Membrane proteins of Pseudoalteromonas tunicata during the transition from planktonic to extracellular matrix-adherent state

Environmental Microbiology Reports

Volumn 3, Issue 3, 2011, Pages 405-413

  Hoke, David E ^a   Zhang, Kunkun ^b   Egan, Suhelen ^c   Hatfaludi, Tamas ^a   Buckle, Ashley M ^a   Adler, Ben ^b  

^a Department of Biochemistry and Molecular Biology ^*  (Australia)

^b MONASH UNIVERSITY   (Australia)

^c UNIVERSITY OF NEW SOUTH WALES   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA (MICROORGANISMS); CIONA INTESTINALIS; PSEUDOALTEROMONAS; PSEUDOALTEROMONAS TUNICATA; UROCHORDATA;

EID: 79955961547     PISSN: None     EISSN: 17582229     Source Type: Journal    
DOI: 10.1111/j.1758-2229.2011.00246.x     Document Type: Article

References (43)

1. Bernarde, C., Lehours, P., Lasserre, J.P., Castroviejo, M., Bonneu, M., Megraud, F., and Menard, A. (2010) A complexomic study of two Helicobacter pylori strains of two pathological origins: potential targets for vaccine development and new insight in bacteria metabolism. Mol Cell Proteomics 9: 2796-2826.
2. Blanvillain, S., Meyer, D., Boulanger, A., Lautier, M., Guynet, C., Denance, N., etal. (2007) Plant carbohydrate scavenging through tonB-dependent receptors: a feature shared by phytopathogenic and aquatic bacteria. PLoS ONE 2: e224.
3. Burke, C., Thomas, T., Egan, S., and Kjelleberg, S. (2007) The use of functional genomics for the identification of a gene cluster encoding for the biosynthesis of an antifungal tambjamine in the marine bacterium Pseudoalteromonas tunicata. Environ Microbiol 9: 814-818.
4. Cullen, P.A., Cordwell, S.J., Bulach, D.M., Haake, D.A., and Adler, B. (2002) Global analysis of outer membrane proteins from Leptospira interrogans serovar Lai. Infect Immun 70: 2311-2318.
5. Cullen, P.A., Xu, X., Matsunaga, J., Sanchez, Y., Ko, A.I., Haake, D.A., and Adler, B. (2005) Surfaceome of Leptospira spp. Infect Immun 73: 4853-4863.
6. Dalisay, D.S., Webb, J.S., Scheffel, A., Svenson, C., James, S., Holmstrom, C., etal. (2006) A mannose-sensitive haemagglutinin (MSHA)-like pilus promotes attachment of Pseudoalteromonas tunicata cells to the surface of the green alga Ulva australis. Microbiology 152: 2875-2883.
7. Dandekar, T., Snel, B., Huynen, M., and Bork, P. (1998) Conservation of gene order: a fingerprint of proteins that physically interact. Trends Biochem Sci 23: 324-328.
8. Egan, S., Thomas, T., Holmstrom, C., and Kjelleberg, S. (2000) Phylogenetic relationship and antifouling activity of bacterial epiphytes from the marine alga Ulva lactuca. Environ Microbiol 2: 343-347.
9. Egan, S., James, S., Holmstrom, C., and Kjelleberg, S. (2002) Correlation between pigmentation and antifouling compounds produced by Pseudoalteromonas tunicata. Environ Microbiol 4: 433-442.
10. Fowler, S.J., Jose, S., Zhang, X., Deutzmann, R., Sarras, M.P., Jr, and Boot-Handford, R.P. (2000) Characterization of hydra type IV collagen. Type IV collagen is essential for head regeneration and its expression is up-regulated upon exposure to glucose. J Biol Chem 275: 39589-39599.
11. Franks, A., Egan, S., Holmstrom, C., James, S., Lappin-Scott, H., and Kjelleberg, S. (2006) Inhibition of fungal colonization by Pseudoalteromonas tunicata provides a competitive advantage during surface colonization. Appl Environ Microbiol 72: 6079-6087.
