q. Genetic characteristics of human enterovirus 71 and coxsackievirus A16 circulating from 1999 to 2004 in Shenzhen, People's Republic of China. J. Clin. Microbiol. 43 8 (2005) 3835-3839
14. Lin K.H., Hwang K.P., Ke G.M., Wang C.F., Ke L.Y., Hsu Y.T., Tung Y.C., Chu P.Y., Chen B.H., Chen H.L., Kao C.L., Wang J.R., Eng H.L., Wang S.Y., Hsu L.C., and Chen H.Y. Evolution of EV71 genogroup in Taiwan from 1998 to 2005: an emerging of subgenogroup C4 of EV71. J. Med. Virol. 78 2 (2006) 254-262
15. Lin T.Y., Twu S.J., Ho M.S., Chang L.Y., and Lee C.Y. Enterovirus 71 outbreaks, Taiwan: occurrence and recognition. Emerg. Infect. Dis. 9 3 (2003) 291-293
16. Lole K.S., Bollinger R.C., Paranjape R.S., Gadkari D., Kulkarni S.S., Novak N.G., Ingersoll R., Sheppard H.W., and Ray S.C. Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination. J. Virol. 73 1 (1999) 152-160
17. Lukashev A.N., Lashkevich V.A., Ivanova O.E., Koroleva G.A., Hinkkanen A.E., and Ilonen J. Recombination in circulating enteroviruses. J. Virol. 77 19 (2003) 10423-10431
18. McMinn P., Lindsay K., Perera D., Chan H.M., Chan K.P., and Cardosa M.J. Phylogenetic analysis of enterovirus 71 strains isolated during linked epidemics in Malaysia, Singapore, and Western Australia. J. Virol. 75 16 (2001) 7732-7738
19. Melnick J.L. Enteroviruses: polioviruses, coxackieviruses, echoviruses, and newer enteroviruses. In: Field D.M.K.B.N., Howley P.M., Channock R.M., Melnick J.L., Monath T.P., Roizman B., and Straus S.E. (Eds). Fields Virology. 3rd ed. (1996), Lippincott-Raven Publishers, Philadelphia, PA 655-712
20. Mizuta K., Abiko C., Murata T., Matsuzaki Y., Itagaki T., Sanjoh K., Sakamoto M., Hongo S., Murayama S., and Hayasaka K. Frequent importation of enterovirus 71 from surrounding countries into the local community of Yamagata, Japan, between 1998 and 2003. J. Clin. Microbiol. 43 12 (2005) 6171-6175
21. Muir P., Kammerer U., Korn K., Mulders M.N., Poyry T., Weissbrich B., Kandolf R., Cleator G.M., and van Loon A.M. Molecular typing of enteroviruses: current status and future requirements. The European Union Concerted Action on Virus Meningitis and Encephalitis. Clin. Microbiol. Rev. 11 1 (1998) 202-227
22. Nix W.A., Oberste M.S., and Pallansch M.A. Sensitive, seminested PCR amplification of VP1 sequences for direct identification of all enterovirus serotypes from original clinical specimens. J. Clin. Microbiol. 44 8 (2006) 2698-2704
23. Norder H., Bjerregaard L., Magnius L., Lina B., Aymard M., and Chomel J.J. Sequencing of 'untypable' enteroviruses reveals two new types, EV-77 and EV-78, within human enterovirus type B and substitutions in the BC loop of the VP1 protein for known types. J. Gen. Virol. 84 Pt 4 (2003) 827-836
24. Oberste M.S., Maher K., Flemister M.R., Marchetti G., Kilpatrick D.R., and Pallansch M.A. Comparison of classic and molecular approaches for the identification of untypeable enteroviruses. J. Clin. Microbiol. 38 3 (2000) 1170-1174
25. Oberste M.S., Maher K., Kilpatrick D.R., Flemister M.R., Brown B.A., and Pallansch M.A. Typing of human enteroviruses by partial sequencing of VP1. J. Clin. Microbiol. 37 5 (1999) 1288-1293
26. Oberste M.S., Maher K., Michele S.M., Belliot G., Uddin M., and Pallansch M.A. Enteroviruses 76, 89, 90 and 91 represent a novel group within the species Human enterovirus A. J. Gen. Virol. 86 Pt 2 (2005) 445-451
27. Oberste M.S., Maher K., Nix W.A., Michele S.M., Uddin M., Schnurr D., al-Busaidy S., Akoua-Koffi C., and Pallansch M.A. Molecular identification of 13 new enterovirus types, EV79-88, EV97, and EV100-101, members of the species Human Enterovirus B. Virus Res. 128 1-2 (2007) 34-42
28. Oberste M.S., Maher K., Williams A.J., Dybdahl-Sissoko N., Brown B.A., Gookin M.S., Penaranda S., Mishrik N., Uddin M., and Pallansch M.A. Species-specific RT-PCR amplification of human enteroviruses: a tool for rapid species identification of uncharacterized enteroviruses. J. Gen. Virol. 87 Pt 1 (2006) 119-128
