Method to reconstruct neuronal action potential train from two-photon calcium imaging

Journal of Biomedical Optics

Volumn 15, Issue 6, 2010, Pages

  Quan, Tingwei ^a,b   Liu, Xiuli ^a   Lv, Xiaohua ^a   Chen, Wei R ^c   Zeng, Shaoqun ^a  

^a HUAZHONG UNIVERSITY OF SCIENCE AND TECHNOLOGY   (China)

^b HUBEI UNIVERSITY OF EDUCATION   (China)

^c UNIVERSITY OF TEXAS MEDICAL SCHOOL   (United States)

Author keywords

action potential firing; calcium fluorescence transient; multiscale filter; template convolution

Indexed keywords

ACTION POTENTIALS; CALCIUM IMAGING; EVENT DETECTION; EXPERIMENTAL DATA PROCESSING; FLUORESCENCE TRANSIENTS; HIGH FREQUENCY; INTRACELLULAR CALCIUM; MULTISCALE FILTER; NEURONAL CIRCUITS; NON-LINEAR RELATIONSHIPS; OPERATING PRINCIPLES; SMALL POPULATION; TEMPLATE CONVOLUTION; TWO PHOTON;

CONVOLUTION; DATA HANDLING; ELECTROPHYSIOLOGY; FLUORESCENCE; TRANSIENTS;

CALCIUM;

CALCIUM;

ACTION POTENTIAL; ALGORITHM; ANIMAL; ARTICLE; BRAIN; CALCIUM SIGNALING; CELL CULTURE; COMPUTER ASSISTED DIAGNOSIS; EVALUATION; INSTRUMENTATION; METABOLISM; METHODOLOGY; MULTIPHOTON MICROSCOPY; NERVE CELL; NEWBORN; PHYSIOLOGY; RAT; VOLTAGE SENSITIVE DYE IMAGING; WISTAR RAT;

ACTION POTENTIALS; ALGORITHMS; ANIMALS; ANIMALS, NEWBORN; BRAIN; CALCIUM; CALCIUM SIGNALING; CELLS, CULTURED; IMAGE INTERPRETATION, COMPUTER-ASSISTED; MICROSCOPY, FLUORESCENCE, MULTIPHOTON; NEURONS; RATS; RATS, WISTAR; VOLTAGE-SENSITIVE DYE IMAGING;

EID: 79955978164     PISSN: 10833668     EISSN: 15602281     Source Type: Journal    
DOI: 10.1117/1.3505021     Document Type: Conference Paper

References (36)

