메뉴 건너뛰기




Volumn 11, Issue 1, 2011, Pages

The enigmatic mitochondrial genome of Rhabdopleura compacta (Pterobranchia) reveals insights into selection of an efficient tRNA system and supports monophyly of Ambulacraria

Author keywords

codon reassignment; codon anticodon adaptation; deuterostome evolution; Hemichordata; Pterobranchia

Indexed keywords

ADAPTATION; EVOLUTIONARY BIOLOGY; GENE EXPRESSION; GENOMICS; INVERTEBRATE; MITOCHONDRIAL DNA; MOLECULAR ANALYSIS; MORPHOLOGY; MUTATION; NATURAL SELECTION; PHYLOGENETICS; PHYLOGENY; PROTEIN; RNA;

EID: 79956189018     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/1471-2148-11-134     Document Type: Article
Times cited : (20)

References (64)
  • 2
    • 0008477702 scopus 로고
    • Vorläufige Mitteilungen über Atubaria heterolopba gen. nov. sp. nov., einen in freiem Zustand aufgefundenen Pterobranchier aus dem Stillen Ozean
    • Vorläufige Mitteilungen über Atubaria heterolopba gen. nov. sp. nov., einen in freiem Zustand aufgefundenen Pterobranchier aus dem Stillen Ozean. T Sato, Zool Anz 1936 115 97 106
    • (1936) Zool Anz , vol.115 , pp. 97-106
    • Sato, T.1
  • 3
    • 0038157597 scopus 로고
    • Smaller Coelomate Groups: Hemichordata
    • New York: McGraw-Hill Book Company
    • Smaller Coelomate Groups: Hemichordata. LH Hyman, The Invertebrates New York: McGraw-Hill Book Company 1959 5 72 207
    • (1959) The Invertebrates , vol.5 , pp. 72-207
    • Hyman, L.H.1
  • 4
    • 0029268667 scopus 로고
    • The phylogenetic position of the pterobranch hemichordates based on 18S rDNA sequence data
    • 10.1006/mpev.1995.1007
    • The phylogenetic position of the pterobranch hemichordates based on 18S rDNA sequence data. KM Halanych, Mol Phyl Evol 1995 4 72 76 10.1006/mpev.1995. 1007
    • (1995) Mol Phyl Evol , vol.4 , pp. 72-76
    • Halanych, K.M.1
  • 6
    • 0036097948 scopus 로고    scopus 로고
    • Evaluating hypotheses of deuterostome phylogeny and chordate evolution with new LSU and SSU ribosomal DNA data
    • Evaluating hypotheses of deuterostome phylogeny and chordate evolution with new LSU and SSU ribosomal DNA data. CJ Winchell J Sullivan CB Cameron BJ Swalla J Mallatt, Mol Biol Evol 2002 19 762 776 11961109 (Pubitemid 34521307)
    • (2002) Molecular Biology and Evolution , vol.19 , Issue.5 , pp. 762-776
    • Winchell, C.J.1    Sullivan, J.2    Cameron, C.B.3    Swalla, B.J.4    Mallatt, J.5
  • 7
    • 0000378233 scopus 로고
    • Ber die systematische Stellung von Balanoglossus
    • ber die systematische Stellung von Balanoglossus. VE Metschnikoff, Zool Anz 1881 4 139 157
    • (1881) Zool Anz , vol.4 , pp. 139-157
    • Metschnikoff, V.E.1
  • 8
    • 25144447548 scopus 로고    scopus 로고
    • Poriferan mtDNA and animal phylogeny based on mitochondrial gene arrangements
    • DOI 10.1080/10635150500221044
    • Poriferan mtDNA and animal phylogeny based on mitochondrial gene arrangements. DV Lavrov BF Lang, Systematic Biol 2005 54 651 659 10.1080/10635150500221044 (Pubitemid 41356474)
    • (2005) Systematic Biology , vol.54 , Issue.4 , pp. 651-659
    • Lavrov, D.V.1    Lang, B.F.2
  • 9
    • 10944225682 scopus 로고    scopus 로고
    • Evolution of the mitochondrial genome in cephalochordata as inferred from complete nucleotide sequences from two Epigonichthys species
    • DOI 10.1007/s00239-004-0238-x
    • Evolution of the mitochondrial genome in cephalochordata as inferred from complete nucleotide sequences from two Epigonichthys species. M Nohara M Nishida M Miya T Nishikawa, J Mol Biol 2005 60 526 537 (Pubitemid 40754793)
