Identification of diverse soybean germplasm using RAPD markers

Crop Science

Volumn 38, Issue 5, 1998, Pages 1348-1355

  Thompson, Jeffrey A ^a   Nelson, Randall L ^a   Vodkin, Lila O ^a  

^a UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

GENETIC DISTANCE; GENETIC DIVERSITY; GENETIC MARKER; GENOTYPE; GERMPLASM; PLANT GENETICS; RANDOM AMPLIFIED POLYMORPHIC DNA;

GLYCINE MAX;

EID: 0031664676     PISSN: 0011183X     EISSN: None     Source Type: Journal    
DOI: 10.2135/cropsci1998.0011183X003800050033x     Document Type: Article

References (35)

1. Abdelnoor, R.V., E.G. de Barros, and M.A. Moreira. 1995. Determination of genetic diversity within Brazilian soybean germplasm using random amplified polymorphic DNA techniques and comparative analysis with pedigree data. Braz. J. Genet. 18(2):265-273.
2. Bernard, R.L., G.A. Juvik, E.E. Hartwig, and C.J. Edwards, Jr. 1988. Origins and pedigrees of public soybean varieties in the United States and Canada. USDA Tech. Bull. 1746.
3. Bernard, R.L., G.A. Juvik, and R.L. Nelson. 1989. USDA Soybean Germplasm Collection Inventory. Vol. 2. Intl. Agric. Publ. INTSOY Ser. no. 31. Univ. of Illinois at Urbana-Champaign.
4. Doong, J.Y.H., and Y.T. Kiang. 1987. Cultivar identification by isozyme analysis. Soybean Genet. Newsl. 14:189-226.
5. Fehr, W.R., and R.C. Clark. 1973. Registration of five soybean germplasm populations. Crop Sci. 13:778.
6. Gizlice, Z., T.E. Carter, Jr., and J.W. Burton. 1993. Genetic diversity in North American soybean: I. Multivariate analysis of founding stock and relation to coefficient of parentage. Crop Sci. 33:614-620.
7. Gizlice, Z., T.E. Carter, Jr., and J.W. Burton. 1994. Genetic base for North American public soybean cultivars released between 1947 and 1988. Crop Sci. 34:1143-1151.
8. Gizlice, Z., T.E. Carter, Jr., and J.W. Burton. 1996. Genetic diversity patterns in North American public soybean cultivars based on coefficient of parentage. Crop Sci. 36:753-765.
9. Grabau, E.A., W.H. Davis, N.D. Phelps, and B.G. Gengenbach. 1992. Classification of soybean cultivars based on mitochondrial DNA restriction fragment length polymorphisms. Crop Sci. 32:271-274.
10. Heun, M., and T. Helentjaris. 1993. Inheritance of RAPDs in F1 hybrids of corn. Theor. Appl. Genet. 85:961-968.
11. Heun, M., J.P. Murphy, and T.D. Phillips. 1994. A comparison of RAPD and isozyme analyses for determining the genetic relationships among Avena sterilis L. accessions. Theor. Appl. Genet. 87:689-696.
12. Johnson, R.A., and D.W. Wichern. 1992. Applied multivariate statistical analysis. Prentice-Hall, Englewood Cliffs, NJ.
13. Juvik, G.A., R.L. Bernard, J.H. Orf, J.F. Cavins, and D.I. Thomas. 1989. Evaluation of the USDA Soybean Germplasm Collection: Maturity groups 000 to IV (PI 446.983 to PI 486.355). USDA Tech. Bull. 1760.
14. Keim, P., W. Beavis, J. Schupp, and R. Freestone. 1992. Evaluation of soybean RFLP marker diversity in adapted germplasm. Theor. Appl. Genet. 85:205-212.
15. Keim, P., R.C. Shoemaker, and R.G. Palmer. 1989. Restriction fragment length polymorphism diversity in soybean. Theor. Appl. Genet. 77:786-792.
16. Ko, H.L., D.C. Cowan, R.J. Henry, G.C. Graham, A.B. Blakeney, and L.G. Lewin. 1994. Random amplified polymorphic DNA analysis of Australian rice (Oryza sativa L.) varieties. Euphytica. 80:179-189.
17. Kresovich, S., W.F. Lamboy, R. Li, J. Ren, A.K. Szewc-McFadden, and S.M. Bliek. 1994. Application of molecular methods and statistical analysis for discrimination of accessions and clones of vetiver grass. Crop Sci. 34:805-809.
18. Lorenzen, L.L., S. Boutin, N. Young, J.E. Specht, and R.C. Shoemaker. 1995. Soybean pedigree analysis using map-based markers: I. Tracking RFLP markers in cultivars. Crop Sci. 35:1326-1336.
19. Mackill, D.J. 1995. Classifying japonica rice cultivars with RAPD markers. Crop Sci. 35:889-894.
20. Mumm, R.H., and J.W. Dudley. 1995. A PC SAS computer program to generate a dissimilarity matrix for cluster analysis. Crop Sci. 35:925-927.
21. Nelson, R.L., P.J. Amdor, J.H. Orf, J.W. Lambert, J.F. Cavins, R. Kleiman, F.A. Laviolette, and K.L. Athow. 1987. Evaluation of the USDA Soybean Germplasm Collection: Maturity Groups 000 to IV (PI 273.483 to PI 427.107). USDA Tech. Bull. 1718.
22. Nelson, R.L., P.J. Amdor, J.H. Orf, and J.F. Cavins. 1988. Evaluation of the USDA Soybean Germplasm Collection: Maturity groups 000 to IV (PI 427.136 to PI 445.845). USDA Tech. Bull. 1726.
23. Oard, J.D., and S. Dronavalli. 1992. Rapid isolation of rice and maize DNA for analysis by random-primer PCR. Plant Mol. Biol. Rep. 10(3):236-241.
24. SAS Institute. 1989a. SAS/STAT user's guide, version 6. 4th ed., Vol. 1. SAS Inst., Cary, NC.
25. SAS Institute. 1989b. SAS/STAT user's guide, version 6. 4th ed., Vol. 2. SAS Inst., Cary, NC.
26. SAS Institute. 1992. Technical report P-229. SAS Inst., Cary, NC.
27. Shepard, R.N. 1974. Representation of structure in similarity data: Problems and prospects. Psychometrika 39:373-421.
28. Skorupska, H.T., R.C. Shoemaker, A. Warner, E.R. Snipe, and W.C. Bridges. 1993. Restriction fragment length polymorphism in soybean germplasm of the southern USA. Crop Sci. 33:1169-1176.
29. Sneath, P.H.A., and R.R. Sokal. 1973. Numerical taxonomy. W.H. Freeman and Co., San Francisco.
30. Sneller, C.H. 1994. Pedigree analysis of elite soybean lines. Crop Sci. 34:1515-1522.
31. Sokal, R.R., and C.D. Michener. 1958. A statistical method for evaluating systematic relationships. Univ. Kans. Sci. Bull. 38:1409-1438.
32. Thompson, J.A. 1997. Identification and utilization of diverse germplasm for soybean yield improvement. Ph. D. Diss, Univ. of Illinois, Urbana.
33. Ward, J.H. 1963. Hierarchical grouping to optimize an objective function. J. Am. Static. Assoc. 56:236-244.
34. Welsh, J., and M. McClelland. 1990. Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Res. 18:7213-7218.
35. Williams, J.G.K., A.R. Kubelik. K.J. Livak, J.A. Rafalski, and S.V. Tingey, 1990. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res. 18:6531-6535.