1. C. Stosiek, O. Garaschuk, K. Holthoff, and A. Konnerth, " In vivo two-photon calcium imaging of neuronal networks.," Proc. Natl. Acad. Sci. U.S.A. 100 (12), 7319-7324 (2003). 10.1073/pnas.1232232100 (Pubitemid 36706436)
2. G. J. Augustine, F. Santamaria, and K. Tanaka, " Local calcium signaling in neurons.," Neuron 40 (2), 331-346 (2003). 10.1016/S0896- 6273(03)00639-1 (Pubitemid 37244099)
3. K. Ohki, S. Chung, Y. H. Ch'Ng, P. Kara, and R. C. Reid, " Functional imaging with cellular resolution reveals precise micro-architecture in visual cortex.," Nature 433 (7026), 597-603 (2005). 10.1038/nature03274 (Pubitemid 40282986)
4. N. L. Rochefort, H. Jia, and A. Konnerth, " Calcium imaging in the living brain: prospects for molecular medicine.," Trends Mol. Med. 14 (9), 389-399 (2008). 10.1016/j.molmed.2008.07.005
5. W. Denk, J. H. Strickler, and W. W. Webb, " Two-photon laser scanning fluorescence microscopy.," Science 248 (4951), 73-76 (1990). 10.1126/science.2321027
6. X. Liu, H. Gong, X. Li, and W. Zhou, " Monitoring calcium concentration in neurons with cameleon.," J. Biosci. Bioeng. 105 (2), 106-109 (2008). 10.1263/jbb.105.106 (Pubitemid 351380990)
7. + imaging.," Nature Meth. 3 (5), 377-383 (2006). 10.1038/nmeth874
8. D. A. Dombeck, A. N. Khabbaz, F. Collman, T. L. Adelman, and D. W. Tank, " Imaging large-scale neural activity with cellular resolution in awake, mobile mice.," Neuron 56 (1), 43-57 (2007). (Pubitemid 47484173)
9. D. S. Greenberg, A. R. Houweling, and J. Kerr, " Population imaging of ongoing neuronal activity in the visual cortex of awake rats.," Nature Neurosci. 11 (7), 749-751 (2008). 10.1038/nn.2140 (Pubitemid 351896680)
10. R. Salome, Y. Kremer, S. Dieudonne, J. F. Leger, O. Krichevsky, C. Wyart, D. Chatenay, and L. Bourdieu, " Ultrafast random-access scanning in two-photon microscopy using acousto-optic deflectors.," J. Neurosci. Meth. 154 (1-2), 161-174 (2006). (Pubitemid 43816720)
11. X. Lv, C. Zhan, S. Zeng, W. R. Chen, and Q. Luo, " Construction of multiphoton laser scanning microscope based on dual-axis acousto-optic deflector.," Rev. Sci. Instrum. 77 (4), 046101 (2006). 10.1063/1.2190047
12. S. Zeng, X. Lv, K. Bi, C. Zhan, D. Li, W. R. Chen, W. Xiong, S. L. Jacques, and Q. Luo, " Analysis of the dispersion compensation of acousto-optic deflectors used for multiphoton imaging.," J. Biomed. Opt. 12, 24015 (2007). 10.1117/1.2714061 (Pubitemid 46937901)
13. B. F. Grewe, D. Langer, H. Kasper, B. M. Kampa and F. Helmchen, " High-speed in vivo calcium imaging reveals neuronal network activity with near-millisecond precision.," Nature Meth. 7 (5), 399-405 (2010). 10.1038/nmeth.1453
14. A. A. Grace and B. S. Bunney, " The control of firing pattern in nigral dopamine neurons: burst firing.," J. Neurosci. 4 (11), 2877-2890 (1984). (Pubitemid 15224432)
15. J. E. Lisman, " Bursts as a unit of neural information: making unreliable synapses reliable.," Trends Neurosci. 20 (1), 38-43 (1997). 10.1016/S0166-2236(96)10070-9 (Pubitemid 26421231)
16. K. D. Harris, H. Hirase, X. Leinekugel, D. A. Henze, and G. Buzsáki, " Temporal interaction between single spikes and complex spike bursts in hippocampal pyramidal cells.," Neuron 32 (1), 141-149 (2001). (Pubitemid 32995896)
17. V. Iyer, T. M. Hoogland, and P. Saggau, " Fast functional imaging of single neurons using random-access multiphoton (RAMP) microscopy.," J. Neurophysiol. 95 (1), 535-545 (2006). 10.1152/jn.00865.2005 (Pubitemid 44698953)
18. Y. Wu, X. Liu, W. Zhou, X. Lv, and S. Zeng, " Observing neuronal activities with random access two-photon microscope.," J. Innov. Opt. Health Sci. 12 (1), 67-71 (2009). 10.1142/S179354580900036X
19. W. G. Bel and F. Helmchen, " In vivo calcium imaging of neural network function.," Physiology (Bethesda) 22, 358-365 (2007).
20. B. F. Grewe and F. Helmchen, " Optical probing of neuronal ensemble activity.," Curr. Opin. Neurobiol. 19 (5), 520-529 (2009). 10.1016/j.conb.2009.09.003
21. E. Neher and G. J. Augustine, " Calcium gradients and buffers in bovine chromaffin cells.," J. Physiol. 450 (1), 273-301 (1992).
22. J. D. Clements and J. M. Bekkers, " Detection of spontaneous synaptic events with an optimally scaled template.," Biophys. J. 73 (1), 220-229 (1997). 10.1016/S0006-3495(97)78062-7 (Pubitemid 27274119)
23. J. Kerr, D. Greenberg, and F. Helmchen, " Imaging input and output of neocortical networks in vivo.," Proc. Natl. Acad. Sci. U.S.A. 102 (39), 14063-14068 (2005). 10.1073/pnas.0506029102 (Pubitemid 41377703)
24. D. Smetters, A. Majewska, and R. Yuste, " Detecting action potentials in neuronal populations with calcium imaging.," Methods 18 (2), 215-221 (1999). 10.1006/meth.1999.0774 (Pubitemid 29443837)
25. L. Moreaux and G. Laurent, " Estimating firing rates from calcium signals in locust projection neurons in vivo.," Front. Neural Circ. 1, 2 (2007).
26. E. A. Mukamel, A. Nimmerjahn, and M. J. Schnitzer, " Automated analysis of cellular signals from large-scale calcium imaging data.," Neuron 63 (6), 747-760 (2009). 10.1016/j.neuron.2009.08.009
27. T. Sato, N. Gray, Z. Mainen, and K. Svoboda, " The functional microarchitecture of the mouse barrel cortex.," Plos Biol. 5 (7), 1440-1452 (2007). (Pubitemid 47105338)
28. T. Sasaki, N. Takahashi, N. Matsuki, and Y. Ikegaya, " Fast and accurate detection of action potentials from somatic calcium fluctuations.," J. Neurophysiol. 100 (3), 1668-1676 (2008). 10.1152/jn.00084.2008
29. J. T. Vogelstein, B. O. Watson, A. M. Packer, R. Yuste, B. Jedynak, and L. Paninski, " Spike inference from calcium imaging using sequential monte carlo methods.," Biophys. J. 97 (2), 636-655 (2009). 10.1016/j.bpj.2008.08. 005
30. Y. Mishchencko, J. T. Vogelstein, and L. Paninski, " A Bayesian approach for inferring neuronal connectivity from calcium fluorescence imaging data.," Ann. Appl. Stat. (in press).
31. W. Watanabe, S. Matsunaga, K. Fukui, and K. Itoh, " Intracellular manipulation by femtosecond lasers: review.," J. Innov. Opt. Health Sci. 2 (1), 1-8 (2009). 10.1142/S1793545809000310 (Pubitemid 41778538)
32. M. Marhl, S. Schuster, and M. Brumen, " Mitochondria as an important factor in the maintenance of constant amplitudes of cytosolic calcium oscillations.," Biophys. Chem. 71 (2-3), 125-132 (1998). 10.1016/S0301-4622(97)00139-7 (Pubitemid 28266779)
33. 2+ sensor.," Nature Meth. 5 (9), 797-804 (2008).
34. P. Perreault and M. Avoli, " 4-Aminopyridine-induced epileptiform activity and a GABA-mediated long-lasting depolarization in the rat hippocampus.," J. Neurosci. 12 (1), 104-115 (1992).
35. P. Salazar, R. Tapia, and M. A. Rogawski, " Effects of neurosteroids on epileptiform activity induced by picrotoxin and 4-aminopyridine in the rat hippocampal slice.," Epilepsy Res. 55 (1-2), 71-82 (2003). 10.1016/S0920-1211(03)00112-8 (Pubitemid 37011374)
36. 2+ channels in rat sensory neurons.," J. Neurosci. 17 (19), 7404-7414 (1997). (Pubitemid 27413271)