Transcription and promoter analysis of pif, an essential but low-expressed baculovirus gene

Journal of General Virology

Volumn 85, Issue 2, 2004, Pages 331-341

  Gutiérrez, Serafín ^a   Kikhno, Iryna ^b   López Ferber, Miguel ^a  

^a CNRS   (France)

^b INSTITUTE OF MOLECULAR BIOLOGY AND GENETICS   (Ukraine)

Author keywords

[No Author keywords available]

Indexed keywords

ADENINE; GUANINE; MESSENGER RNA; PROTEIN PIF; RIBONUCLEASE; THYMINE; UNCLASSIFIED DRUG; VIRUS PROTEIN;

ANALYTIC METHOD; ANIMAL CELL; ARMYWORM; ARTICLE; BACULOVIRUS; CISTRON; CONTROLLED STUDY; EXTENSION GENE; GENE EXPRESSION REGULATION; GENE MUTATION; GENE SEQUENCE; GENETIC ANALYSIS; GENETIC CODE; GENETIC COMPLEMENTATION; GENETIC TRANSCRIPTION; MOUTH INFECTION; NONHUMAN; NORTHERN BLOTTING; NUCLEOTIDE SEQUENCE; POLYHEDROSIS VIRUS; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN ANALYSIS; PROTEIN FUNCTION; PROTEIN MOTIF; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RIBONUCLEASE PROTECTION ASSAY; SEQUENCE ANALYSIS; VIRION; VIRUS GENE; VIRUS INFECTIVITY;

ANIMALS; BLOTTING, NORTHERN; GENE EXPRESSION REGULATION, VIRAL; LARVA; MUTATION; NUCLEOPOLYHEDROVIRUS; PROMOTER REGIONS (GENETICS); REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, MESSENGER; RNA, VIRAL; SPODOPTERA; TRANSCRIPTION, GENETIC; VIRAL STRUCTURAL PROTEINS; VIRULENCE;

NUCLEOPOLYHEDROVIRUS; SPODOPTERA LITTORALIS; SPODOPTERA LITTORALIS NUCLEOPOLYHEDROVIRUS; UNIDENTIFIED BACULOVIRUS;

EID: 1342289075     PISSN: 00221317     EISSN: None     Source Type: Journal    
DOI: 10.1099/vir.0.19623-0     Document Type: Article

References (54)