    • (2005) Journal of Molecular Evolution , vol.60 , Issue.4 , pp. 526-537
    • Nohara, M.1    Nishida, M.2    Miya, M.3    Nishikawa, T.4
  • 11
    • 77953140322 scopus 로고    scopus 로고
    • Mitochondrial genome evolution in Ophiuroides, Echinoidea, and Holthuroidea: Insights in phylogenetic relationships of Echinodermata
    • 10.1016/j.ympev.2010.01.035
    • Mitochondrial genome evolution in Ophiuroides, Echinoidea, and Holthuroidea: Insights in phylogenetic relationships of Echinodermata. M Perseke D Bernhard G Fritzsch F Brümmer PF Stadler M Schlegel, Mol Phyl Evol 2010 56 1 201 211 10.1016/j.ympev.2010.01.035
    • (2010) Mol Phyl Evol , vol.56 , Issue.1 , pp. 201-211
    • Perseke, M.1    Bernhard, D.2    Fritzsch, G.3    Brümmer, F.4    Stadler, P.F.5    Schlegel, M.6
  • 12
    • 0033561361 scopus 로고    scopus 로고
    • Animal mitochondrial genomes
    • DOI 10.1093/nar/27.8.1767
    • Animal mitochondrial genomes. JL Boore, Nucleic Acids Res 1999 27 1767 1780 10.1093/nar/27.8.1767 10101183 (Pubitemid 29209617)
    • (1999) Nucleic Acids Research , vol.27 , Issue.8 , pp. 1767-1780
    • Boore, J.L.1
  • 13
    • 77953136217 scopus 로고    scopus 로고
    • Erosion of phylogenetic signal in tunicate mitochondrial genomes on different levels of analysis
    • 10.1016/j.ympev.2010.03.011. 20302953
    • Erosion of phylogenetic signal in tunicate mitochondrial genomes on different levels of analysis. T Stach A Braband L Podsiadlowski, Mol Phylogenet Evol 2010 55 860 870 10.1016/j.ympev.2010.03.011 20302953
    • (2010) Mol Phylogenet Evol , vol.55 , pp. 860-870
    • Stach, T.1    Braband, A.2    Podsiadlowski, L.3
  • 14
    • 67649523528 scopus 로고    scopus 로고
    • The mitochondrial genome structure of Xenoturbella bocki (phylum Xenoturbellida) is ancestral within the deuterostomes
    • 10.1186/1471-2148-9-107. 19450249
    • The mitochondrial genome structure of Xenoturbella bocki (phylum Xenoturbellida) is ancestral within the deuterostomes. SJ Bourlat O Rota-Stabelli R Lanfear MJ Telford, BMC Evol Biol 2009 9 107 10.1186/1471-2148-9-107 19450249
    • (2009) BMC Evol Biol , vol.9 , pp. 107
    • Bourlat, S.J.1    Rota-Stabelli, O.2    Lanfear, R.3    Telford, M.J.4
  • 15
    • 44249092961 scopus 로고    scopus 로고
    • An Extensive Study of Mutation and Selection on the Wobble Nucleotide in tRNA Anticodons in Fungal Mitochondrial Genomes
    • 10.1007/s00239-008-9102-8. 18401633
    • An Extensive Study of Mutation and Selection on the Wobble Nucleotide in tRNA Anticodons in Fungal Mitochondrial Genomes. M Carullo X Xia, J Mol Evol 2008 66 484 493 10.1007/s00239-008-9102-8 18401633
    • (2008) J Mol Evol , vol.66 , pp. 484-493
    • Carullo, M.1    Xia, X.2
  • 16
    • 48349147235 scopus 로고    scopus 로고
    • The cost of wobble translation in fungal mitochondrial genomes: Integration of two traditional hypotheses
    • 10.1186/1471-2148-8-211. 18638409
    • The cost of wobble translation in fungal mitochondrial genomes: integration of two traditional hypotheses. X Xia, BMC Evol Biol 2008 8 211 10.1186/1471-2148-8-211 18638409
    • (2008) BMC Evol Biol , vol.8 , pp. 211
    • Xia, X.1
  • 17
    • 13444249920 scopus 로고    scopus 로고
    • Mutation and selection on the anticodon of tRNA genes in vertebrate mitochondrial genomes
    • DOI 10.1016/j.gene.2004.11.019
    • Mutation and selection on the anticodon of tRNA genes in vertebrate mitochondrial genomes. X Xia, Gene 2005 345 13 20 10.1016/j.gene.2004.11.019 15716092 (Pubitemid 40208496)
    • (2005) Gene , vol.345 , Issue.SPEC. ISS. 1 , pp. 13-20
    • Xia, X.1
  • 18
