Protein composition of the occlusion derived virus of Chrysodeixis chalcites nucleopolyhedrovirus

Virus Research

Volumn 158, Issue 1-2, 2011, Pages 1-7

  Xu, Fang ^a   Ince, Idotkbal Agah ^a,b   Boeren, Sjef ^a   Vlak, Just M ^a   van Oers, Monique M ^a  

^a WAGENINGEN UNIVERSITY   (Netherlands)

^b GIRESUN UNIVERSITY   (Turkey)

Author keywords

Baculoviruses; ChchNPV; DNA photolyase; LC MS MS; Proteomics

Indexed keywords

DEOXYRIBODIPYRIMIDINE PHOTOLYASE; VIRUS PROTEIN;

ARTICLE; BACULOVIRUS; CHRYSODEIXIS CHALCITES NUCLEOPOLYHEDROVIRUS; DNA REPAIR; ENZYME ASSAY; GENETIC CONSERVATION; LIQUID CHROMATOGRAPHY; NONHUMAN; NUCLEOTIDE SEQUENCE; OCCLUSION DERIVED VIRUS; OPEN READING FRAME; POLYHEDROSIS VIRUS; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN FUNCTION; PROTEOMICS; TANDEM MASS SPECTROMETRY; UNINDEXED SEQUENCE; VIRUS GENOME;

ANIMALS; CHROMATOGRAPHY, LIQUID; ELECTROPHORESIS, POLYACRYLAMIDE GEL; LARVA; LEPIDOPTERA; NUCLEOPOLYHEDROVIRUS; PROTEOME; TANDEM MASS SPECTROMETRY; VIRAL PROTEINS;

CHRYSODEIXIS CHALCITES NUCLEOPOLYHEDROVIRUS; NUCLEOPOLYHEDROVIRUS;

EID: 79956316376     PISSN: 01681702     EISSN: 18727492     Source Type: Journal    
DOI: 10.1016/j.virusres.2011.02.014     Document Type: Article

References (71)

