Genome-wide analysis of cytochrome P450 monooxygenase genes in the silkworm, Bombyx mori

Gene

Volumn 480, Issue 1-2, 2011, Pages 42-50

  Ai, Junwen ^a,b   Zhu, Yong ^b   Duan, Jun ^b,c   Yu, Quanyou ^b,c   Zhang, Gaojun ^b   Wan, Fei ^a   Xiang, Zhong huai ^b  

^a The Sericultural Research Institute of Hunan   (China)

^b SOUTHWEST UNIVERSITY   (China)

^c CHONGQING UNIVERSITY   (China)

Author keywords

Cytochrome P450; Gene clusters; Gene structure; Silkworm (Bombyx mori)

Indexed keywords

UNSPECIFIC MONOOXYGENASE;

ARTICLE; CHROMOSOME; CYP12 GENE; CYP333 GENE; DROSOPHILA MELANOGASTER; EXON; GENE; GENE DUPLICATION; GENE SEQUENCE; GENETIC CONSERVATION; GENOME ANALYSIS; INTRON; MOLECULAR EVOLUTION; MULTIGENE FAMILY; NONHUMAN; PHYLOGENETIC TREE; PRIORITY JOURNAL; PSEUDOGENE; SILKWORM; XENOBIOTIC METABOLISM;

ANIMALS; BOMBYX; CHROMOSOME MAPPING; CONSERVED SEQUENCE; CYTOCHROME P-450 ENZYME SYSTEM; DROSOPHILA MELANOGASTER; EVOLUTION, MOLECULAR; GENOME, INSECT; INTRONS; PHYLOGENY; PSEUDOGENES;

BOMBYX MORI; DROSOPHILA MELANOGASTER; HEXAPODA;

EID: 79955911730     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2011.03.002     Document Type: Article

References (76)