    • 2942597865 scopus 로고    scopus 로고
    • Anticodon and wobble evolution
    • DOI 10.1016/j.gene.2004.02.028, PII S0378111904000939
    • Anticodon and wobble evolution. KL Tong JT Wong, Gene 2004 333 169 177 15177692 (Pubitemid 38737363)
    • (2004) Gene , vol.333 , Issue.1-2 , pp. 169-177
    • Tong, K.-L.1    Wong, J.T.-F.2
  • 19
    • 0034822301 scopus 로고    scopus 로고
    • Genetic code variations in mitochondria: tRNA as a major determinant of genetic code plasticity
    • DOI 10.1007/s002390010221
    • Genetic code variations in mitochondria: tRNA as a major determinant of genetic code plasticity. S Yokobori T Suzuki K Watanabe, J Mol Evol 2001 53 314 326 10.1007/s002390010221 11675591 (Pubitemid 32889539)
    • (2001) Journal of Molecular Evolution , vol.53 , Issue.4-5 , pp. 314-326
    • Yokobori, S.-I.1    Suzuki, T.2    Watanabe, K.3
  • 20
    • 0002365884 scopus 로고
    • Modified nucleotides and codon recognition
    • Washington, MA: ASM Press Soll D, RajBhandary U
    • Modified nucleotides and codon recognition. S Yokoyama S Nishimura, tRNA: Structure, Biosynthesis and Function Washington, MA: ASM Press, Soll D, RajBhandary U, 1995 207 223
    • (1995) TRNA: Structure, Biosynthesis and Function , pp. 207-223
    • Yokoyama, S.1    Nishimura, S.2
  • 21
    • 0025941139 scopus 로고
    • The selection-mutation-drift theory of synonymous codon usage
    • 1752426
    • The selection-mutation-drift theory of synonymous codon usage. M Bulmer, Genetics 1991 129 897 907 1752426
    • (1991) Genetics , vol.129 , pp. 897-907
    • Bulmer, M.1
  • 22
    • 0023126266 scopus 로고
    • Coevolution of codon usage and transfer RNA abundance
    • DOI 10.1038/325728a0
    • Coevolution of codon usage and transfer RNA abundance. M Bulmer, Nature 1987 325 6106 728 730 10.1038/325728a0 2434856 (Pubitemid 17054044)
    • (1987) Nature , vol.325 , Issue.6106 , pp. 728-730
    • Bulmer, M.1
  • 23
    • 19044389661 scopus 로고    scopus 로고
    • Evidence for multiple reversals of asymmetric mutational constraints during the evolution of the mitochondrial genome of metazoa, and consequences for phylogenetic inferences
    • DOI 10.1080/10635150590947843
    • Evidence for multiple reversals of asymmetric mutational constraints during the evolution of the mitochondrial genome of Metazoa, and consequences for phylogenetic inferences. A Hassanin N Léger J Deutsch, Syst Biol 2005 54 277 298 10.1080/10635150590947843 16021696 (Pubitemid 40707808)
    • (2005) Systematic Biology , vol.54 , Issue.2 , pp. 277-298
    • Hassanin, A.1    Leger, N.2    Deutsch, J.3
  • 24
    • 16644398041 scopus 로고    scopus 로고
    • Detecting gradients of asymmetry in site-specific substitutions in mitochondrial genomes
    • 10.1089/dna.2004.23.707. 15585129
    • Detecting gradients of asymmetry in site-specific substitutions in mitochondrial genomes. NM Krishnan H Seligmann SZ Raina DD Pollock, DNA Cell Biol 2004 23 707 714 10.1089/dna.2004.23.707 15585129
    • (2004) DNA Cell Biol , vol.23 , pp. 707-714
    • Krishnan, N.M.1    Seligmann, H.2    Raina, S.Z.3    Pollock, D.D.4
  • 25
    • 0031950474 scopus 로고    scopus 로고
    • Asymmetrical directional mutation pressure in the mitochondrial genome of mammals
    • Asymmetrical directional mutation pressure in the mitochondrial genome of mammals. A Reyes C Gissi G Pesole C Saccone, Mol Biol Evol 1998 15 957 966 9718723 (Pubitemid 28364449)
    • (1998) Molecular Biology and Evolution , vol.15 , Issue.8 , pp. 957-966
    • Reyes, A.1    Gissi, C.2    Pesole, G.3    Saccone, C.4
  • 26
    • 0032524384 scopus 로고    scopus 로고