1. Bideshi D.K., Anwar A.T., Federici B.A. A baculovirus anti-apoptosis gene homolog of the Trichoplusia ni granulovirus. Virus Genes 1999, 19:95-101.
2. Braunagel S.C., Elton D.M., Ma H., Summers M.D. Identification and analysis of an Autographa californica nuclear polyhedrosis virus structural protein of the occlusion-derived virus envelope: ODV-E56. Virology 1996, 217:97-110.
3. Braunagel S.C., He H., Ramamurthy P., Summers M.D. Transcription, translation, and cellular localization of three Autographa californica nuclear polyhedrosis virus structural proteins: ODV-E18, ODV-E35, and ODV-EC27. Virology 1996, 222:100-114.
4. Braunagel S.C., Burks J.K., Rosas-Acosta G., Harrison R.L., Ma H., Summers M.D. Mutations within the Autographa californica nucleopolyhedrovirus FP25K gene decrease the accumulation of ODV-E66 and alter its intranuclear transport. J. Virol. 1999, 73:8559-8570.
5. Braunagel S.C., Guidry P.A., Rosas-Acosta G., Engelking L., Summers M.D. Identification of BV/ODV-C42, an Autographa californica nucleopolyhedrovirus orf101-encoded structural protein detected in infected-cell complexes with ODV-EC27 and p78/83. J. Virol. 2001, 75:12331-12338.
6. Braunagel S.C., Russell W.K., Rosas-Acosta G., Russell D.H., Summers M.D. Determination of the protein composition of the occlusion-derived virus of Autographa californica nucleopolyhedrovirus. Proc. Natl. Acad. Sci. U. S. A. 2003, 100:9797-9802.
7. Chen W., Li Z., Li S., Li L., Yang K., Pang Y. Identification of Spodoptera litura multicapsid nucleopolyhedrovirus ORF97, a novel protein associated with envelope of occlusion-derived virus. Virus Genes 2006, 32:79-84.
8. Clem R.J. Baculoviruses and apoptosis: a diversity of genes and responses. Curr. Drug Targets 2007, 8:1069-1074.
9. Cohen D., Marek M., Davies B., Vlak J., van Oers M. Encyclopedia of Autographa californica nucleopolyhedrovirus genes. Virol. Sin. 2009, 24:359-414.
10. Cox J., Mann M. MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification. Nat. Biotechnol. 2008, 26:1367-1372.
11. Deng F., Wang R., Fang M., Jiang Y., Xu X., Wang H., Chen X., Arif B.M., Guo L., Wang H., Hu Z. Proteomics analysis of Helicoverpa armigera single nucleocapsid nucleopolyhedrovirus identified two new occlusion-derived virus-associated proteins, HA44 and HA100. J. Virol. 2007, 81:9377-9385.
12. Elias J.E., Gygi S.P. Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry. Nat. Methods 2007, 4:207-214.
13. Fang M., Wang H., Wang H., Yuan L., Chen X., Vlak J.M., Hu Z. Open reading frame 94 of Helicoverpa armigera single nucleocapsid nucleopolyhedrovirus encodes a novel conserved occlusion-derived virion protein, ODV-EC43. J. Gen. Virol. 2003, 84:3021-3027.
14. Fang M., Nie Y., Harris S., Erlandson M.A., Theilmann D.A. Autographa californica multiple nucleopolyhedrovirus core gene ac96 encodes a per os infectivity factor (PIF-4). J. Virol. 2009, 83:12569-12578.
15. Faulkner P., Kuzio J., Williams G.V., Wilson J.A. Analysis of p74, a PDV envelope protein of Autographa californica nucleopolyhedrovirus required for occlusion body infectivity in vivo. J. Gen. Virol. 1997, 78:3091-3100.
16. Gombart A.F., Pearson M.N., Rohrmann G.F., Beaudreaau G.S. A baculovirus polyhedral envelope-associated protein: genetic location, nucleotide sequence, and immunocytochemical characterization. Virology 1989, 169:182-193.
17. Gross C.H., Wolgamot G.M., Russell R.L.Q., Pearson M.N., Rohrmann G.F. A baculovirus encoded 16-kDa glycoprotein localizes near the nuclear membrane of infected cells. Virology 1993, 192:386-390.
18. Gutierrez S., Kikhno I., Lopez Ferber M. Transcription and promoter analysis of pif, an essential but low-expressed baculovirus gene. J. Gen. Virol. 2004, 85:331-341.
19. Harrison R.L., Summers M.D. Mutations in the Autographa californica multinucleocapsid nuclear polyhedrosis virus 25kDa protein gene result in reduced virion occlusion, altered intranuclear envelopment and enhanced virus production. J. Gen. Virol. 1995, 76:1451-1459.
20. Herniou E.A., Jehle J.A. Baculovirus phylogeny and evolution. Curr. Drug Targets 2007, 8:1043-1050.
21. IJkel W.F.J., van Strien E.A., Heldens J.G.M., Broer R., Zuidema D., Goldbach R.W., Vlak J.M. Sequence and organization of the Spodoptera exigua multicapsid nucleopolyhedrovirus genome. J. Gen. Virol. 1999, 80:3289-3304.
22. Ince I.A., Boeren S., van Oers M.M., Vervoort J.J.M., Vlak J.M. Proteomic analysis of Chilo iridescent virus. Virology 2010, 405:253-258.
