H5N1 avian influenza re-emergence of Lake Qinghai: Phylogenetic and antigenic analyses of the newly isolated viruses and roles of migratory birds in virus circulation

Journal of General Virology

Volumn 89, Issue 3, 2008, Pages 697-702

  Wang, Guihua ^a,b   Zhan, Dawei ^c   Li, Laixing ^d   Lei, Fumin ^e   Liu, Bohua ^c   Liu, Di ^a,b   Xiao, Haixia ^a,b   Feng, Youjun ^a,b   Li, Jing ^c   Yang, Baoan ^c   Yin, Zuohua ^e   Song, Xiaohui ^a,b   Zhu, Xiaojia ^b,d   Cong, Yanlong ^f   Pu, Juan ^f   Wang, Jian ^e   Liu, Jinhua ^f   Gao, George F ^a   Zhu, Qingyu ^c  

^a INSTITUTE OF MICROBIOLOGY   (China)

^b UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

^c BEIJING INSTITUTE OF MICROBIOLOGY AND EPIDEMIOLOGY   (China)

^d NORTHWEST INSTITUTE OF PLATEAU BIOLOGY   (China)

^e INSTITUTE OF GEOLOGY AND GEOPHYSICS   (China)

^f CHINA AGRICULTURAL UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

ANTIGENICITY; ARTICLE; CHINA; EPIDEMIC; GENE SEQUENCE; INFLUENZA VIRUS; INFLUENZA VIRUS A H5N1; INFLUENZA VIRUS A QH05; INFLUENZA VIRUS A QH06; MIGRANT BIRD; MOLECULAR EVOLUTION; NONHUMAN; PATHOGENICITY; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE ANALYSIS; VIRUS INFECTION; VIRUS ISOLATION; VIRUS STRAIN; ANIMAL; AVIAN INFLUENZA; BIRD; BIRD DISEASE; CHICKEN; DNA SEQUENCE; DRUG ANTAGONISM; GENETICS; IMMUNOLOGY; ISOLATION AND PURIFICATION; MOUSE; PHYSIOLOGY; POPULATION MIGRATION; VIROLOGY; VIRUS GENOME;

AVES;

HEMAGGLUTININ, AVIAN INFLUENZA A VIRUS; INFLUENZA VIRUS HEMAGGLUTININ; SIALIDASE; UNCLASSIFIED DRUG;

ANIMAL MIGRATION; ANIMALS; BIRDS; CHICKENS; CHINA; DISEASE OUTBREAKS; GENOME, VIRAL; HEMAGGLUTININ GLYCOPROTEINS, INFLUENZA VIRUS; INFLUENZA A VIRUS, H5N1 SUBTYPE; INFLUENZA IN BIRDS; MICE; NEURAMINIDASE; PHYLOGENY; POULTRY DISEASES; SEQUENCE ANALYSIS, DNA;

EID: 42449131490     PISSN: 00221317     EISSN: None     Source Type: Journal    
DOI: 10.1099/vir.0.83419-0     Document Type: Article

References (37)