    • Analyzing genomes with cumulative skew diagrams
    • DOI 10.1093/nar/26.10.2286
    • Analyzing genomes with cumulative skew diagrams. A Grigoriev, Nucleic Acids Res 1998 26 2286 2290 10.1093/nar/26.10.2286 9580676 (Pubitemid 28297325)
    • (1998) Nucleic Acids Research , vol.26 , Issue.10 , pp. 2286-2290
    • Grigoriev, A.1
  • 27
    • 0030976320 scopus 로고    scopus 로고
    • Strand asymmetries in DNA evolution
    • DOI 10.1016/S0168-9525(97)01118-9, PII S0168952597011189
    • Strand asymmetries in DNA evolution. MP Francino H Ochman, Trends Genet 1997 13 240 245 10.1016/S0168-9525(97)01118-9 9196330 (Pubitemid 27261265)
    • (1997) Trends in Genetics , vol.13 , Issue.6 , pp. 240-245
    • Francino, M.P.1    Ochman, H.2
  • 28
    • 0025344222 scopus 로고
    • A sensitive genetic assay for the detection of cytosine deamination: Determination of rate constants and the activation energy
    • A sensitive genetic assay for the detection of cytosine deamination: determination of rate constants and the activation energy. LA Frederico TA Kunkel BR Shaw, Biochemistry 1990 29 2532 2537 10.1021/bi00462a015 2185829 (Pubitemid 20100849)
    • (1990) Biochemistry , vol.29 , Issue.10 , pp. 2532-2537
    • Frederico, L.A.1    Kunkel, T.A.2    Ramsay Shaw, B.3
  • 29
    • 33646058542 scopus 로고    scopus 로고
    • The complete mitochondrial genomes of the sea lily Gymnocrinus richeri and the feather star Phanogenia gracilis: Signature nucleotide bias and unique nad4L gene rearrangement within crinoids
    • 10.1016/j.ympev.2005.11.004. 16359875
    • The complete mitochondrial genomes of the sea lily Gymnocrinus richeri and the feather star Phanogenia gracilis: signature nucleotide bias and unique nad4L gene rearrangement within crinoids. A Scouras JM Smith, Mol Phylogenet Evol 2006 39 323 334 10.1016/j.ympev.2005.11.004 16359875
    • (2006) Mol Phylogenet Evol , vol.39 , pp. 323-334
    • Scouras, A.1    Smith, J.M.2
  • 30
    • 0031770677 scopus 로고    scopus 로고
    • The mitochondrial genome of the hemichordate Balanoglossus carnosus and the evolution of deuterostome mitochondria
    • The mitochondrial genome of the hemichordata Balanoglossus carnosus and the evolution of deuterostome mitochondria. J Castresana G Feldmaier-Fuchs S Yokobori N Satoh S Päabo, Genetics 1998 150 1115 1123 9799263 (Pubitemid 28510039)
    • (1998) Genetics , vol.150 , Issue.3 , pp. 1115-1123
    • Castresana, J.1    Feldmaier-Fuchs, G.2    Yokobori, S.-I.3    Satoh, N.4    Paabo, S.5
  • 32
    • 0019444843 scopus 로고
    • TRNA punctuation model of RNA processing in human mitochondria
    • DOI 10.1038/290470a0
    • tRNA punctuation model of RNA processing in human mitochondria. D Ojala DJ Montoya G Attardi, Nature 1981 290 470 474 10.1038/290470a0 7219536 (Pubitemid 11159076)
    • (1981) Nature , vol.290 , Issue.5806 , pp. 470-474
    • Ojala, D.1    Montoya, J.2    Attardi, G.3
  • 33
    • 26944500840 scopus 로고    scopus 로고
    • Replication of mitochondrial DNA occurs by strand displacement with alternative light-strand origins, not via a strand-coupled mechanism
    • DOI 10.1101/gad.1352105
    • Replication of mitochondrial DNA occurs by strand displacement with alternative light-strand origins, not via a strand-coupled mechanism. TA Brown C Cecconi AN Tkachuk, Genes Dev 2005 19 2466 2476 10.1101/gad.1352105 16230534 (Pubitemid 41483694)
    • (2005) Genes and Development , vol.19 , Issue.20 , pp. 2466-2476
    • Brown, T.A.1    Cecconi, C.2    Tkachuk, A.N.3    Bustamante, C.4    Clayton, D.A.5
  • 34
    • 0021282458 scopus 로고