29. Oberste M.S., Penaranda S., Maher K., and Pallansch M.A. Complete genome sequences of all members of the species Human enterovirus A. J. Gen. Virol. 85 Pt 6 (2004) 1597-1607
30. Poyry T., Hyypia T., Horsnell C., Kinnunen L., Hovi T., and Stanway G. Molecular analysis of coxsackievirus A16 reveals a new genetic group of enteroviruses. Virology 202 2 (1994) 982-987
31. Robinson C.C., Willis M., Meagher A., Gieseker K.E., Rotbart H., and Glode M.P. Impact of rapid polymerase chain reaction results on management of pediatric patients with enteroviral meningitis. Pediatr. Infect. Dis. J. 21 4 (2002) 283-286
32. Sanders S.A., Herrero L.J., McPhie K., Chow S.S., Craig M.E., Dwyer D.E., Rawlinson W., and McMinn P.C. Molecular epidemiology of enterovirus 71 over two decades in an Australian urban community. Arch. Virol. 151 5 (2006) 1003-1013
33. Shih S.R., Ho M.S., Lin K.H., Wu S.L., Chen Y.T., Wu C.N., Lin T.Y., Chang L.Y., Tsao K.C., Ning H.C., Chang P.Y., Jung S.M., Hsueh C., and Chang K.S. Genetic analysis of enterovirus 71 isolated from fatal and non-fatal cases of hand, foot and mouth disease during an epidemic in Taiwan, 1998. Virus Res. 68 2 (2000) 127-136
34. Shimizu H., Utama A., Onnimala N., Li C., Li-Bi Z., Yu-Jie M., Pongsuwanna Y., and Miyamura T. Molecular epidemiology of enterovirus 71 infection in the Western Pacific Region. Pediatr. Int. 46 2 (2004) 231-235
35. Shimizu H., Utama A., Yoshii K., Yoshida H., Yoneyama T., Sinniah M., Yusof M.A., Okuno Y., Okabe N., Shih S.R., Chen H.Y., Wang G.R., Kao C.L., Chang K.S., Miyamura T., and Hagiwara A. Enterovirus 71 from fatal and nonfatal cases of hand, foot and mouth disease epidemics in Malaysia, Japan and Taiwan in 1997-1998. Jpn. J. Infect. Dis. 52 1 (1999) 12-15
36. Stanway, G., Brown, F., Christian, P., 2005. Picornaviridae. In: Fauquet, C.M., Mayo, M.A., Maniloff, J., Desselberger, U., Ball, L.A. (Eds.), Virus Taxonomy: Classification and Nomenclature of Viruses. Eighth report of the International Committee on the Taxonomy of Viruses. Elsevier Academic Press, Amsterdam, The Netherlands, pp. 757-778.
37. Tamura K., Dudley J., Nei M., and Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24 8 (2007) 1596-1599
38. Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucl. Acids Res. 22 22 (1994) 4673-4680
39. Tseng F.C., Huang H.C., Chi C.Y., Lin T.L., Liu C.C., Jian J.W., Hsu L.C., Wu H.S., Yang J.Y., Chang Y.W., Wang H.C., Hsu Y.W., Su I.J., and Wang J.R. Epidemiological survey of enterovirus infections occurring in Taiwan between 2000 and 2005: analysis of sentinel physician surveillance data. J. Med. Virol. 79 12 (2007) 1850-1860
40. Tu P.V., Thao N.T.T., Perera D., Huu T.K., Tien N.T.K., Thuong T.C., How O.M., Cardosa M.J., and McMinn P.C. Epidemiologic and virologic investigation of hand, foot, and mouth disease, southern Vietnam, 2005. Emerg. Infect. Dis. 13 (2007) 1733-1741
41. Vuorinen T., Vainionpaa R., and Hyypia T. Five years' experience of reverse-transcriptase polymerase chain reaction in daily diagnosis of enterovirus and rhinovirus infections. Clin. Infect. Dis. 37 3 (2003) 452-455
42. Wang J.R., Tuan Y.C., Tsai H.P., Yan J.J., Liu C.C., and Su I.J. Change of major genotype of enterovirus 71 in outbreaks of hand-foot-and-mouth disease in Taiwan between 1998 and 2000. J. Clin. Microbiol. 40 1 (2002) 10-15
43. Witso E., Palacios G., Ronningen K.S., Cinek O., Janowitz D., Rewers M., Grinde B., and Lipkin W.I. Asymptomatic circulation of HEV71 in Norway. Virus Res. 123 1 (2007) 19-29
44. Wu T.N., Tsai S.F., Li S.F., Lee T.F., Huang T.M., Wang M.L., Hsu K.H., and Shen C.Y. Sentinel surveillance for enterovirus 71, Taiwan, 1998. Emerg. Infect. Dis. 5 3 (1999) 458-460
45. Yan J.J., Wang J.R., Liu C.C., Yang H.B., and Su I.J. An outbreak of enterovirus 71 infection in Taiwan 1998: a comprehensive pathological, virological, and molecular study on a case of fulminant encephalitis. J. Clin. Virol. 17 1 (2000) 13-22
46. Yoke-Fun C., and AbuBakar S. Phylogenetic evidence for inter-typic recombination in the emergence of human enterovirus 71 subgenotypes. BMC Microbiol. 6 (2006) 74