1. Becker, W. B. (1966). The isolation and classification of Tern virus: influenza A-Tern South Africa-1961. J Hyg (Lond) 64, 309-320.
2. Chen, W., Calvo, P. A., Malide, D., Gibbs, J., Schubert U., Bacik, I., Basta, S., O'Neill, R., Schickli, J. & other authors (2001). A novel influenza A virus mitochondrial protein that induces cell death. Nat Med 7, 1306-1312.
3. Chen, H., Smith, G. J., Zhang, S. Y., Qin, K., Wang, J., Li, K. S., Webster, R. G., Peiris, J. S. & Guan, Y. (2005). Avian flu: H5N1 virus outbreak in migratory waterfowl. Nature 436, 191-192.
4. Chen, H., Li, Y., Li, Z., Shi, J., Shinya, K., Deng, G., Qi, O., Tian, G., Fan, S. & other authors (2006). Properties and dissemination of H5N1 viruses isolated during an influenza outbreak in migratory waterfowl in western China. J Virol 80, 5976-5983.
5. Claas, E. C., Osterhaus, A. D., van Beek, R., De Jong, J. C., Rimmelzwaan, G. F., Senne, D. A., Krauss, S., Shortridge, K. F. & Webster, R. G. (1998). Human influenza A H5N1 virus related to a highly pathogenic avian influenza virus. Lancet 351, 472-477.
6. Coleman, J. R. (2007). The PB1-F2 protein of influenza A virus: increasing pathogenicity by disrupting alveolar macrophages. Virol J 4, 9.
7. Crawford, P. C., Dubovi, E. J., Castleman, W. L., Stephenson, I., Gibbs, E. P., Chen, L., Smith, C., Hill, R. C., Ferro, P. & other authors (2005). Transmission of equine influenza virus to dogs. Science 310, 482-485.
8. Enserink, M. & Kaiser, J. (2004). Virology. Avian flu finds new mammal hosts. Science 305, 1385.
9. FAO, OIE & WHO (2005). A Global Strategy for the Progressive Control of Highly Pathogenic Avian Influenza (HPA1).
10. Felsenstein, J. (1989). PHYLIP - Phylogeny inference package (version 3.2). Cladistics 5, 164-166.
11. Guan, Y., Shortridge, K. F., Krauss, S., Chin, P. S., Dyrting, K. C., Ellis, T. M., Webster, R. G. & Peiris, M. (2000). 119N2 influenza viruses possessing H5N1-like internal genomes continue to circulate in poultry in south-eastern China. J Virol 74, 9372-9380.
12. Hien, T. T., de Jong, M. & Farrar, J. (2004). Avian influenza-a challenge to global health care structures. N Engl J Med 351, 2363-2365.
13. Hinshaw, V. S., Webster, R. G. & Turner, B. (1980). The perpetuation of orthomyxoviruses and paramyxoviruses in Canadian waterfowl. Can J Microbiol 26, 622-629.
14. Keawcharoen, J., Oraveerakul, K., Kuiken, T., Fouchier, R. A., Amonsin, A., Payungporn, S., Noppompanth, S., Wattanodorn, S., Theambooniers, A. & other authors (2004). Avian influenza H5N1 in tigers and leopards. Emerg Infect Dis 10, 2189-2191.
15. Kilpatrick A. M., Chmura, A. A., Gibbons, D. W., Fleischer, R. C., Marra, P. P. & Daszak, P. (2006). Predicting the global spread of H5N1 avian influenza. Proc Natl Acad Sci U S A 103, 19368-19373.
16. Kuiken, T., Fouchier, R., Rimmelzwaan, G., Osterhaus, A. & Roeder, P. (2006). Feline friend or potential foe? Nature 440, 741-742.
17. Kumar, S., Tamura, K. & Nei, M. (2004). MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5, 150-163.
18. Liu, J., Xiao, H., Lei, F., Zhu, O., Qin, K., Zhang, X. W., Zhang, X. L., Zhao, D., Wang, G. & other authors (2005). Highly pathogenic H5N1 influenza virus infection in migratory birds. Science 309, 1206.
19. Normile, D. (2006). Avian intluenza. Evidence points to migratory birds in H5N1 spread. Science 311, 1225.
20. OIE (2004). OIE Manual of Diagnostic Tests and Vaccines for Terrestrial Animals. Paris, France: Office International des Epizooties.
21. Palese, P. (1977). The genes of influenza virus. Cell 10, 1-10.
22. Poland, G. A., Jacobson, R. M. & Targonski, P. V. (2007). Avian and pandemic influenza: an overview. Vaccine 25, 3057-3061.
23. Reed, L. J. & Muench, H. (1938). A simple method of estimating fifty per cent endpoints. Am J Hyg 27, 493-497.
24. Ronquist, F. & Huelsenbeck J. P. (2003). MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19, 1572-1574.
25. Smith, G. J., Fan, X. H., Wang, J., Li, K. S., Qin, K., Zhang, J. X., Vijaykrishna, D., Cheung, C. L., Huang, K. & other authors (2006a). Emergence and predominance of an H5N1 influenza variant in China. Proc Natl Acad Sci U S A 103, 16936-16941.
26. Smith, G. J., Naipospos, T. S., Nguyen, T. D., de Jong, M. D., Vijaykrishna, D., Usman, T. B., Hassan, S. S., Nguyen, T. V., Dao, T. V. & other authors (2006b). Evolution and adaptation of H5N1 influenza virus in avian and human hosts in Indonesia and Vietnam. Virology 350, 258-268.
27. Sturm-Ramirez, K. M., Ellis, T., Bousfield, B., Bissett L., Dyrting, K., Rehg, J. E., Poon, L., Guan, Y., Peiris, M. & Webster, R. G. (2004). Reemerging H5N1 influenza viruses in Hong Kong in 2002 are highly pathogenic to ducks. J Virol 78, 4892-4901.
28. Subbarao, K., Klimov, A., Katz, J., Regnery, H., Lim, W., Hall, H., Perdue, M., Swayne, D., Bender, C. & other authors (1998). Characterization of an avian influenza A (H5N1) virus isolated from a child with a fatal respiratory illness. Science 279, 393-396.
29. Swayne, D. E., Senne, D. A. & Beard, C. W. (1998). Avian influenza. In A Laboratory Manual for the Isolation and Identification of Avian Pathogens, pp. 150-155. Edited by D. E. Swayne. Kennett Square, PA: American Association of Avian Pathologists.
30. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
31. van Gils, J. A., Munster, V. J., Radersma, R., Liefhebber, D., Fouchier, R. A. & Klaassen, M. (2007). Hampered foraging and migratory performance in swans infected with low-pathogenic avian influenza A virus. PLoS ONE 2, e184.
32. Webster, R. & Hulse, D. (2005). Controlling avian flu at the source. Nature 435, 415-416.
33. Webster, R. G., Bean, W. J., Gorman, O. T., Chambers, T. M. & Kawaoka, Y. (1992). Evolution and ecology of influenza A viruses. Microbiol Rev 56, 152-179.
34. WHO (2005). Evolution of H5N1 avian influenza viruses in Asia. Emerg Infect Dis 11, 1515-1521.
35. WHO (2007). Cumulative number of confirmed human cases of avian influenza A/(H5N1) reported to WHO. (http://www.who.int/entity/csr/ disease/avian_influenza/country/cases_table_2007_08_23/en/index.html).
36. Zamarin, D., Garcia-Sastre, A., Xiao, X., Wang, R. & Palese, P. (2005). Influenza virus PB1-F2 protein induces cell death through mitochondrial ANT3 and VDAC1. PLoS Pathog 1, e4.
37. Zamarin, D., Ortigoza, M. B. & Palese, P. (2006). Influenza A virus PB1-F2 protein contributes to viral pathogenesis in mice. J Virol 80, 7976-7983.