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Volumn 6, Issue 5, 2011, Pages

Targeted assembly of short sequence reads

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

EID: 79955919332     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0019816     Document Type: Article
Times cited : (39)

References (18)
  • 1
    • 77954526823 scopus 로고    scopus 로고
    • The case for cloud computing in genome informatics
    • Stein LD, (2010) The case for cloud computing in genome informatics. Genome Biol 11: 207.
    • (2010) Genome Biol , vol.11 , pp. 207
    • Stein, L.D.1
  • 3
    • 60149109931 scopus 로고    scopus 로고
    • Profiling model T-cell metagenomes with short reads
    • Warren RL, Nelson BH, Holt RA, (2009) Profiling model T-cell metagenomes with short reads. Bioinformatics 25: 458-464.
    • (2009) Bioinformatics , vol.25 , pp. 458-464
    • Warren, R.L.1    Nelson, B.H.2    Holt, R.A.3
  • 4
    • 70349648171 scopus 로고    scopus 로고
    • Profiling the T-cell receptor beta-chain repertoire by massively parallel sequencing
    • Freeman JD, Warren RL, Webb JR, Nelson BH, Holt RA, (2009) Profiling the T-cell receptor beta-chain repertoire by massively parallel sequencing. Genome Res 19: 1817-1824.
    • (2009) Genome Res , vol.19 , pp. 1817-1824
    • Freeman, J.D.1    Warren, R.L.2    Webb, J.R.3    Nelson, B.H.4    Holt, R.A.5
  • 6
    • 68549104404 scopus 로고    scopus 로고
    • 1000 Genome Project Data Processing Subgroup: The Sequence Alignment/Map format and SAMtools
    • Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, et al. (2009) 1000 Genome Project Data Processing Subgroup: The Sequence Alignment/Map format and SAMtools. Bioinformatics 25: 2078-2079.
    • (2009) Bioinformatics , vol.25 , pp. 2078-2079
    • Li, H.1    Handsaker, B.2    Wysoker, A.3    Fennell, T.4    Ruan, J.5
  • 7
    • 70349969478 scopus 로고    scopus 로고
    • Mutational evolution in a lobular breast tumour profiled at single nucleotide resolution
    • Shah SP, Morin RD, Khattra J, Prentice L, Pugh T, et al. (2009) Mutational evolution in a lobular breast tumour profiled at single nucleotide resolution. Nature 461: 809-813.
    • (2009) Nature , vol.461 , pp. 809-813
    • Shah, S.P.1    Morin, R.D.2    Khattra, J.3    Prentice, L.4    Pugh, T.5
  • 8
    • 55549097836 scopus 로고    scopus 로고
    • Mapping short DNA sequencing reads and calling variants using mapping quality scores
    • Li H, Ruan J, Durbin R, (2008) Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res 18: 1851-1858.
    • (2008) Genome Res , vol.18 , pp. 1851-1858
    • Li, H.1    Ruan, J.2    Durbin, R.3
  • 9
    • 77951957381 scopus 로고    scopus 로고
    • SNVMix: predicting single nucleotide variants from next-generation sequencing of tumors
    • Goya R, Sun MG, Morin RD, Leung G, Ha G, et al. (2010) SNVMix: predicting single nucleotide variants from next-generation sequencing of tumors. Bioinformatics 26: 730-736.
    • (2010) Bioinformatics , vol.26 , pp. 730-736
    • Goya, R.1    Sun, M.G.2    Morin, R.D.3    Leung, G.4    Ha, G.5
  • 10
    • 47949084846 scopus 로고    scopus 로고
    • Profiling the HeLa S3 transcriptome using randomly primed cDNA and massively parallel short-read sequencing
    • Morin R, Bainbridge M, Fejes A, Hirst M, Krzywinski M, et al. (2008) Profiling the HeLa S3 transcriptome using randomly primed cDNA and massively parallel short-read sequencing. Biotechniques 45: 81-94.
    • (2008) Biotechniques , vol.45 , pp. 81-94
    • Morin, R.1    Bainbridge, M.2    Fejes, A.3    Hirst, M.4    Krzywinski, M.5
  • 11
    • 78751650428 scopus 로고    scopus 로고
    • Deep RNA sequencing analysis of readthrough gene fusions in human prostate adenocarcinoma and reference samples
    • Nacu S, Yuan W, Kan Z, Bhatt D, Rivers CS, et al. (2011) Deep RNA sequencing analysis of readthrough gene fusions in human prostate adenocarcinoma and reference samples. BMC Med Genomics 4: 11.
    • (2011) BMC Med Genomics , vol.4 , pp. 11
    • Nacu, S.1    Yuan, W.2    Kan, Z.3    Bhatt, D.4    Rivers, C.S.5
  • 12
    • 37049015104 scopus 로고    scopus 로고
    • Expression of the TMPRSS2:ERG fusion gene predicts cancer recurrence after surgery for localised prostate cancer
    • Nam RK, Sugar L, Yang W, Srivastava S, Klotz LH, et al. (2007) Expression of the TMPRSS2:ERG fusion gene predicts cancer recurrence after surgery for localised prostate cancer. Br J Cancer 97: 1690-1695.
    • (2007) Br J Cancer , vol.97 , pp. 1690-1695
    • Nam, R.K.1    Sugar, L.2    Yang, W.3    Srivastava, S.4    Klotz, L.H.5
  • 14
    • 84975742565 scopus 로고    scopus 로고
    • A map of human genome variation from population-scale sequencing
    • 1000 Genomes Project Consortium
    • Durbin RM, Abecasis GR, Altshuler DL, Auton A, et al. 1000 Genomes Project Consortium (2010) A map of human genome variation from population-scale sequencing. Nature 467: 1061-1073.
    • (2010) Nature , vol.467 , pp. 1061-1073
    • Durbin, R.M.1    Abecasis, G.R.2    Altshuler, D.L.3    Auton, A.4
  • 16
    • 75649124547 scopus 로고    scopus 로고
    • De novo assembly of human genomes with massively parallel short read sequencing
    • Li R, Zhu H, Ruan J, Qian W, Fang X, et al. (2010) De novo assembly of human genomes with massively parallel short read sequencing. Genome Res 20: 265-272.
    • (2010) Genome Res , vol.20 , pp. 265-272
    • Li, R.1    Zhu, H.2    Ruan, J.3    Qian, W.4    Fang, X.5
  • 17
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li H, Durbin R, (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25: 1754-1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 18
    • 74049090046 scopus 로고    scopus 로고
    • Building the sequence map of the human pan-genome
    • Li R, Li Y, Zheng H, Luo R, Zhu H, et al. (2010) Building the sequence map of the human pan-genome. Nat Biotechnol 28: 57-63.
    • (2010) Nat Biotechnol , vol.28 , pp. 57-63
    • Li, R.1    Li, Y.2    Zheng, H.3    Luo, R.4    Zhu, H.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.