23. Jehle J.A., Blissard G.W., Bonning B.C., Cory J.S., Herniou E.A., Rohrmann G.F., Theilmann D.A., Thiem S.M., Vlak J.M. On the classification and nomenclature of baculoviruses: a proposal for revision. Arch. Virol. 2006, 151:1257-1266.
24. Kamita S.G., Nagasaka K., Chua J.W., Shimada T., Mita K., Kobayashi M., Maeda S., Hammock B.D. A baculovirus-encoded protein tyrosine phosphatase gene induces enhanced locomotory activity in a lepidopteran host. Proc. Natl. Acad. Sci. U. S. A. 2005, 102:2584-2589.
25. Ke J., Wang J., Deng R., Wang X. Autographa californica multiple nucleopolyhedrovirus ac66 is required for the efficient egress of nucleocapsids from the nucleus, general synthesis of preoccluded virions and occlusion body formation. Virology 2008, 374:421-431.
26. Kikhno I., Gutierrez S., Croizier L., Croizier G., Ferber M.L. Characterization of pif, a gene required for the per os infectivity of Spodoptera littoralis nucleopolyhedrovirus. J. Gen. Virol. 2002, 83:3013-3022.
27. Kool M., Ahrens C.H., Goldbach R.W., Rohrmann G.F., Vlak J.M. Identification of genes involved in DNA replication of the Autographa californica baculovirus. Proc. Natl. Acad. Sci. U. S. A. 1994, 91:11212-11216.
28. Kool M., Voeten J.T.M., Goldbach R.W., Vlak J.M. Functional mapping of regions of the Autographa californica nuclear polyhedrosis viral genome required for DNA replication. Virology 1994, 198:680-689.
29. Kool M., Ahrens C.H., Vlak J.M., Rohrmann G.F. Replication of baculovirus DNA. J. Gen. Virol. 1995, 76:2103-2118.
30. Lapointe R., Popham H.J.R., Straschil U., Goulding D., O'-Reilly D.R., Olszewski J.A. Characterization of two Autographa californica nucleopolyhedrovirus proteins, Ac145 and Ac150, which affect oral infectivity in a host-dependent manner. J. Virol. 2004, 78:6439-6448.
31. Li Q., Donly C., Li L., Willis L.G., Theilmann D.A., Erlandson M. Sequence and organization of the Mamestra configurata nucleopolyhedrovirus genome. Virology 2002, 294:106-121.
32. Lu A., Carstens E.B. Nucleotide sequence and transcriptional analysis of the p80 gene of Autographa californica nuclear polyhedrosis virus: a homologue of the Orgyia pseudotsugata nuclear polyhedrosis virus capsid-associated gene. Virology 1992, 190:201-209.
33. McCarthy C.B., Theilmann D.A. AcMNPV ac143 (odv-e18) is essential for mediating budded virus production and is the 30th baculovirus core gene. Virology 2008, 375:277-291.
34. Miller L.K. The Baculoviruses 1997, Plenum Press, New York.
35. Miller L.K. Auxiliary genes of baculoviruses. The Baculoviruses 1997, Plenum Press, New York, pp. 267-300.
36. Moser B.A., Becnel J.J., White S.E., Afonso C., Kutish G., Savita S., Almira E. Morphological and molecular evidence that Culex nigripalpus baculovirus is an unusual member of the family Baculoviridae. J. Gen. Virol. 2001, 82:283-297.
37. Müller R., Pearson M.N., Russell R.L.Q., Rohrmann G.F. A capsid-associated protein of the multicapsid nuclear polyhedrosis virus of Orgyia pseudotsugata: genetic location, sequence, transcriptional mapping, and immunocytochemical characterization. Virology 1990, 176:133-144.
38. Nalcacioglu R., Dizman Y.A., Vlak J.M., Demirbag Z., van Oers M.M. Amsacta moorei entomopoxvirus encodes a functional DNA photolyase (AMV025). J. Invertebr. Pathol. 2010, 105:363-365.
39. Ohkawa T., Washburn J.O., Sitapara R., Sid E., Volkman L.E. Specific binding of Autographa californica M nucleopolyhedrovirus occlusion-derived virus to midgut cells of Heliothis virescens larvae is mediated by products of pif genes Ac119 and Ac022 but not by Ac115. J. Virol. 2005, 79:15258-15264.
40. Olszewski J., Miller L.K. Identification and characterization of a baculovirus structural protein, VP1054, required for nucleocapsid formation. J. Virol. 1997, 71:5040-5050.
41. Olszewski J., Miller L.K. A role for baculovirus GP41 in budded virus production. Virology 1997, 233:292-301.
42. Passarelli A.L., Miller L.K. Identification and transcriptional regulation of the baculovirus lef-6 gene. J. Virol. 1994, 68:4458-4467.
43. Pearson M.N., Russell R.L.Q., Rohrmann G.F., Beaudreau G.S. P39, a major baculovirus structural protein: immunocytochemical characterization and genetic location. Virology 1988, 167:407-413.
44. Peng J., Elias J.E., Thoreen C.C., Licklider L.J., Gygi S.P. Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large-scale protein analysis: the yeast proteome. J. Proteome Res. 2003, 2:43-50.
45. Peng K., van Oers M.M., Hu Z., van Lent J.W.M., Vlak J.M. Baculovirus per os infectivity factors form a complex on the surface of occlusion derived virus. J. Virol. 2010, 84:9497-9504.
