-
1
-
-
0842288337
-
Inferring Cellular Networks Using Probabilistic Graphical Models
-
N. Friedman, "Inferring Cellular Networks Using Probabilistic Graphical Models," Science, vol. 303, no. 5659, pp. 799-805, 2004.
-
(2004)
Science
, vol.303
, Issue.5659
, pp. 799-805
-
-
Friedman, N.1
-
2
-
-
33846400424
-
Large-Scale Mapping and Validation of Escherichia coli Transcriptional Regulation from a Compendium of Expression Profiles
-
J. J. Faith, B. Hayete, J. T. Thaden, I. Mogno, J. Wierzbowski, G. Cottarel, S. Kasif, J. J. Collins, and T. S. Gardner, "Large-Scale Mapping and Validation of Escherichia coli Transcriptional Regulation from a Compendium of Expression Profiles," PLoS Biology, vol. 5, no. 1, pp. 54-66, 2007.
-
(2007)
PLoS Biology
, vol.5
, Issue.1
, pp. 54-66
-
-
Faith, J.J.1
Hayete, B.2
Thaden, J.T.3
Mogno, I.4
Wierzbowski, J.5
Cottarel, G.6
Kasif, S.7
Collins, J.J.8
Gardner, T.S.9
-
3
-
-
0032441150
-
Cluster analysis and display of genome-wide expression patterns
-
M. B. Eisen, P. T. Spellman, P. O. Brown, and D. Botstein, "Cluster analysis and display of genome-wide expression patterns," Proceedings of the National Academy of Sciences of the United States of America, vol. 95, no. 25, pp. 14863-14868, 1998.
-
(1998)
Proceedings of the National Academy of Sciences of the United States of America
, vol.95
, Issue.25
, pp. 14863-14868
-
-
Eisen, M.B.1
Spellman, P.T.2
Brown, P.O.3
Botstein, D.4
-
4
-
-
0033707946
-
Using Bayesian networks to analyze expression data
-
N. Friedman, M. Linial, and I. Nachman, "Using Bayesian networks to analyze expression data," Journal of Computational Biology, vol. 7, no. 3-4, pp. 601-620, 2000.
-
(2000)
Journal of Computational Biology
, vol.7
, Issue.3-4
, pp. 601-620
-
-
Friedman, N.1
Linial, M.2
Nachman, I.3
-
5
-
-
0035237805
-
Rich probabilistic models for gene expression
-
E. Segal, B. Taskar, A. Gasch, N. Friedman, and D. Koller, "Rich probabilistic models for gene expression," Bioinformatics, vol. 17, no. suppl 1, pp. S243-252, 2001.
-
(2001)
Bioinformatics
, vol.17
, Issue.SUPPL. 1
-
-
Segal, E.1
Taskar, B.2
Gasch, A.3
Friedman, N.4
Koller, D.5
-
6
-
-
34249845809
-
Validating module network learning algorithms using simulated data
-
T. Michoel, S. Maere, E. Bonnet, A. Joshi, Y. Saeys, T. Van den Bulcke, K. Van Leemput, P. van Remortel, M. Kuiper, K. Marchal, and Y. Van de Peer, "Validating module network learning algorithms using simulated data," BMC Bioinformatics, vol. 8, no. Suppl 2, p. S5, 2007.
-
(2007)
BMC Bioinformatics
, vol.8
, Issue.SUPPL. 2
-
-
Michoel, T.1
Maere, S.2
Bonnet, E.3
Joshi, A.4
Saeys, Y.5
Van Den Bulcke, T.6
Van Leemput, K.7
Van Remortel, P.8
Kuiper, M.9
Marchal, K.10
Van De Peer, Y.11
-
7
-
-
21844455527
-
Learning module networks
-
E. Segal, D. Pe'er, A. Regev, D. Koller, and N. Friedman, "Learning module networks," Journal of Machine Learning Research, vol. 6, pp. 557-588, 2005.
-
(2005)
Journal of Machine Learning Research
, vol.6
, pp. 557-588
-
-
Segal, E.1
Pe'er, D.2
Regev, A.3
Koller, D.4
Friedman, N.5
-
8
-
-
0037941585
-
Module networks: Identifying regulatory modules and their condition-specific regulators from gene expression data
-
June
-
E. Segal, M. Shapira, A. Regev, D. Pe'er, D. Botstein, D. Koller, and N. Friedman, "Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data.," Nature Genetics, vol. 34, pp. 166-176, June 2003.
-
(2003)
Nature Genetics
, vol.34
, pp. 166-176
-
-
Segal, E.1
Shapira, M.2
Regev, A.3
Pe'er, D.4
Botstein, D.5
Koller, D.6
Friedman, N.7
-
9
-
-
46349096129
-
Regulatory module network of basic/helix-loop-helix transcription factors in mouse brain
-
J. Li, Z. J. Liu, Y. C. Pan, Q. Liu, X. Fu, N. G. Cooper, Y. Li, M. Qiu, and T. Shi, "Regulatory module network of basic/helix-loop-helix transcription factors in mouse brain," Genome Biol, vol. 8, no. 11, p. R244, 2007.
-
(2007)
Genome Biol
, vol.8
, Issue.11
-
-
Li, J.1
Liu, Z.J.2
Pan, Y.C.3
Liu, Q.4
Fu, X.5
Cooper, N.G.6
Li, Y.7
Qiu, M.8
Shi, T.9
-
10
-
-
0002629270
-
Maximum likelihood from incomplete data via the EM algorithm
-
A. P. Dempster, N. M. Laird, and D. B. Rubin, "Maximum likelihood from incomplete data via the EM algorithm," Journal of the Royal Statistical Society. Series B (Methodological), vol. 39, no. 1, pp. 1-38, 1977.