1. Acharya, A. & Gopinathan, K. (2002). Transcriptional analysis and preliminary characterization of ORF Bm42 from Bombyx mori nucleopolyhedrovirus. Virology 299, 213-224.
2. Ahrens, C. H., Russell, R. L., Funk, C. J., Evans, J. T., Harwood, S. H. & Rohrmann, G. F. (1997). The sequence of the Orgyia pseudotsugata multinucleocapsid nuclear polyhedrosis virus genome. Virology 229, 381-399.
3. Anderson, K. P., Frink, R. J., Devi, G. B., Gaylord, B. H., Costa, R. H. & Wagner, E. K. (1981). Detailed characterization of the mRNA mapping in the HindIII fragment K region of the herpes simplex virus type I genome. J Virol 45, 62-67.
4. Ayres, M. D., Howard, S. C., Kuzio, J., Lopez-Ferber, M. & Possee, R. D. (1994). The complete DNA sequence of Autographa californica nuclear polyhedrosis virus. Virology 202, 586-605.
5. Bajszár, G., Wittek, R., Weir, J. P. & Moss, B. (1983). Vaccinia virus thymidine kinase and neighbouring genes: mRNAs and polypeptides of wild-type virus and putative nonsense mutants. J Virol 45, 62-72.
6. Blissard, G. W. & Rohrmann, G. F. (1989). Location, sequence, transcriptional mapping, and temporal expression of the gp64 envelope glycoprotein gene of the Orgyia pseudotsugata multicapsid nuclear polyhedrosis virus. Virology 170, 537-555.
7. Braunagel, S. C. & Summers, M. D. (1994). Autographa californica nuclear polyhedrosis virus, PDV, and ECV viral envelopes and nucleocapsids: structural proteins, antigens, lipid and fatty acid profiles. Virology 202, 315-328.
8. Brown, T. & Mackey, K. (1997). Analysis of RNA by Northern and slot blot hybridization. In Current Protocols in Molecular Biology, vol. 1, pp. 4.9.1-4.9.16. Edited by F. M. Ausubel, R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith & K. Struhl. New York: John Wiley.
9. Carstens, E. B., Lu, A. L. & Chan, H. L. (1993). Sequence, transcriptional mapping, and overexpression of p47, a baculovirus gene regulating late gene expression. J Virol 67, 2513-2520.
10. Chang, M. J. & Blissard, G. W. (1997). Baculovirus gp64 gene expression: negative regulation by a minicistron. J Virol 71, 7448-7460.
11. Chen, X., IJkel, W. F. J., Tarchini, R. & 8 other authors (2001). The sequence of the Helicoverpa armigera single nucleocapsid nucleopolyhedrovirus genome. J Gen Virol 82, 241-257.
12. Croizier, G., Boukhoudmi-Amiri, K. & Croizier, L. (1989). A physical map of Spodoptera littoralis B-type nuclear polyhedrosis virus genome. Arch Virol 104, 145-151.
13. Croizier, L., Jousset, F. X., Veyrunes, J. C., López-Ferber, M., Bergoin, M. & Croizier, G. (2000). Protein requirements for assembly of virus-like particles of Junonia coenia densovirus in insect cells. J Gen Virol 81, 1605-1613.
14. Faktor, O., Toister-Achituv, M. & Nahum, O. (1997). Enhancer element, repetitive sequences and gene organization in an 8 kbp region containing the polyhedrin gene of the Spodoptera littoralis nucleopolyhedrovirus. Arch Virol 142, 1-15.
15. Faulkner, P., Kuzio, J., Williams, G. V. & Wilson, J. A. (1997). Analysis of p74, a PDV envelope protein of Autographa californica nucleopolyhedrovirus required for occlusion body infectivity in vivo. J Gen Virol 78, 3091-3100.
16. Federici, B. A. (1997). Baculovirus pathogenesis. In The Baculoviruses, pp. 33-56. Edited by L. K. Miller. New York: Plenum.
17. Friesen, P. D. & Miller, L. K. (1985). Temporal regulation of baculovirus RNA: overlapping early and late transcripts. J Virol 54, 392-400.
18. Friesen, P. D. & Miller, L. K. (1986). The regulation of baculovirus gene expression. Curr Top Microbiol Immunol 131, 31-49.
19. Friesen, P. D. & Miller, L. K. (1987). Divergent transcription of early 35- and 94-kilodalton protein genes encoded by the HindIII K genome fragment of the baculovirus Autographa californica nuclear polyhedrosis virus. J Virol 61, 2264-2272.
20. Funk, C. J., Braunagel, S. C. & Rohrmann, G. F. (1997). Baculovirus structure. In The Baculoviruses, pp. 7-32. Edited by L. K. Miller. New York: Plenum.
21. Garrity, D. B., Chang, M. J. & Blissard, G. W. (1997). Late promoter selection in the baculovirus gp64 envelope fusion protein gene. Virology 231, 167-181.
22. Gomi, S., Majima, K. & Maeda, S. (1999). Sequence analysis of the genome of Bombyx mori nucleopolyhedrovirus. J Gen Virol 80, 1323-1337.
23. Granados, R. R. & Lawyer, K. A. (1981). In vivo pathway of Autographa californica baculovirus invasion and infection. Virology 108, 297-308.
24. Gross, C. H. & Rohrmann, G. F. (1993). Analysis of the role of 5′ promoter elements and 3′ flanking sequences on the expression of a baculovirus polyhedron envelope protein gene. Virology 192, 273-281.
25. Harrison, R. L. & Bonning, B. C. (2003). Comparative analysis of the genomes of Rachiplusia ou and Autographa californica multiple nucleopolyhedroviruses. J Gen Virol 84, 1827-1842.
26. Herniou, E. A., Olszewski, J. A., Cory, J. S. & O'Reilly, D. R. (2003). The genome sequence and evolution of baculoviruses. Annu Rev Entomol 48, 211-234.