46. Peng K., Wu M., Deng F., Song J., Dong C., Wang H., Hu Z. Identification of protein-protein interactions of the occlusion-derived virus-associated proteins of Helicoverpa armigera nucleopolyhedrovirus. J. Gen. Virol. 2010, 91:659-670.
47. Perera O., Green T.B., Stevens S.M., White S., Becnel J.J. Proteins associated with Culex nigripalpus nucleopolyhedrovirus occluded virions. J. Virol. 2007, 81:4585-4590.
48. Pham D.Q.D., Hice R.H., Sivasubramanian N., Federici B.A. The 1629-bp open reading frame of the Autographa californica multinucleocapsid nuclear polyhedrosis virus encodes a virion structural protein. Gene 1993, 137:275-280.
49. Pijlman G.P., Pruijssers A.J.P., Vlak J.M. Identification of pif-2, a third conserved baculovirus gene required for per os infection of insects. J. Gen. Virol. 2003, 84:2041-2049.
50. Rohrmann G.F. Polyhedrin structure. J. Gen. Virol. 1986, 67:1499-1513.
51. Russell R.L.Q., Rohrmann G.F. A 25-kDa protein is associated with the envelopes of occluded baculovirus virions. Virology 1993, 195:532-540.
52. Russell R.L.Q., Rohrmann G.F. Characterization of P91, a protein associated with virions of an Orgyia pseudotsugata baculovirus. Virology 1997, 233:210-223.
53. Russell R.L.Q., Funk C.J., Rohrmann G.F. Association of a baculovirus-encoded protein with the capsid basal region. Virology 1997, 227:142-152.
54. Sancar A. Structure and function of DNA photolyase and cryptochrome blue-light photoreceptors. Chem. Rev. 2003, 103:2203-2237.
55. Slack J., Arif B.M. The baculoviruses occlusion derived virus: virion structure and function. Adv. Virus Res. 2006, 69:99-165.
56. Song J., Wang R., Deng F., Wang H., Hu Z. Functional studies of per os infectivity factors of Helicoverpa armigera single nucleocapsid nucleopolyhedrovirus. J. Gen. Virol. 2008, 89:2331-2338.
57. Sparks W.O., Harrison R.L., Bonning B.C. Autographa californica multiple nucleopolyhedrovirus ODV-E56 is a per os infectivity factor, but is not essential for binding and fusion of occlusion-derived virus to the host midgut. Virology 2011, 409:69-76.
58. Srinivasan V., Schnitzlein W.M., Tripathy D.N. Fowlpox virus encodes a novel DNA repair enzyme, CPD-photolyase, that restores infectivity of UV light-damaged virus. J. Virol. 2001, 75:1681-1688.
59. Tomalski M.D., Eldridge R., Miller L.K. A baculovirus homolog of a Cu/Zn superoxide dismutase gene. Virology 1991, 184:149-161.
60. van Lent J.W.M., Groenen J.T.M., Klinge-Roode E.C., Rohrmann G.F., Zuidema D., Vlak J.M. Localization of the 34kDa polyhedron envelope protein in Spodoptera frugiperda cells infected with Autographa californica nuclear polyhedrosis virus. Arch. Virol. 1990, 111:103-114.
61. van Oers M.M., Vlak J.M. Baculovirus genomics. Curr. Drug Targets 2007, 8:1051-1068.
62. van Oers M.M., Herniou E.A., Usmany M., Messelink G.J., Vlak J.M. Identification and characterization of a DNA photolyase-containing baculovirus from Chrysodeixis chalcites. Virology 2004, 330:460-470.
63. van Oers M.M., Abma-Henkens M.H.C., Herniou E.A., de Groot J.C.W., Peters S., Vlak J.M. Genome sequence of Chrysodeixis chalcites nucleopolyhedrovirus, a baculovirus with two DNA photolyase genes. J. Gen. Virol. 2005, 86:2069-2080.
64. van Oers M.M., Lampen M.H., Bajek M.I., Vlak J.M., Eker A.P.M. Active DNA photolyase encoded by a baculovirus from the insect Chrysodeixis chalcites. DNA Repair 2008, 7:1309-1318.
65. Vanarsdall A.L., Okano K., Rohrmann G.F. Characterization of the role of very late expression factor 1 in baculovirus capsid structure and DNA processing. J. Virol. 2006, 80:1724-1733.
66. Vanarsdall A.L., Pearson M.N., Rohrmann G.F. Characterization of baculovirus constructs lacking either the Ac 101, Ac 142, or the Ac 144 open reading frame. Virology 2007, 367:187-195.
67. Wang Y., Wu W., Li Z., Yuan M., Feng G., Yu Q., Yang K., Pang Y. Ac18 is not essential for the propagation of Autographa californica multiple nucleopolyhedrovirus. Virology 2007, 367:71-81.
68. Weber S. Light-driven enzymatic catalysis of DNA repair: a review of recent biophysical studies on photolyase. BBA-Bioenergetics 2005, 1707:1-23.
69. Wilson M.E., Price K.H. Association of Autographa californica nuclear polyhedrosis virus (AcMNPV) with the nuclear matrix. Virology 1988, 167:233-241.
70. Wu W., Lin T., Pan L., Yu M., Li Z., Pang Y., Yang K. Autographa californica multiple nucleopolyhedrovirus nucleocapsid assembly is interrupted upon deletion of the 38K gene. J. Virol. 2006, 80:11475-11485.
71. Xu F., Vlak J.M., van Oers M.M. Conservation of DNA photolyase genes in group II nucleopolyhedroviruses infecting plusiine insects. Virus Res. 2008, 136:58-64.