-
(1977)
Journal of the Royal Statistical Society. Series B (Methodological)
, vol.39
, Issue.1
, pp. 1-38
-
-
Dempster, A.P.1
Laird, N.M.2
Rubin, D.B.3
-
12
-
-
60149110901
-
Module networks revisited: Computational assessment and prioritization of model predictions
-
A. Joshi, R. De Smet, K. Marchal, Y. Van de Peer, and T. Michoel, "Module networks revisited: computational assessment and prioritization of model predictions," Bioinformatics, vol. 25, no. 4, pp. 490-496, 2009.
-
(2009)
Bioinformatics
, vol.25
, Issue.4
, pp. 490-496
-
-
Joshi, A.1
De Smet, R.2
Marchal, K.3
Van De Peer, Y.4
Michoel, T.5
-
13
-
-
38349122751
-
Analysis of a Gibbs sampler method for model-based clustering of gene expression data
-
A. Joshi, Y. Van de Peer, and T. Michoel, "Analysis of a Gibbs sampler method for model-based clustering of gene expression data," Bioinformatics, vol. 24, no. 2, pp. 176-183, 2008.
-
(2008)
Bioinformatics
, vol.24
, Issue.2
, pp. 176-183
-
-
Joshi, A.1
Van De Peer, Y.2
Michoel, T.3
-
14
-
-
21844520724
-
Bayesian graphical models for discrete data
-
D. Madigan, J. York, and D. Allard, "Bayesian graphical models for discrete data," International Statistical Review, vol. 63, no. 2, pp. 215-232, 1995.
-
(1995)
International Statistical Review
, vol.63
, Issue.2
, pp. 215-232
-
-
Madigan, D.1
York, J.2
Allard, D.3
-
16
-
-
33144486498
-
Syntren: A generator of synthetic gene expression data for design and analysis of structure learning algorithms
-
T. Van den Bulcke, K. Van Leemput, B. Naudts, P. van Remortel, H. Ma, A. Verschoren, B. De Moor, and K. Marchal, "Syntren: a generator of synthetic gene expression data for design and analysis of structure learning algorithms," BMC Bioinformatics, vol. 7, no. 1, p. 43, 2006.
-
(2006)
BMC Bioinformatics
, vol.7
, Issue.1
, pp. 43
-
-
Van Den Bulcke, T.1
Van Leemput, K.2
Naudts, B.3
Van Remortel, P.4
Ma, H.5
Verschoren, A.6
De Moor, B.7
Marchal, K.8
-
17
-
-
0033637153
-
Genomic Expression Programs in the Response of Yeast Cells to Environmental Changes
-
A. P. Gasch, P. T. Spellman, C. M. Kao, O. Carmel-Harel, M. B. Eisen, G. Storz, D. Botstein, and P. O. Brown, "Genomic Expression Programs in the Response of Yeast Cells to Environmental Changes," Mol. Biol. Cell, vol. 11, no. 12, pp. 4241-4257, 2000.
-
(2000)
Mol. Biol. Cell
, vol.11
, Issue.12
, pp. 4241-4257
-
-
Gasch, A.P.1
Spellman, P.T.2
Kao, C.M.3
Carmel-Harel, O.4
Eisen, M.B.5
Storz, G.6
Botstein, D.7
Brown, P.O.8
-
18
-
-
38549135468
-
YEASTRACTDISCOVERER: New tools to improve the analysis of transcriptional regulatory associations in Saccharomyces cerevisiae
-
P. T. Monteiro, N. D. Mendes, M. C. Teixeira, S. d'Orey, S. Tenreiro, N. P. Mira, H. Pais, A. P. Francisco, A. M. Carvalho, A. B. Lourenco, I. Sa-Correia, A. L. Oliveira, and A. T. Freitas, "YEASTRACTDISCOVERER: new tools to improve the analysis of transcriptional regulatory associations in Saccharomyces cerevisiae," Nucl. Acids Res., vol. 36, no. suppl 1, pp. D132-136, 2008.
-
(2008)
Nucl. Acids Res.
, vol.36
, Issue.SUPPL. 1
-
-
Monteiro, P.T.1
Mendes, N.D.2
Teixeira, M.C.3
D'Orey, S.4
Tenreiro, S.5
Mira, N.P.6
Pais, H.7
Francisco, A.P.8
Carvalho, A.M.9
Lourenco, A.B.10
Sa-Correia, I.11
Oliveira, A.L.12
Freitas, A.T.13
-
19
-
-
0031858914
-
SGD: Saccharomyces Genome Database
-
J. Cherry, C. Adler, C. Ball, S. Chervitz, S. Dwight, E. Hester, Y. Jia, G. Juvik, T. Roe, M. Schroeder, S. Weng, and D. Botstein, "SGD: Saccharomyces Genome Database," Nucl. Acids Res., vol. 26, no. 1, pp. 73-79, 1998.
-
(1998)
Nucl. Acids Res.
, vol.26
, Issue.1
, pp. 73-79
-
-
Cherry, J.1
Adler, C.2
Ball, C.3
Chervitz, S.4
Dwight, S.5
Hester, E.6
Jia, Y.7
Juvik, G.8
Roe, T.9
Schroeder, M.10
Weng, S.11
Botstein, D.12
-
20
-
-
34249774309
-
Reconstructing gene regulatory networks with Bayesian networks by combining expression data with multiple sources of prior knowledge
-
A. V. Werhli and D. Husmeier, "Reconstructing gene regulatory networks with Bayesian networks by combining expression data with multiple sources of prior knowledge," Statistical Applications in Genetics and Molecular Biology, vol. 6, no. 1, 2007.
-
(2007)
Statistical Applications in Genetics and Molecular Biology
, vol.6
, Issue.1
-
-
Werhli, A.V.1
Husmeier, D.2
|