27. Horton, H. M. & Burand, J. P. (1993). Saturable attachment sites for polyhedron-derived baculovirus on insect cells and evidence for entry via direct membrane fusion. J Virol 67, 1860-1868.
28. Hughes, P. R. & Wood, H. A. (1981). A synchronous peroral technique of the bioassay of insect viruses. J Invertebr Pathol 37, 154-159.
29. Hyink, O., Dellow, R. A., Olsen, M. J., Caradoc-Davies, K. M., Drake, K., Herniou, E. A., Cory, J. S., O'Reilly, D. R. & Ward, V. K. (2002). Whole genome analysis of the Epiphyas postvittana nucleopolyhedrovirus. J Gen Virol 83, 957-971.
30. IJkel, W. F. J., van Strien, E. A., Heldens, J. G., Broer, R., Zuidema, D., Goldbach, R. W. & Vlak, J. M. (1999). Sequence and organization of the Spodoptera exigua multicapsid nucleopolyhedrovirus genome. J Gen Virol 80, 3289-3304.
31. Jin, J. & Guarino, L. A. (2000). 3′-end formation of baculovirus late RNAs. J Virol 74, 8930-8937.
32. Kikhno, I., Gutiérrez, S., Croizier, L., Croizier, G. & López-Ferber, M. L. (2002). Characterization of pif, a gene required for the per os infectivity of Spodoptera littoralis nucleopolyhedrovirus. J Gen Virol 83, 3013-3022.
33. King, L. A. & Possee, R. D. (1992). Thc Baculovirus Expression System: a Laboratory Guide, 1st edn. London: Chapman & Hall.
34. Kozak, M. (1987). Effects of intercistronic length on the efficiency of reinitiation by eukaryotic ribosomes. Mol Cell Biol 7, 3438-3445.
35. Kuzio, J., Jaques, R. & Faulkner, P. (1989). Identification of p74, a gene essential for virulence of baculovirus occlusion bodies. Virology 173, 759-763.
36. Kuzio, J., Pearson, M. N., Harwood, S. H., Funk, C. J., Evans, J. T., Slavicek, J. M. & Rohrmann, G. F. (1999). Sequence and analysis of the genome of a baculovirus pathogenic for Lymantria dispar. Virology 253, 17-34.
37. Li, Q., Donly, C., Li, L., Willis, L. G., Theilmann, D. A. & Erlandson, M. (2002). Sequence and organization of the Mamestra configurata nucleopolyhedrovirus genome. Virology 294, 106-121.
38. López-Ferber, M., Simón, O., Williams, T. & Caballero, P. (2003). Deffective of effective? Mutualistic interactions between virus genotypes. Proc R Soc Lond B Biol Sci 270, 2249-2255.
39. Lu, A. & Miller, L. K. (1997). Regulation of baculovirus late and very late expression. In The Baculoviruses, pp. 193-211. Edited by L. K. Miller. New York: Plenum.
40. Morris, T. D. & Miller, L. K. (1994). Mutational analysis of a baculovirus major late promoter. Gene 140, 147-153.
41. Okano, K., Shimada, T., Mita, K. & Maeda, S. (2001). Comparative expressed-sequence-tag analysis of differential gene expression profiles in BmNPV-infected BmN cells. Virology 282, 348-356.
42. Ooi, B. G. & Miller, L. K. (1990). Transcription of the baculovirus polyhedrin gene reduces the levels of an antisense transcript initiated downstream. J Virol 63, 3126-3129.
43. Ooi, B. G., Rankin, C. & Miller, L. K. (1989). Downstream sequences augment transcription from the essential initiation site of a baculovirus polyhedrin gene. J Mol Biol 210, 721-736.
44. Pang, Y., Yu, J., Wang, L. & 7 other authors (2001). Sequence analysis of the Spodoptera litura multicapsid nucleopolyhedrovirus genome. Virology 287, 391-404.
45. Pijlman, G. P., Pruijssers, A. J. & Vlak, J. M. (2003). Identification of pif-2, a third conserved baculovirus gene required for per os infection of insects. J Gen Virol 84, 2041-2049.
46. Rankin, C., Ooi, B. G. & Miller, L. K. (1988). Eight base pairs encompassing the transcriptional start point are the major determinant for baculovirus polyhedrin gene expression. Gene 70, 39-49.
47. Theilmann, D. A., Chantler, J. K., Stewart, S., Flipsen, H. T. M., Vlak, J. M. & Crook, N. E. (1996). Characterization of a highly conserved baculovirus structural protein that is specific for occlusion-derived virions. Virology 218, 148-158.
48. Thiem, S. M. & Miller, L. K. (1990). Differential gene expression mediated by late, very late and hybrid baculovirus promoters. Gene 91, 87-94.
49. Todd, J. W., Pasarelli, A. L. & Miller, L. K. (1995). Eighteen baculovirus genes, including lef-11, p35, 39K, and p47, support late gene expression. J Virol 69, 968-974.
50. Toister-Achituv, M. & Faktor, O. (1997). Transcriptional analysis and promoter activity of the Spodoptera littoralis multicapsid nucleopolyhedrovirus ecdysteroid UDP-glucosyltransferase gene. J Gen Virol 78, 487-491.
51. Volkmann, L. E. (1997). Nucleopolyhedrovirus interactions with their insect hosts. Adv Virus Res 48, 313-348.
52. Wagner, E. K. (1983). Transcription patterns in HSV infections. Adv Viral Oncol 3, 239-270.
53. Weyer, U. & Possee, R. D. (1988). Functional analysis of the p10 gene 5′ leader sequence of the Autographa californica nuclear polyhedrosis virus. Nucleic Acids Res 16, 3635-3653.
54. Weyer, U. & Possee, R. D. (1989). Analysis of the promoter of the Autographa californica nuclear polyhedrosis virus p10 gene. J Gen Virol 70, 203-208.