SSR analysis of soybean (Glycine max (L.) Merr.) Genetic relationship and variety identification in Thailand

Australian Journal of Crop Science

Volumn 5, Issue 3, 2011, Pages 283-290

  Tantasawat, P ^a   Trongchuen, J ^a   Prajongjai, T ^a   Jenweerawat, S ^a   Chaowiset, W ^a  

^a SURANAREE UNIVERSITY OF TECHNOLOGY   (Thailand)

Author keywords

DNA fingerprinting; Genetic diversity; Microsatellite; Simple sequence repeat

Indexed keywords

GLYCINE MAX;

EID: 79955968427     PISSN: 18352693     EISSN: 18352707     Source Type: Journal    
DOI: None     Document Type: Article

References (56)

1. Abe J, Xu DH, Suzuki Y, Kanazawa A, Shimamoto Y (2003) Soybean germplasm pools in Asia revealed by nuclear SSRs. Theor Appl Genet 106: 445-453.
2. Bernard RL, Cremeens CR, Cooper RL, Collins FL, Krober OA, Athow KL, Laviolette FA, Coble CJ, Nelson RL (1998) Evaluation of the USDA soybean germplasm collection: Maturity groups 000 to IV (FC 01.547-PI 266.807). USDA Tech Bull 1844.
3. Burton JW, Carter Jr TE, Wilson RF (1999) Registration of 'Prolina' soybean. Crop Sci 39: 294-295.
4. Chotiyarnwong O, Chatwachirawong P, Chanprame S, Srinives P (2007) Evaluation of genetic diversity in Thai indigenous and recommended soybean varieties by SSR markers. Thai J Agri Sci 40: 119-126.
5. Chowdhury AK, Srinives P, Tongpamnak P, Saksoong P, Chatwachirawong P (2002) Genetic relationship among exotic soybean introductions in Thailand: Consequence for varietal registration. ScienceAsia 28: 227-239.
6. Cregan PB, Jarvik T, Bush AL, Shoemaker RC, Lark KG, Kahler AL, Kaya N, vanToai TT, Lohnes DG, Chung J, Specht JE (1999a) An integrated genetic linkage map of the soybean genome. Crop Sci 39: 1464-1490.
7. Cregan PB, Mudge J, Fickus EW, Danesh D, Denny R, Young ND (1999b) Two simple sequence repeat markers to select for soybean cyst nematode resistance conditioned by the rhg 1 locus. Theor Appl Genet 99: 811-818.
8. Diwan N, Cregan PB (1997) Automated sizing of fluorescent-labeled simple sequence repeat (SSR) markers to assay genetic variation in soybean. Theor Appl Genet 95: 723-733.
9. Dong YS, Zhao LM, Liu B, Wang ZW, Jin ZQ, Sun H (2004) The genetic diversity of cultivated soybean grown in China. Theor Appl Genet 108: 931-936.
10. Gizlice Z, Carter Jr TE, Burton JW (1994) Genetic base for North American public soybean cultivars released between 1947 and 1988. Crop Sci 34: 1143-1147.
11. Gizlice Z, Carter Jr TE, Burton JW (1996) Genetic diversity patterns in North American public soybean cultivars based on coefficient of parentage. Crop Sci 36: 753-756.
12. Griffin JD, Palmer RG (1995) Variability of thirteen isozyme loci in the USDA soybean germplasm collections. Crop Sci 35: 897-904.
13. Guan R, Chang R, Li Y, Wang L, Liu Z, Qiu L (2010) Genetic diversity comparison between Chinese and Japanese soybeans (Glycine max (L.) Merr.) revealed by nuclear SSRs. Genet Resour Crop Evol 57: 229-242.
14. Juvik GA, Bernard RL, Orf JH, Cavins JF, Thomas DI (1989) Evaluation of the USDA soybean germplasm collection: Maturity groups 000 to IV (PI 446.983 to PI 486.355). USDA Tech Bull 1760.
15. Karakaya HC, Tang Y, Cregan PB, Knap HT (2002) Molecular mapping of the fasciation mutation in soybean, Glycine max (Leguminosae). Amer J Bot 89: 559-565.
16. Keim P, Beavis W, Schupp J, Freestone R (1992) Evaluation of soybean RFLP marker diversity in adapted germplasm. Theor Appl Genet 85: 205-212.
17. Khan R, Khan H, Farhatullah, Harada K (2010) Evaluation of microsatellite markers to discriminate induced mutation lines, hybrid lines and cultigens in chickpea (Cicer arietinum L). Aust J Crop Sci 4: 301-308.