12. Gardy, J.L., Laird, M.R., Chen, F., Rey, S., Walsh, C.J., Ester, M., and Brinkman, F.S. (2005) PSORTb v.2.0: expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome analysis. Bioinformatics 21: 617-623.
13. Hauk, P., Guzzo, C.R., Roman Ramos, H., Ho, P.L., and Farah, C.S. (2009) Structure and calcium-binding activity of LipL32, the major surface antigen of pathogenic Leptospira sp. J Mol Biol 390: 722-736.
14. Hoke, D.E., Egan, S., Cullen, P.A., and Adler, B. (2008) LipL32 is an extracellular matrix-interacting protein of Leptospira spp. and Pseudoalteromonas tunicata. Infect Immun 76: 2063-2069.
15. Holmstrom, C., James, S., Neilan, B.A., White, D.C., and Kjelleberg, S. (1998) Pseudoalteromonas tunicata sp. nov., a bacterium that produces antifouling agents. Int J Syst Bacteriol 48 (Part 4): 1205-1212.
16. Huxley-Jones, J., Robertson, D.L., and Boot-Handford, R.P. (2007) On the origins of the extracellular matrix in vertebrates. Matrix Biol 26: 2-11.
17. James, S.G., Holmstrom, C., and Kjelleberg, S. (1996) Purification and characterization of a novel antibacterial protein from the marine bacterium D2. Appl Environ Microbiol 62: 2783-2788.
18. Jensen, L.J., Kuhn, M., Stark, M., Chaffron, S., Creevey, C., Muller, J., etal. (2009) STRING 8 - a global view on proteins and their functional interactions in 630 organisms. Nucleic Acids Res 37: D412-D416.
19. Kleinman, H.K., and Martin, G.R. (2005) Matrigel: basement membrane matrix with biological activity. Semin Cancer Biol 15: 378-386.
20. Koebnik, R. (2005) TonB-dependent trans-envelope signalling: the exception or the rule? Trends Microbiol 13: 343-347.
21. Koronakis, V., Sharff, A., Koronakis, E., Luisi, B., and Hughes, C. (2000) Crystal structure of the bacterial membrane protein TolC central to multidrug efflux and protein export. Nature 405: 914-919.
22. Koronakis, V., Eswaran, J., and Hughes, C. (2004) Structure and function of TolC: the bacterial exit duct for proteins and drugs. Annu Rev Biochem 73: 467-489.
23. Lasserre, J.P., Beyne, E., Pyndiah, S., Lapaillerie, D., Claverol, S., and Bonneu, M. (2006) A complexomic study of Escherichia coli using two-dimensional blue native/SDS polyacrylamide gel electrophoresis. Electrophoresis 27: 3306-3321.
24. Mai-Prochnow, A., Evans, F., Dalisay-Saludes, D., Stelzer, S., Egan, S., James, S., etal. (2004) Biofilm development and cell death in the marine bacterium Pseudoalteromonas tunicata. Appl Environ Microbiol 70: 3232-3238.
25. Marti-Arbona, R., Xu, C., Steele, S., Weeks, A., Kuty, G.F., Seibert, C.M., and Raushel, F.M. (2006) Annotating enzymes of unknown function: N-formimino-L-glutamate deiminase is a member of the amidohydrolase superfamily. Biochemistry 45: 1997-2005.
26. Marzoa, J., Sanchez, S., Ferreiros, C.M., and Criado, M.T. (2010) Identification of Neisseria meningitidis outer membrane vesicle complexes using 2-D high resolution clear native/SDS-PAGE. J Proteome Res 9: 611-619.
27. Monahan, A.M., Miller, I.S., and Nally, J.E. (2009) Leptospirosis: risks during recreational activities. J Appl Microbiol 107: 707-716.