    • Structural and replicative forms of mitochondrial DNA in tissues from adult and senescent BALB/c mice and Fischer 344 rats
    • DOI 10.1016/0047-6374(84)90170-2
    • Structural and replicative forms of mitochondrial DNA in tissues from adult and senescent BALB/c mice and Fischer 344 rats. L Piká KJ Bulpitt R Meyer, Mech. Ageing Dev 1984 26 113 131 10.1016/0047-6374(84)90170-2 6748754 (Pubitemid 14087298)
    • (1984) Mechanisms of Ageing and Development , vol.26 , Issue.1 , pp. 113-131
    • Piko, L.1    Bulpitt, K.J.2    Meyer, R.3
  • 35
    • 0016364738 scopus 로고
    • Evidence for discontinuous replication of circular mitochondrial DNA molecules from Novikoff rat ascites hepatoma cells
    • 10.1083/jcb.61.1.14. 4362136
    • Evidence for discontinuous replication of circular mitochondrial DNA molecules from Novikoff rat ascites hepatoma cells. K Koike DR Wolstenholme, J. Cell Biol 1974 61 14 25 10.1083/jcb.61.1.14 4362136
    • (1974) J. Cell Biol , vol.61 , pp. 14-25
    • Koike, K.1    Wolstenholme, D.R.2
  • 36
    • 0038825342 scopus 로고    scopus 로고
    • Response: The mitochondrial DNA replication bubble has not burst
    • DOI 10.1016/S0968-0004(03)00133-6
    • Response: The mitochondrial DNA replication bubble has not burst. IJ Holt HT Jacobs, Trends Biochem. Sci 2003 28 355 356 10.1016/S0968-0004(03)00133-6 12878001 (Pubitemid 36851615)
    • (2003) Trends in Biochemical Sciences , vol.28 , Issue.7 , pp. 355-356
    • Holt, I.J.1    Jacobs, H.T.2
  • 37
    • 0037112343 scopus 로고    scopus 로고
    • Biased incorporation of ribonucleotides on the mitochondrial L-strand accounts for apparent strand-asymmetric DNA replication
    • DOI 10.1016/S0092-8674(02)01075-9
    • Biased incorporation of ribonucleotides on the mitochondrial L-strand accounts for apparent strand-asymmetric DNA replication. MY Yang M Bowmaker A Reyes L Vergani P Angeli E Gringeri HT Jacobs IJ Holt, Cell 2002 111 495 505 10.1016/S0092-8674(02)01075-9 12437923 (Pubitemid 35356555)
    • (2002) Cell , vol.111 , Issue.4 , pp. 495-505
    • Yang, M.Y.1    Bowmaker, M.2    Reyes, A.3    Vergani, L.4    Angeli, P.5    Gringeri, E.6    Jacobs, H.T.7    Holt, I.J.8
  • 38
    • 0034598918 scopus 로고    scopus 로고
    • Coupled leading and lagging-strand synthesis of mammalian mitochondrial DNA
    • 10.1016/S0092-8674(00)80688-1. 10721989
    • Coupled leading and lagging-strand synthesis of mammalian mitochondrial DNA. IJ Holt HE Lorimer HT Jacobs, Cell 2000 100 515 524 10.1016/S0092-8674(00) 80688-1 10721989
    • (2000) Cell , vol.100 , pp. 515-524
    • Holt, I.J.1    Lorimer, H.E.2    Jacobs, H.T.3
  • 39
    • 20444428352 scopus 로고    scopus 로고
    • A bidirectional origin of replication maps to the major noncoding region of human mitochondrial DNA
    • DOI 10.1016/j.molcel.2005.05.002, PII S1097276505013080
    • A bidirectional origin of replication maps to the major noncoding region of human mitochondrial DNA. T Yasukawa MY Yang HT Jacobs IJ Holt, Mol. Cell 2005 18 651 662 10.1016/j.molcel.2005.05.002 15949440 (Pubitemid 40804801)
    • (2005) Molecular Cell , vol.18 , Issue.6 , pp. 651-662
    • Yasukawa, T.1    Yang, M.-Y.2    Jacobs, H.T.3    Holt, I.J.4
  • 41
    • 33747850241 scopus 로고    scopus 로고
    • GenDecoder: Genetic code prediction for metazoan mitochondria
    • DOI 10.1093/nar/gkl044
    • GenDecoder: genetic code prediction for metazoan mitochondria. F Abascal R Zardoya D Posada, Nucleic Acids Res 2006 34 389 393 10.1093/nar/gkl044 (Pubitemid 44529800)
    • (2006) Nucleic Acids Research , vol.34 , Issue.WEB. SERV. ISS.