1. Ai J., Wang G., Li Y., Yu Q., Zhang X., Zhu Y., et al. Molecular cloning, sequence analysis and transcriptional activity determination of cytochrome P450 gene CYP18A1 in the silkworm, Bombyx mori. Acta Entomol. Sin. 2008, 51:237-245.
2. Ai J., Yu Q., Cheng T., Dai F., Zhang X., Zhu Y., et al. Characterization of multiple CYP9A genes in the silkworm, Bombyx mori. Mol. Biol. Rep. 2010, 37:1657-1664.
3. Bassett M.H., McCarthy J.L., Waterman M.R., Sliter T.J. Sequence and developmental expression of Cyp18, a member of a new cytochrome P450 family from Drosophila. Mol. Cell. Endocrinol. 1997, 131:39-49.
4. Berenbaum M.R. Postgenomic chemical ecology: from genetic code to ecological interactions. J. Chem. Ecol. 2002, 28:873-896.
5. Cheng T.C., Xia Q.Y., Qian J.F., Liu C., Lin Y., Zha X.F., et al. Mining single nucleotide polymorphisms from EST data of silkworm, Bombyx mori, inbred strain Dazao. Insect Biochem. Mol. Biol. 2004, 34:523-530.
6. Claudianos C., Ranson H., Johnson R.M., Biswas S., Schuler M.A., Berenbaum M.R., et al. A deficit of detoxification enzymes: pesticide sensitivity and environmental response in the honeybee. Insect Mol. Biol. 2006, 15:615-636.
7. Daborn P., Boundy S., Yen J., Pittendrigh B., ffrench-Constant R. DDT resistance in Drosophila correlates with Cyp6g1 over-expression and confers cross-resistance to the neonicotinoid imidacloprid. Mol. Genet. Genomics 2001, 266:556-563.
8. Daborn P.J., Yen J.L., Bogwitz M.R., Le Goff G., Feil E., Jeffers S., et al. A single p450 allele associated with insecticide resistance in Drosophila. Science (New York NY) 2002, 297:2253-2256.
9. Davies L., Williams D.R., Turner P.C., Rees H.H. Characterization in relation to development of an ecdysteroid agonist-responsive cytochrome P450, CYP18A1, in Lepidoptera. Arch. Biochem. Biophys. 2006, 453:4-12.
10. de Souza S.J., Long M., Klein R.J., Roy S., Lin S., Gilbert W. Toward a resolution of the introns early/late debate: only phase zero introns are correlated with the structure of ancient proteins. Proc. Natl Acad. Sci. U. S. A. 1998, 95:5094-5099.
11. Feyereisen R. Insect P450 enzymes. Annu. Rev. Entomol. 1999, 44:507-533.
12. Feyereisen R. Insect cytochrome P450. Comprehensive Molecular Insect Science 2005, vol. 4:1-77. Elsevier, Oxford. L.I. Gilbert, K. Iatrou, S.S. Gill (Eds.).
13. Feyereisen R. Evolution of insect P450. Biochem. Soc. Trans. 2006, 34:1252-1255.
14. Feyereisen R. Arthropod CYPomes illustrate the tempo and mode in P450 evolution. Biochim. Biophys. Acta 2011, 1814:19-28.
15. Force A., Lynch M., Pickett F.B., Amores A., Yan Y.L., Postlethwait J. Preservation of duplicate genes by complementary, degenerative mutations. Genetics 1999, 151:1531-1545.
16. Gotoh O. Evolution and differentiation of P-450 genes. Cytochrome P-450 1993, 255-272. VCH, New York. T. Omura, Y. Ishimura, Y. Fujii-Kuriyama (Eds.).
17. Gotoh O. Divergent structures of Caenorhabditis elegans cytochrome P450 genes suggest the frequent loss and gain of introns during the evolution of nematodes. Mol. Biol. Evol. 1998, 15:1447-1459.
18. Grubor V.D., Heckel D.G. Evaluation of the role of CYP6B cytochrome P450s in pyrethroid resistant Australian Helicoverpa armigera. Insect Mol. Biol. 2007, 16:15-23.
19. Gu S.H., Chow Y.S. Analysis of ecdysteroidogenic activity of the prothoracic glands during the last larval instar of the silkworm, Bombyx mori. Arch. Insect Biochem. Physiol. 2005, 58:17-26.
20. Guittard E., Blais C., Maria A., Jean-Philippe Parvy J.P., Pasricha P., Lumb C., Lafont R., Daborn P.J., Dauphin-Villemant C. CYP18A1, a key enzyme of Drosophila steroid hormone inactivation, is essential for metamorphosis. Dev. Biol. 2011, 349:35-45.
