Thermosipho affectus sp. nov., a thermophilic, anaerobic, cellulolytic bacterium isolated from a Mid-Atlantic Ridge hydrothermal vent

International Journal of Systematic and Evolutionary Microbiology

Volumn 61, Issue 5, 2011, Pages 1160-1164

  Podosokorskaya, O A ^a   Kublanov, I V ^a   Reysenbach, A L ^b   Kolganova, T V ^c   Bonch Osmolovskaya, E A ^a  

^a WINOGRADSKY INSTITUTE OF MICROBIOLOGY   (Russian Federation)

^b PORTLAND STATE UNIVERSITY   (United States)

^c INSTITUTE OF BIOENGINEERING   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

ACETIC ACID; BACTERIAL DNA; CARBOHYDRATE; CARBON DIOXIDE; CELLULOSE; CELLULOSE DERIVATIVE; GLUCOSE; RNA 16S; STARCH;

ANAEROBIC BACTERIUM; ARTICLE; BACTERIAL CELL; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATE; BACTERIUM ISOLATION; DNA BASE COMPOSITION; FERMENTATION; GENE SEQUENCE; HYDROTHERMAL VENT; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE HOMOLOGY; THERMOPHILIC BACTERIUM; THERMOSIPHO AFFECTUS;

BACTERIA, ANAEROBIC; CELLULOSE; DNA, BACTERIAL; FATTY ACIDS; HOT TEMPERATURE; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEAWATER;

BACTERIA (MICROORGANISMS); THERMOSIPHO;

EID: 79955838819     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.025197-0     Document Type: Article

References (25)

1. Antoine, E., Cilia, V., Meunier, J. R., Guezennec, J., Lesongeur, F. & Barbier, G. (1997). Thermosipho melanesiensis sp. nov., a new thermophilic anaerobic bacterium belonging to the order Thermotogales, isolated from deep-sea hydrothermal vents in the southwestern Pacific Ocean. Int J Syst Bacteriol 47, 1118-1123.
2. Bonch-Osmolovskaya, E. A., Sokolova, T. G., Kostrikina, N. A. & Zavarzin, G. A. (1990). Desulfurella acetovorans gen. nov., sp. nov. - a new thermophilic sulfur-reducing eubacterium. Arch Microbiol 153, 151-155.
3. Chun, J., Lee, J.-H., Jung, Y., Kim, M., Kim, S., Kim, B. K. & Lim, Y. W. (2007). EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57, 2259-2261.
4. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791
5. Gerhardt, P., Murray, R. E. G., Wood, W. A. & Krieg, N. R. (editors) (1994). Methods for General and Molecular Bacteriology. Washington, DC: American Society for Microbiology.
6. Huber, R. & Hannig, M. (2006). Thermotogales. In The Prokaryotes, 3rd edn, vol. 7,pp. 899-922.Edited by M.Dworkin, S.Falkow, E.Rosenberg, K. H. Schleifer & E. Stackebrandt. Singapore: Springer.
7. Huber, R. & Stetter, K. O. (1992). The Thermotogales: hyper- thermophilic and extremely thermophilic bacteria. In Thermophilic bacteria, pp. 185-194. Edited by J. K. Kristjansson. Boca Raton, FL: CRC Press.
8. Huber, R. & Stetter, K. O. (1999). Thermotogales. In Embryonic Encyclopedia of Life Sciences. London: Nature Publishing Group. http://www.els.net.
9. Huber, R., Woese, C. R., Langworthy, T. A., Fricke, H. & Stetter, K. O. (1989). Thermosipho africanus gen. nov., represents a new genus of thermophilic eubacteria within the 'Thermotogales'. Syst Appl Microbiol 12, 32-37.
10. Kevbrin, V. V. & Zavarzin, G. A. (1992). The effect of sulfur compounds on growth of halophilic homoacetic bacterium Acetohalobium arabaticum. Microbiology 61, 563-567. (English translation of Mikrobiologiya).
11. L'Haridon, S. L., Miroshnichenko, M. L., Hippe, H., Fardeau, M.-L., Bonch-Osmolovskaya, E., Stackebrandt, E. & Jeanthon, C. (2001). Thermosipho geolei sp. nov., a thermophilic bacterium isolated from a continental petroleum reservoir in Western Siberia. Int J Syst Evol Microbiol 51, 1327-1334.
12. Marmur, J. & Doty, P. (1962). Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 5, 109-118.
13. Miroshnichenko, M. L., Kublanov, I. V., Kostrikina, N. A., Tourova, T. P., Kolganova, T. V., Birkeland, N. K. &Bonch-Osmolovskaya, E. A. (2008). Caldicellulosiruptor kronotskyensis sp. nov. and Caldicellulosiruptor hydrothermalis sp. nov., two extremely thermo- philic, cellulolytic, anaerobic bacteria from Kamchatka thermal springs. Int J Syst Evol Microbiol 58, 1492-1496.
14. Park, D. (2007). Genomic DNA isolation from different biological materials. In Methods in Molecular Biology, vol. 353: Protocols for Nucleic Acid Analysis by Nonradioactive Probes, 2nd edn, pp. 3-14. Edited by E. Hilario & J. Mackay. Totowa, NJ: Humana Press.
15. Ravot, G., Ollivier, B., Patel, B. K. C., Magot, M. & Garcia, J.-L. (1996). Emended description of Thermosipho africanus as a carbohydrate- fermenting species using thiosulfate as an electron acceptor. Int J Syst Bacteriol 46, 321-323.
16. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
17. Sako, Y., Takai, K., Ishida, Y., Uchida, A. & Katayama, Y. (1996). Rhodothermus obamensis sp. nov., a modern lineage of ex- tremely thermophilic marine bacteria. Int J Syst Bacteriol 46, 1099- 1104.
18. Sokolova, T. G., Kostrikina, N. A., Chernyh, N. A., Tourova, T. P., Kolganova, T. V. & Bonch-Osmolovskaya, E. A. (2002). Carboxydocella thermautotrophica gen. nov., sp. nov., a novel anaerobic, CO-utilizing thermophile from a Kamchatkan hot spring. Int J Syst Evol Microbiol 52, 1961-1967.
19. Takai, K. & Horikoshi, K. (2000). Thermosipho japonicus sp. nov., an extremely thermophilic bacterium isolated from a deep-sea hydro- thermal vent in Japan. Extremophiles 4, 9-17.
20. Tamura, K., Nei, M. & Kumar, S. (2004). Prospects for inferring very large phylogenies by using the neighbor-joining method. Proc Natl Acad Sci U S A 101, 11030-11035.
21. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599.
22. Trüper, H. G. & Schlegel, H. G. (1964). Sulphur metabolism in Thiorhodaceae. I. Quantitative measurements on growing cells of Chromatium okenii. Antonie van Leeuwenhoek 30, 225-228.
23. Urios, L., Cueff-Gauchard, V., Pignet, P., Postec, A., Fardeau, M.-L., Ollivier, B. & Barbier, G. (2004). Thermosipho atlanticus sp. nov., a novel member of the Thermotogales isolated from a Mid- Atlantic Ridge hydrothermal vent. Int J Syst Evol Microbiol 54, 1953- 1957.
24. Woese, C. R., Kandler, O. & Wheelis, M. L. (1990). Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. Proc Natl Acad Sci U S A 87, 4576-4579.
25. Wolin, E. A., Wolin, M. J. & Wolfe, R. S. (1963). Formation of methane by bacterial extracts. J Biol Chem 238, 2882-2886.