    • Abascal, F.1    Zardoya, R.2    Posada, D.3
  • 42
    • 0032488826 scopus 로고    scopus 로고
    • A novel wobble rule found in starfish mitochondria
    • 10.1074/jbc.273.6.3363. 9452455
    • A novel wobble rule found in starfish mitochondria. S Matsuyama T Ueda PF Crain JA McCloskey K Watanabe, J Biol Chem 1998 273 3363 3368 10.1074/jbc.273.6.3363 9452455
    • (1998) J Biol Chem , vol.273 , pp. 3363-3368
    • Matsuyama, S.1    Ueda, T.2    Crain, P.F.3    McCloskey, J.A.4    Watanabe, K.5
  • 43
    • 0032581682 scopus 로고    scopus 로고
    • 7-methylguanosine at the anticodon wobble position of squid mitochondrial tRNA(Ser)GCU: Molecular basis for assignment of AGA/AGG codons as serine in invertebrate mitochondria
    • DOI 10.1016/S0167-4781(98)00099-2, PII S0167478198000992
    • 7-Methylguanosine at the anticodon wobble position of squid mitochondrial tRNA(Ser)GCU: Molecular basis for assignment of AGA/AGG codons as serine in invertebrate mitochondria. K Tomita T Ueda K Watanabe, Biochim Biophys Acta 1998 1399 78 82 9714749 (Pubitemid 28374920)
    • (1998) Biochimica et Biophysica Acta - Gene Structure and Expression , vol.1399 , Issue.1 , pp. 78-82
    • Tomita, K.1    Ueda, T.2    Watanabe, K.3
  • 44
    • 0033563310 scopus 로고    scopus 로고
    • An extra tRNAGly(U*CU) found in ascidian mitochondria responsible for decoding non-universal codons AGA/AGG as glycine
    • 10.1093/nar/27.12.2554. 10352185
    • An extra tRNAGly(U*CU) found in ascidian mitochondria responsible for decoding non-universal codons AGA/AGG as glycine. A Kondow T Suzuki S Yokobori T Ueda K Watanabe, Nucleic Acids Res 1999 27 2554 2559 10.1093/nar/27.12.2554 10352185
    • (1999) Nucleic Acids Res , vol.27 , pp. 2554-2559
    • Kondow, A.1    Suzuki, T.2    Yokobori, S.3    Ueda, T.4    Watanabe, K.5
  • 45
    • 0035670709 scopus 로고    scopus 로고
    • A mechanism for stop codon recognition by the ribosome: A bioinformatic approach
    • A mechanism for stop codon recognition by the ribosome: A bioinformatic approach. V Ivanov A Beniaminov A Mikheyev E Minyat, RNA 2001 7 1683 1692 11780625 (Pubitemid 34042283)
    • (2001) RNA , vol.7 , Issue.12 , pp. 1683-1692
    • Ivanov, V.1    Beniaminov, A.2    Mikheyev, A.3    Minyat, E.4
  • 46
    • 0026574207 scopus 로고
    • Recent evidence for evolution of the genetic code
    • 1579111
    • Recent evidence for evolution of the genetic code. S Osawa ST Jukes K Watanabe A Muto, Microbiol Rev 1992 56 229 264 1579111
    • (1992) Microbiol Rev , vol.56 , pp. 229-264
    • Osawa, S.1    Jukes, S.T.2    Watanabe, K.3    Muto, A.4
  • 47
    • 33646737852 scopus 로고    scopus 로고
    • Parallel evolution of the genetic code in arthropod mitochondrial genomes
    • 10.1371/journal.pbio.0040127. 16620150
    • Parallel evolution of the genetic code in arthropod mitochondrial genomes. F Abascal D Posada RD Knight R Zardoya, PLOS Biol 2006 4 127 10.1371/journal.pbio.0040127 16620150
    • (2006) PLOS Biol , vol.4 , pp. 5127
    • Abascal, F.1    Posada, D.2    Knight, R.D.3    Zardoya, R.4
  • 48
    • 0029069238 scopus 로고
    • Nucleotide sequence and gene organization of the starfish Asterina pectinifera mitochondrial genome
    • 7672576
    • Nucleotide sequence and gene organization of the starfish Asterina pectinifera mitochondrial genome. S Asakawa H Himeno K Miura K Watanabe, Genetics 1995 140 1047 1060 7672576