28. Patti, J.M., Allen, B.L., McGavin, M.J., and Hook, M. (1994) MSCRAMM-mediated adherence of microorganisms to host tissues. Annu Rev Microbiol 48: 585-617.
29. Pawelek, P.D., Croteau, N., Ng-Thow-Hing, C., Khursigara, C.M., Moiseeva, N., Allaire, M., and Coulton, J.W. (2006) Structure of TonB in complex with FhuA, E. coli outer membrane receptor. Science 312: 1399-1402.
30. Perkins, D.N., Pappin, D.J., Creasy, D.M., and Cottrell, J.S. (1999) Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 20: 3551-3567.
31. Rabilloud, T. (2009) Membrane proteins and proteomics: love is possible, but so difficult. Electrophoresis 30 (Suppl. 1): S174-S180.
32. Rao, D., Webb, J.S., and Kjelleberg, S. (2006) Microbial colonization and competition on the marine alga Ulva australis. Appl Environ Microbiol 72: 5547-5555.
33. Sarras, M.P., Jr, and Deutzmann, R. (2001) Hydra and Niccolo Paganini (1782-1840) - two peas in a pod? The molecular basis of extracellular matrix structure in the invertebrate, Hydra. Bioessays 23: 716-724.
34. Schagger, H., and von Jagow, G. (1991) Blue native electrophoresis for isolation of membrane protein complexes in enzymatically active form. Anal Biochem 199: 223-231.
35. Shultis, D.D., Purdy, M.D., Banchs, C.N., and Wiener, M.C. (2006) Outer membrane active transport: structure of the BtuB:TonB complex. Science 312: 1396-1399.
36. Skovhus, T.L., Holmstrom, C., Kjelleberg, S., and Dahllof, I. (2007) Molecular investigation of the distribution, abundance and diversity of the genus Pseudoalteromonas in marine samples. FEMS Microbiol Ecol 61: 348-361.
37. Stenberg, F., Chovanec, P., Maslen, S.L., Robinson, C.V., Ilag, L.L., von Heijne, G., and Daley, D.O. (2005) Protein complexes of the Escherichia coli cell envelope. J Biol Chem 280: 34409-34419.
38. Swamy, M., Siegers, G.M., Minguet, S., Wollscheid, B., and Schamel, W.W. (2006) Blue native polyacrylamide gel electrophoresis (BN-PAGE) for the identification and analysis of multiprotein complexes. Sci STKE 2006: pl4.
39. Thomas, T., Evans, F.F., Schleheck, D., Mai-Prochnow, A., Burke, C., Penesyan, A., etal. (2008) Analysis of the Pseudoalteromonas tunicata genome reveals properties of a surface-associated life style in the marine environment. PLoS ONE 3: e3252.
40. Tulla, M., Huhtala, M., Jaalinoja, J., Kapyla, J., Farndale, R.W., Ala-Kokko, L., etal. (2007) Analysis of an ascidian integrin provides new insight into early evolution of collagen recognition. FEBS Lett 581: 2434-2440.
41. Vivian, J.P., Beddoe, T., McAlister, A.D., Wilce, M.C., Zaker-Tabrizi, L., Troy, S., etal. (2009) Crystal structure of LipL32, the most abundant surface protein of pathogenic Leptospira spp. J Mol Biol 387: 1229-1238.
42. Vizzini, A., Pergolizzi, M., Vazzana, M., Salerno, G., Di Sano, C., Macaluso, P., etal. (2008) FACIT collagen (1alpha-chain) is expressed by hemocytes and epidermis during the inflammatory response of the ascidian Ciona intestinalis. Dev Comp Immunol 32: 682-692.
43. Zhang, X., Fei, K., Agbas, A., Yan, L., Zhang, J., O'Reilly, B., Jr, etal. (2002) Structure and function of an early divergent form of laminin in hydra: a structurally conserved ECM component that is essential for epithelial morphogenesis. Dev Genes Evol 212: 159-172.