18. Kumar J, Verma V, Goyal A, Shahi AK, Sparoo R, Sangwan RS, Qazi GN (2009) Genetic diversity analysis in Cymbopogon species using DNA markers. Plant Omics J 2: 20-29.
19. Li Y-H, Li W, Zhang C, Yang L, Chang R-Z, Gaut BS, Qiu L-J (2010) Genetic diversity in domesticated soybean (Glycine max) and its wild progenitor (Glycine soja) for simple sequence repeat and single-nucleotide polymorphism loci. New Phytol 188: 242-253.
20. Li Z, Nelson RL (2001) Genetic diversity among soybean accessions from three countries measured by RAPDs. Crop Sci 41: 1337-1347.
21. Li Z, Qiu L, Thompson JA, Welsh MM, Nelson RL (2001) Molecular genetic analysis of U.S. and Chinese soybean ancestral lines. Crop Sci 41: 1330-1336.
22. Lorenzen LL, Boutin S, Young N, Specht JE, Shoemaker RC (1995) Soybean pedigree analysis using map-based markers: I. Tracking RFLP markers in cultivars. Crop Sci 35: 1326-1336.
23. Machikowa T, Laosuwan P (2009) Effects of extension of days to flowering on yield and other characters of early maturing soybean. Suranaree J Sci Technol 16: 169-174.
24. Mantel N (1967) The detection of disease clustering and a generalized regression approach. Cancer Res 27: 209-220.
25. Maughan PJ, Saghai Maroof MA, Buss GR (1995) Microsatellite and amplified sequence length polymorphism in cultivated and wild soybean. Genome 38: 715-723.
26. Maughan PJ, Saghai Maroof MA, Buss GR, Huestis GM (1996) Amplified fragment length polymorphism (AFLP) in soybean: Species diversity, inheritance, and nearisogenic line analysis. Theor Appl Genet 93: 392-401.
27. Morgante M, Hanafey M, Powell W (2002) Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes. Nat Genet 30: 194-200.
28. Narvel JM, Fehr WR, Chu WC, Grant D, Shoemaker RC (2000a) Simple sequence repeat diversity among soybean plant introductions and elite genotypes. Crop Sci 40: 1452-1458.
29. Narvel JM, Chu WC, Fehr WR, Cregan PB, Shoemaker RC (2000b) Development of multiplex sets of simple sequence repeat DNA markers covering the soybean genome. Mol Breeding 6: 175-183.
30. Nelson RL, Amdor PJ, Orf JH, Cavins JF (1988) Evaluation of the USDA soybean germplasm collection: Maturity groups 000 to IV (PI 427.136 to PI 445.845). USDA Tech Bull 1726.
31. Nelson RL, Amdor PJ, Orf JH, Lambert JW, Cavins JF, Kleiman R, Laviolette FA, Athow KA (1987) Evaluation of the USDA soybean germplasm collection: Maturity groups 000 to IV (PI 273.483 to PI 427.107). USDA Tech Bull 1718.
32. Office of Agricultural Economics (2008) Situation and trend of important agricultural products. Ministry of Agriculture and Cooperatives. http://www.doae.go.th/E-Book/trend25 51.pdf.
33. Perry MC, McIntosh MS (1991) Geographical patterns of variation in USDA soybean germplasm collection: I. Morphological traits. Crop Sci 31: 1350-1355.
34. Pookpakdi A (2003) Soybean: Golden Plant of Thailand. Kasesart University Press, Bangkok (in Thai).
35. Powell W, Machray GC, Provan J (1996) Polymorphism revealed by simple sequence repeats. Trends Plant Sci 1: 215-222.
36. Rohlf FJ (2000) NTSYS-pc: Numerical taxonomy and multivariate analysis system, version 2.2. Exeter Software, Setauket, New York, USA.
37. Rongwen J, Akkaya MS, Bhahwat AA, Lavi U, Cregan PB (1995) The use of microsatellite DNA markers for soybean genotype identification. Theor Appl Genet 90: 43-48.
38. Saghai Maroof K, Soliman M, Jorgensen RA, Allard RW (1984) Ribosomal DNA spacer-length polymorphisms in barley: Mendelian inheritance, chromosomal location, and population dynamics. Proc Natl Acad Sci USA 81: 8014-8018.