    • (1995) Genetics , vol.140 , pp. 1047-1060
    • Asakawa, S.1    Himeno, H.2    Miura, K.3    Watanabe, K.4
  • 49
    • 0028332057 scopus 로고
    • Transfer RNA mutation and the malleability of the genetic code
    • DOI 10.1006/jmbi.1994.1094
    • Transfer RNA mutation and the malleability of the genetic code. DW Schultz M Yarus, J Mol Biol 1994 235 1377 1380 10.1006/jmbi.1994.1094 8107079 (Pubitemid 24150392)
    • (1994) Journal of Molecular Biology , vol.235 , Issue.5 , pp. 1377-1380
    • Schultz, D.W.1    Yarus, M.2
  • 50
    • 0030138792 scopus 로고    scopus 로고
    • On Malleability in the Genetic Code
    • On malleability in the genetic code. DW Schultz M Yarus, J Mol Evol 1996 42 597 601 10.1007/BF02352290 8662012 (Pubitemid 126425602)
    • (1996) Journal of Molecular Evolution , vol.42 , Issue.5 , pp. 597-601
    • Schultz, D.W.1    Yarus, M.2
  • 51
    • 0242417617 scopus 로고    scopus 로고
    • Comparative evolutionary genomics unveils the molecular mechanism of reassignment of the CTG condon in Candida spp
    • DOI 10.1101/gr.811003
    • Comparative evolutionary genomics unveils the molecular mechanism of reassignment of the CTG codon in Candida spp. SE Massey G Moura P Beltrao R Almeida JR Garey MF Tuite MAS Santos, Genome Res 2003 13 544 557 10.1101/gr.811003 12670996 (Pubitemid 36511914)
    • (2003) Genome Research , vol.13 , Issue.4 , pp. 544-557
    • Massey, S.E.1    Moura, G.2    Beltrao, P.3    Almeida, R.4    Garey, J.R.5    Tuite, M.F.6    Santos, M.A.S.7
  • 52
    • 0031180638 scopus 로고    scopus 로고
    • Further Comments on Codon Reassignment
    • 10.1007/PL00006192. 9211725
    • Further Comments on Codon Reassignment. TH Jukes S Osawa, J Mol Evol 1997 45 1 8 10.1007/PL00006192 9211725
    • (1997) J Mol Evol , vol.45 , pp. 1-8
    • Jukes, T.H.1    Osawa, S.2
  • 53
    • 78049458727 scopus 로고    scopus 로고
    • Modeling compositional dynamics based on GC and purine contents of protein-coding sequences
    • 10.1186/1745-6150-5-63. 21059261
    • Modeling compositional dynamics based on GC and purine contents of protein-coding sequences. Z Zhang J Yu, Biology Direct 2010 5 63 10.1186/1745-6150-5-63 21059261
    • (2010) Biology Direct , vol.5 , pp. 63
    • Zhang, Z.1    Yu, J.2
  • 55
    • 1642546958 scopus 로고    scopus 로고
    • Complete mitochondrial genome DNA sequence for two ophiuroids and a holothuroid: The utility of protein gene sequence and gene maps in the analyses of deep deuterostome phylogeny
    • DOI 10.1016/j.ympev.2003.07.005
    • Complete mitochondrial genome DNA sequence for two ophiuroids and a holothuroid: the utility of protein gene sequence and gene maps in the analyses of deep deuterostome phylogeny. A Scouras K Beckenbach A Arndt JM Smith, Mol. Phylogenet. Evol 2004 31 50 65 10.1016/j.ympev.2003.07.005 15019608 (Pubitemid 38403320)
    • (2004) Molecular Phylogenetics and Evolution , vol.31 , Issue.1 , pp. 50-65
    • Scouras, A.1    Beckenbach, K.2    Arndt, A.3    Smith, M.J.4
  • 56
    • 0030854739 scopus 로고    scopus 로고
    • TRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
    • DOI 10.1093/nar/25.5.955
    • tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. TM Lowe SR Eddy, Nucleic Acids Res 1997 25 955 964 10.1093/nar/25.5.955 9023104 (Pubitemid 27298263)
    • (1997) Nucleic Acids Research , vol.25 , Issue.5 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 57