21. Guzov V.M., Unnithan G.C., Chernogolov A.A., Feyereisen R. CYP12A1, a mitochondrial cytochrome P450 from the house fly. Arch. Biochem. Biophys. 1998, 359:231-240.
22. He M., Li J., Zhang S. Statistical characteristics of eukaryotic intron database. Front Biol. China 2006, 4:362-366.
23. Helvig C., Koener J.F., Unnithan G.C., Feyereisen R. CYP15A1, the cytochrome P450 that catalyzes epoxidation of methyl farnesoate to juvenile hormone III in cockroach corpora allata. Proc. Natl Acad. Sci. U. S. A. 2004, 101:4024-4029.
24. Hung C.F., Harrison T.L., Berenbaum M.R., Schuler M.A. CYP6B3: a second furanocoumarin-inducible cytochrome P450 expressed in Papilio polyxenes. Insect Mol. Biol. 1995, 4:149-160.
25. Hurban P., Thummel C. Isolation and characterization of fifteen ecdysone-inducible Drosophila genes reveal unexpected complexities in ecdysone regulation. Mol. Cell. Biol. 1993, 13:7101-7111.
26. Li X., Berenbaum M.R., Schuler M.A. Molecular cloning and expression of CYP6B8: a xanthotoxin-inducible cytochrome P450 cDNA from Helicoverpa zea. Insect Biochem. Mol. Biol. 2000, 30:75-84.
27. Li X., Schuler M.A., Berenbaum M.R. Jasmonate and salicylate induce expression of herbivore cytochrome P450 genes. Nature 2002, 419:712-715.
28. Li B., Xia Q., Lu C., Zhou Z., Xiang Z. Analysis of cytochrome P450 genes in silkworm genome (Bombyx mori). Sci. China 2005, 48:414-418.
29. Ma R., Cohen M.B., Berenbaum M.R., Schuler M.A. Black swallowtail (Papilio polyxenes) alleles encode cytochrome P450s that selectively metabolize linear furanocoumarins. Arch. Biochem. Biophys. 1994, 310:332-340.
30. Maibeche-Coisne M., Jacquin-Joly E., Francois M.C., Nagnan-Le Meillour P. cDNA cloning of biotransformation enzymes belonging to the cytochrome P450 family in the antennae of the noctuid moth Mamestra brassicae. Insect Mol. Biol. 2002, 11:273-281.
31. Maibeche-Coisne M., Merlin C., Francois M.C., Porcheron P., Jacquin-Joly E. P450 and P450 reductase cDNAs from the moth Mamestra brassicae: cloning and expression patterns in male antennae. Gene 2005, 346:195-203.
32. Mita K., Morimyo M., Okano K., Koike Y., Nohata J., Kawasaki H., et al. The construction of an EST database for Bombyx mori and its application. Proc. Natl Acad. Sci. U. S. A. 2003, 100:14121-14126.
33. Mita K., Kasahara M., Sasaki S., Nagayasu Y., Yamada T., Kanamori H., et al. The genome sequence of silkworm, Bombyx mori. DNA Res. 2004, 11:27-35.
34. Namiki T., Niwa R., Sakudoh T., Shirai K., Takeuchi H., Kataoka H. Cytochrome P450 CYP307A1/Spook: a regulator for ecdysone synthesis in insects. Biochem. Biophys. Res. Commun. 2005, 337:367-374.
35. Nebert D.W., Gonzalez F.J. P450 genes: structure, evolution and regulation. Annu. Rev. Biochem. 1987, 56:945-993.
36. Nelson D.R. Cytochrome P450 and the individuality of species. Arch. Biochem. Biophys. 1999, 369:1-10.
37. Nelson D., Strobel H. Evolution of cytochrome P-450 proteins. Mol. Biol. Evol. 1987, 4:572-593.
38. Nelson D.R., Zeldin D.C., Hoffman S.M., Maltais L.J., Wain H.M., Nebert D.W. Comparison of cytochrome P450 (CYP) genes from the mouse and human genomes, including nomenclature recommendations for genes, pseudogenes and alternative-splice variants. Pharmacogenetics 2004, 14:1-18.
39. Nicole Je, Ingolf S., Burkhard S. Metabolism of methoxychlor by the p450-monooxygenase cyp6g1 involved in insecticide resistance of Drosophila melanogaster after expression in cell cultures of Nicotiana tabacum. Chem. Biodivers. 2010, 7:722-734.
40. Niwa R., Matsuda T., Yoshiyama T., Namiki T., Mita K., Fujimoto Y., et al. CYP306A1, a cytochrome P450 enzyme, is essential for ecdysteroid biosynthesis in the prothoracic glands of Bombyx and Drosophila. J. Biol. Chem. 2004, 279:35942-35949.