39. Sambrook J, Russell DW (2001) Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press, New York.
40. Seitova AM, Ignatov AN, Suprunova TP, Tsvetkov IL, Deineko EV, Dorokhov DB, Shumnyi VK, Skryabin KG (2004) Genetic variation of wild soybean Glycine soja Sieb. et Zucc. in the far east region of the Russian Federation. Russ J Genet 40: 165-171.
41. Shanmugasundaram S (1988) Leguminous vegetable cultivation and seed production. http://203.64.245.61/fulltext_pdf/eam 0149.pdf.
42. Singh RK, Mishra SK, Singh SP, Mishra N, Sharma ML (2010) Evaluation of microsatellite markers for genetic diversity analysis among sugarcane species and commercial hybrids. Aust J Crop Sci 4: 116-125.
43. Smith JR, Carpten JD, Brownstein MJ, Ghosh S, Magnuson VL, Gilbert DA, Trent JM, Collins FS (1995) Approach to genotyping errors caused by non-templated nucleotide addition by Taq DNA polymerase. Genome Res 5: 312-317.
44. Sneller CH (1994) Pedigree analysis of elite soybean lines. Crop Sci 34: 1515-1522.
45. Souframanien J, Gopalakrishna T (2004) A comparative analysis of genetic diversity in blackgram genotypes using RAPD and ISSR markers. Theor Appl Genet 109: 1687-1693.
46. Sutakom S (2004) Rajamangala 1: The soybean line with high potential for upper Northern region of Thailand. Paper presented at the 9th National Soybean Research Conference, Lampang, Thailand, 3-4 March 2004 (in Thai).
47. Tantasawat P, Trongchuen J, Prajongjai T, Seehalak W, Jittayasothorn Y (2010) Variety identification and comparative analysis of genetic diversity in yardlong bean (Vigna unguiculata spp. sesquipedalis) using morphological characters, SSR and ISSR analysis. Sci Hort 124: 204-216.
48. Tanya P, Srinives P, Toojinda T, Vanavichit A, Ha B-K, Bae J-S, Moon J-K, Lee S-H (2001) Evaluation of genetic diversity among soybean genotypes using SSR and SNP. Korean J Crop Sci 46: 334-340.
49. Tara Satyavathi C, Bhat KV, Bharadwaj C, Tiwari SP, Chaudhury VK (2006) AFLP analysis of genetic diversity in Indian soybean [Glycine max (L.) Merr.] varieties. Genet Res Crop Evol 53: 1069-1079.
50. Tar'an B, Zhang C, Warkentin T, Tullu A, Vandenberg A (2005) Genetic diversity among varieties and wild species accessions of pea (Pisum sativum L.) based on molecular markers, and morphological and physiological characters. Genome 48: 257-272.
51. Thompson JA, Nelson RL (1998) Utilization of diverse germplasm for soybean yield improvement. Crop Sci 38: 1362-1368.
52. Thompson JA, Nelson RL, Vodkin LO (1998) Identification of diverse soybean germplasm using RAPD markers. Crop Sci 38: 1348-1355.
53. Ude GN, Kenworthy WJ, Costa JM, Cregan PB, Alvernaz J (2003) Genetic diversity of soybean cultivars from China, Japan, North America, and North American ancestral lines determined by amplified fragment length polymorphism. Crop Sci 43: 1858-1867.
54. Wang L, Guan R, Zhangxiong L, Chang R, Qiu L (2006a) Genetic diversity of Chinese cultivated soybean revealed by SSR markers. Crop Sci 46: 1032-1038.
55. Wang L, Guan Y, Guan R, Li Y, Ma Y, Dong Z, Liu X, Zhang H, Zhang Y, Liu Z, Chang R, Xu H, Li L, Lin F, Luan W, Yan Z, Ning X, Zhu L, Cui Y, Piao R, Liu Y, Chen P, Qiu L (2006b) Establishment of Chinese soybean (Glycine max) core collections with agronomic traits and SSR markers. Euphytica 151: 215-223.
56. Wang M, Li R-Z, Yang W-M, Du W-J (2010) Assessing the genetic diversity of cultivars and wild soybeans using SSR markers. Afr J Biotechnol 9: 4857-4866.