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Volumn 6623 LNCS, Issue , 2011, Pages 37-47

Applying linear models to learn regulation programs in a transcription regulatory module network

Author keywords

[No Author keywords available]

Indexed keywords

BENCHMARK DATASETS; COMMON STRATEGY; GENE EXPRESSION DATA; LINEAR MODEL; MODULE NETWORKS; REGRESSION TREES; TRANSCRIPTIONAL REGULATORY NETWORKS;

EID: 79955780195     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-642-20389-3_4     Document Type: Conference Paper
Times cited : (3)

References (17)
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    • The Level of DAL80 Expression Down-Regulates GATA Factor-Mediated Transcription in Saccharomyces cerevisiae
    • Cunningham, T.S., Rai, R., Cooper, T.G.: The Level of DAL80 Expression Down-Regulates GATA Factor-Mediated Transcription in Saccharomyces cerevisiae. J. Bacteriol. 182(23), 6584-6591 (2000)
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    • Inferring Cellular Networks Using Probabilistic Graphical Models
    • Friedman, N.: Inferring Cellular Networks Using Probabilistic Graphical Models. Science 303(5659), 799-805 (2004)
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    • Friedman, N.1
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    • Module networks revisited: Computational assessment and prioritization of model predictions
    • Joshi, A., De Smet, R., Marchal, K., Van de Peer, Y., Michoel, T.: Module networks revisited: computational assessment and prioritization of model predictions. Bioinformatics 25(4), 490-496 (2009)
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    • Joshi, A.1    De Smet, R.2    Marchal, K.3    Van De Peer, Y.4    Michoel, T.5
  • 9
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    • Analysis of a Gibbs sampler method for model-based clustering of gene expression data
    • Joshi, A., Van de Peer, Y., Michoel, T.: Analysis of a Gibbs sampler method for model-based clustering of gene expression data. Bioinformatics 24(2), 176-183 (2008)
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    • Joshi, A.1    Van De Peer, Y.2    Michoel, T.3
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    • Regulatory module network of basic/helix-loop-helix transcription factors in mouse brain
    • Li, J., Liu, Z.J., Pan, Y.C., Liu, Q., Fu, X., Cooper, N.G., Li, Y., Qiu, M., Shi, T.: Regulatory module network of basic/helix-loop-helix transcription factors in mouse brain. Genome Biol. 8(11), R244 (2007)
    • (2007) Genome Biol. , vol.8 , Issue.11
    • Li, J.1    Liu, Z.J.2    Pan, Y.C.3    Liu, Q.4    Fu, X.5    Cooper, N.G.6    Li, Y.7    Qiu, M.8    Shi, T.9
  • 15
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    • Module networks: Identifying regulatory modules and their condition-specific regulators from gene expression data
    • Segal, E., Shapira, M., Regev, A., Pe'er, D., Botstein, D., Koller, D., Friedman, N.: Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data. Nature Genetics 34(2), 166-176 (2003)
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