    • 0028956546 scopus 로고
    • Properties of a general model of DNA evolution under no-strand bias conditions
    • 10.1007/BF00163237. 7723059
    • Properties of a general model of DNA evolution under no-strand bias conditions. JR Lobry, J Mol Evol 1995 40 326 330 10.1007/BF00163237 7723059
    • (1995) J Mol Evol , vol.40 , pp. 326-330
    • Lobry, J.R.1
  • 58
    • 33846057724 scopus 로고    scopus 로고
    • NCBI reference sequences (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins
    • 10.1093/nar/gkl842. 17130148
    • NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. KD Pruitt T Tatusova DR Maglott, Nucleic Acids Res 2007 35 61 D65 10.1093/nar/gkl842 17130148
    • (2007) Nucleic Acids Res , vol.35
    • Pruitt, K.D.1    Tatusova, T.2    Maglott, D.R.3
  • 60
    • 33847062375 scopus 로고    scopus 로고
    • A common origin of complex life cycles in parasitic flatworms: Evidence from the complete mitochondrial genome of Microcotyle sebastis
    • 10.1186/1471-2148-7-11. 17270057
    • A common origin of complex life cycles in parasitic flatworms: evidence from the complete mitochondrial genome of Microcotyle sebastis. JK Park KH Kim SH Kang JH Kim KS Eom DTJ Littlewood, BMC Evol Biol 2007 7 11 10.1186/1471-2148-7-11 17270057
    • (2007) BMC Evol Biol , vol.7 , pp. 11
    • Park, J.K.1    Kim, K.H.2    Kang, S.H.3    Kim, J.H.4    Eom, K.S.5    Littlewood, D.T.J.6
  • 61
    • 28244455890 scopus 로고    scopus 로고
    • The mitochondrial genome of Xiphinema americanum sensu stricto (Nematoda: Enoplea): Considerable economization in the length and structural features of encoded genes
    • DOI 10.1007/s00239-005-0102-7
    • The mitochondrial genome of Xiphinema americanum sensu stricto (Nematoda: enoplea): Considerable economization in the length and structural features of encoded genes. Y He J Jones M Armstrong F Lamberti M Moens, J Mol Evol 2005 61 819 833 10.1007/s00239-005-0102-7 16315110 (Pubitemid 41706029)
    • (2005) Journal of Molecular Evolution , vol.61 , Issue.6 , pp. 819-833
    • He, Y.1    Jones, J.2    Armstrong, M.3    Lamberti, F.4    Moens, M.5
  • 62
    • 0034623005 scopus 로고    scopus 로고
    • T-Coffee: A novel method for multiple sequence alignments
    • 10.1006/jmbi.2000.4042. 10964570
    • T-Coffee: a novel method for multiple sequence alignments. C Notredame D Higgins J Heringa, J Mol Biol 2000 302 205 217 10.1006/jmbi.2000.4042 10964570
    • (2000) J Mol Biol , vol.302 , pp. 205-217
    • Notredame, C.1    Higgins, D.2    Heringa, J.3
  • 63
    • 0242578620 scopus 로고    scopus 로고
    • A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood
    • DOI 10.1080/10635150390235520
    • A simple, fast and accurate method to estimate large phylogenies by maximum-likelihood. S Guindon O Gascuel, Syst Biol 2003 52 696 704 10.1080/10635150390235520 14530136 (Pubitemid 37365050)
    • (2003) Systematic Biology , vol.52 , Issue.5 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 64
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • DOI 10.1093/bioinformatics/btg180
    • MrBayes 3: Bayesian phylogenetic inference under mixed models. F Ronquist JP Huelsenbeck, Bioinformatics 2003 19 1572 1574 10.1093/bioinformatics/btg180 12912839 (Pubitemid 37038874)
    • (2003) Bioinformatics , vol.19 , Issue.12 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.