41. Niwa R., Sakudoh T., Namiki T., Saida K., Fujimoto Y., Kataoka H. The ecdysteroidogenic P450 Cyp302a1/disembodied from the silkworm, Bombyx mori, is transcriptionally regulated by prothoracicotropic hormone. Insect Mol. Biol. 2005, 14:563-571.
42. Omura T. Localization of cytochrome P450 in membranes: mitochondria. Cytochrome P450 1993, 61-69. Springer, Berlin. J.B. Schenkman, H. Greim (Eds.).
43. Ono H., Rewitz K.F., Shinoda T., Itoyama K., Petryk A., Rybczynski R., et al. Spook and Spookier code for stage-specific components of the ecdysone biosynthetic pathway in Diptera. Dev. Biol. 2006, 298:555-570.
44. Petryk A., Warren J.T., Marques G., Jarcho M.P., Gilbert L.I., Kahler J., et al. Shade is the Drosophila P450 enzyme that mediates the hydroxylation of ecdysone to the steroid insect molting hormone 20-hydroxyecdysone. Proc. Natl Acad. Sci. U. S. A. 2003, 100:13773-13778.
45. Pittendrigh B., Aronstein K., Zinkovsky E., Andreev O., Campbell B., Daly J., et al. Cytochrome P450 genes from Helicoverpa armigera: expression in a pyrethroid-susceptible and -resistant strain. Insect Biochem. Mol. Biol. 1997, 27:507-512.
46. Pridgeon J.W., Zhang L., Liu N.N. Overexpression of CYP4G19 associated with a pyrethroid-resistant strain of the German cockroach, Blattella germanica (L.). Gene 2003, 314:157-163.
47. Rewitz K.F., Rybczynski R., Warren J.T., Gilbert L.I. The Halloween genes code for cytochrome P450 enzymes mediating synthesis of the insect moulting hormone. Biochem. Soc. Trans. 2006, 34:1256-1260.
48. Rewitz K.F., O'Connor M.B., Gilbert L.I. Molecular evolution of the insect Halloween family of cytochrome P450s: phylogeny, gene organization and functional conservation. Insect Biochem. Mol. Biol. 2007, 37:741-753.
49. Robertson H.M., Martos R., Sears C., Todres E., Walden K., Nardi J.B. Diversity of odourant binding proteins revealed by an expressed sequence tag project on male Manduca sexta moth antennae. Insect Mol. Biol. 1999, 8(4):501-518.
50. Robinson G.E., Evans J.D., Maleszka R., Robertson H.M., Weaver D.B., Worley K., et al. Sweetness and light: illuminating the honey bee genome. Insect Mol. Biol. 2006, 15:535-539.
51. Rogozin I.B., Wolf Y.I., Sorokin A.V., Mirkin B.G., Koonin E.V. Remarkable interkingdom conservation of intron positions and massive, lineage-specific intron loss and gain in eukaryotic evolution. Curr. Biol. 2003, 13:1512-1517.
52. Rose R.L., Goh D., Thompson D.M., et al. Cytochrome P450 (CYP) 9A1 in Heliothis virescens: the first member of a new CYP family. Insect Biochem. Mol. Biol. 1997, 27(6):605-615.
53. Scott J.G. Cytochromes P450 and insecticide resistance. Insect Biochem. Mol. Biol. 1999, 29:757-777.
54. Tamura K., Dudley J., Nei M., Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 2007, 24:1596-1599.
55. The International Silkworm Genome Consortium The genome of a lepidopteran model insect, the silkworm, Bombyx mori. Insect Biochem. Mol. Biol. 2008, 38:1036-1045.
56. Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., Higgins D.G. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 1997, 25:4876-4882.
57. Tijet N., Helvig C., Feyereisen R. The cytochrome P450 gene superfamily in Drosophila melanogaster: annotation, intron-exon organization and phylogeny. Gene 2001, 262:189-198.
58. Tribolium Genome Sequencing Consortium The genome of the model beetle and pest Tribolium castaneum. Nature 2008, 452:949-955.
59. Tsubota T., Shiotsuki T. Genomic analysis of carboxyl/cholinesterase genes in the silkworm Bombyx mori. BMC Genomics 2010, 11:377.
60. Vogt R.G. Comprehensive Physiology, Biochemistry, Pharmacology and Molecular Biology. Endocrinology 2005, 3:753-804. Elsevier Academic Press, London. L.I. Gilbea, K. Iatro, S. Gill (Eds.).
61. Vogt R.G., Rogers M.E., M-d Franco, Sun M. A comparative study of odorant binding protein genes: differential expression of the PBP1-GOBP2 gene cluster in Manduca sexta (Lepidoptera) and the organization of OBP genes in Drosophila melanogaster (Diptera). J. Exp. Biol. 2002, 205:719-744.
62. Wang Q., Hasan G., Pikielny C.W. Preferential expression of biotransformation enzymes in the olfactory organs of Drosophila melanogaster, the antennae. J. Biol. Chem. 1999, 274:10309-10315.
63. Wang L., Dankert H., Perona P., Anderson D.J. A common genetic target for environmental and heritable influences on aggressiveness in Drosophila. Proc. Natl Acad. Sci. U. S. A. 2008, 105(15):5657-5663.
64. Warren J.T., Petryk A., Marques G., Jarcho M., Parvy J.P., Dauphin-Villemant C., et al. Molecular and biochemical characterization of two P450 enzymes in the ecdysteroidogenic pathway of Drosophila melanogaster. Proc. Natl Acad. Sci. U. S. A. 2002, 99:11043-11048.
65. Warren J.T., Petryk A., Marques G., Parvy J.P., Shinoda T., Itoyama K., et al. Phantom encodes the 25-hydroxylase of Drosophila melanogaster and Bombyx mori: a P450 enzyme critical in ecdysone biosynthesis. Insect Biochem. Mol. Biol. 2004, 34:991-1010.
66. Waters L.C., Zelhof A.C., Shaw B.J., Ch'ang L.Y. Possible involvement of the long terminal repeat of transposable element 17.6 in regulating expression of an insecticide resistance-associated P450 gene in Drosophila. Proc. Natl Acad. Sci. U. S. A. 1992, 89:4855-4859.
67. Wen Z.M., Pan L.P., Berenbaum M.R., Schuler M.A. Metabolism of linear and angular furanocoumarins by Papilio polyxenes CYP6B1 co-expressed with NADPH cytochrome P450 reductase. Insect Biochem. Mol. Biol. 2003, 33:937-947.
68. Xia Q., Zhou Z., Lu C., Cheng D., Dai F., Li B., et al. A draft sequence for the genome of the domesticated silkworm (Bombyx mori). Science (New York NY) 2004, 306:1937-1940.
69. Xia Q., Duan J., Wang G., Cheng T., Zha X., Liu C., et al. Microarray-based gene expression profiles in multiple tissues of the domesticated silkworm, Bombyx mori. Genome Biol. 2007, 8:R162.
70. Yamamoto K., Narukawa J., Kadono-Okuda K., Nohata J., Sasanuma M., Suetsugu Y., et al. Construction of a single nucleotide polymorphism linkage map for the silkworm, Bombyx mori, based on bacterial artificial chromosome end sequences. Genet. Mol. Biol. 2006, 173:151-161.
71. Yamamoto K., Nohata J., Kadono-Okuda K., Narukawa J., Sasanuma M., Sasanuma S.I., et al. A BAC-based integrated linkage map of the silkworm Bombyx mori. Genome Biol. 2008, 9:R21.
72. Yamamoto K., Ichinose H., Aso Y., Fujii H. Expression analysis of cytochrome P450s in the silkmoth, Bombyx mori. Pesticide Biochem. Physiol. 2010, 97:1-6.
73. Yang Y., Chen S., Wu S., et al. Constitutive overexpression of multiple cytochrome P450 genes associated with pyrethroid resistance in Helicoverpa armigera. J. Econ. Entomol. 2006, 99(5):1784-1789.
74. Yang P., Tanaka Hiromas, Kuwano Eiichi, Suzuki Koichi A novel cytochrome P450 gene (CYP4G25) of the silkmoth Antheraea yamamai: cloning and expression pattern in pharate first instar larvae in relation to diapauses. J. Insect Physiol. 2008, 54:636-643.
75. Yu Q., Lu C., Li B., Fang S., Zuo W., Dai F., et al. Identification, genomic organization and expression pattern of glutathione S-transferase in the silkworm, Bombyx mori. Insect Biochem. Mol. Biol. 2008, 38:1158-1164.
76. Zhou H., Chen K., Yao Q., Gao L., Wang Y. Molecular cloning of Bombyx mori cytochrome P450 gene and its involvement in fluoride resistance. J. Hazard. Mater. 2008, 160:330-336.