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Volumn 134, Issue 16, 2011, Pages

A permeation theory for single-file ion channels: One- and two-step models

Author keywords

[No Author keywords available]

Indexed keywords

ASYMMETRIC VARIANTS; ATOMISTIC SIMULATIONS; CHANNEL BEHAVIOR; CHANNEL OCCUPANCY; ELEMENTARY STEPS; FIRST-ORDER; ION CHANNEL; LARGE GROUPS; LOW VOLTAGES; MD SIMULATION; NEGATIVE CURRENTS; OHMIC BEHAVIOR; OHMIC CURRENTS; PERMEATION DATA; PERMEATION EXPERIMENTS; PHYSIOLOGICAL CONCENTRATIONS; POSITIVE VOLTAGE; POTASSIUM CHANNELS; QUALITATIVE CHANGES; QUANTITATIVE COMPARISON; RATE DETERMINING STEP; SHAKER POTASSIUM CHANNEL; SIMULATED SYSTEM; SIMULATION DATA; THEORETICAL FRAMEWORK; TWO-PARAMETER MODELS; TWO-STEP MODEL; VOLTAGE DATA;

EID: 79955698004     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.3580562     Document Type: Article
Times cited : (45)

References (66)
  • 2
    • 0242657337 scopus 로고    scopus 로고
    • Potassium channels
    • DOI 10.1016/S0014-5793(03)01104-9
    • R. MacKinnon, FEBS Lett. 555 (1), 62 (2003). 10.1016/S0014-5793(03)01104- 9 (Pubitemid 37431098)
    • (2003) FEBS Letters , vol.555 , Issue.1 , pp. 62-65
    • MacKinnon, R.1
  • 4
    • 0037461514 scopus 로고    scopus 로고
    • 10.1063/1.1522709
    • P. H. Nelson, J. Chem. Phys. 117 (24), 11396 (2002). 10.1063/1.1522709
    • (2002) J. Chem. Phys. , vol.117 , Issue.24 , pp. 11396
    • Nelson, P.H.1
  • 5
    • 0142084695 scopus 로고    scopus 로고
    • 10.1063/1.1604112
    • P. H. Nelson, J. Chem. Phys. 119 (13), 6981 (2003). 10.1063/1.1604112
    • (2003) J. Chem. Phys. , vol.119 , Issue.13 , pp. 6981
    • Nelson, P.H.1
  • 7
    • 0034036372 scopus 로고    scopus 로고
    • 10.1016/S0006-3495(00)76616-1
    • I. H. Shrivastava and M. S. Sansom, Biophys. J. 78 (2), 557 (2000). 10.1016/S0006-3495(00)76616-1
    • (2000) Biophys. J. , vol.78 , Issue.2 , pp. 557
    • Shrivastava, I.H.1    Sansom, M.S.2
  • 8
    • 0042213113 scopus 로고    scopus 로고
    • 10.1016/S0006-3495(00)76831-7
    • S. Bernche and B. Roux, Biophys. J. 78 (6), 2900 (2000). 10.1016/S0006-3495(00)76831-7
    • (2000) Biophys. J. , vol.78 , Issue.6 , pp. 2900
    • Bernche, S.1    Roux, B.2
  • 9
    • 0034647669 scopus 로고    scopus 로고
    • + channel
    • DOI 10.1016/S0014-5793(00)01712-9, PII S0014579300017129
    • L. Guidoni, V. Torre, and P. Carloni, FEBS Lett. 477 (1-2), 37 (2000). 10.1016/S0014-5793(00)01712-9 (Pubitemid 30438854)
    • (2000) FEBS Letters , vol.477 , Issue.1-2 , pp. 37-42
    • Guidoni, L.1    Torre, V.2    Carloni, P.3
  • 10
    • 0035575826 scopus 로고    scopus 로고
    • Brownian dynamics study of an open-state KcsA potassium channel
    • DOI 10.1016/S0005-2736(01)00395-9, PII S0005273601003959
    • T. W. Allen and S. H. Chung, Biochim. Biophys. Acta 1515 (2), 83 (2001). 10.1016/S0005-2736(01)00395-9 (Pubitemid 33086825)
    • (2001) Biochimica et Biophysica Acta - Biomembranes , vol.1515 , Issue.2 , pp. 83-91
    • Allen, T.W.1    Chung, S.H.2
  • 17
    • 0035498860 scopus 로고    scopus 로고
    • + channel
    • DOI 10.1038/35102067
    • S. Bernche and B. Roux, Nature (London) 414 (6859), 73 (2001). 10.1038/35102067 (Pubitemid 33041625)
    • (2001) Nature , vol.414 , Issue.6859 , pp. 73-77
    • Berneche, S.1    Roux, B.2
  • 18
    • 0000060097 scopus 로고
    • 10.1103/PhysRevA.8.3050 LP
    • D. G. Levitt, Phys. Rev. A 8 (6), 3050 LP (1973). 10.1103/PhysRevA.8.3050
    • (1973) Phys. Rev. A , vol.8 , Issue.6 , pp. 3050
    • Levitt, D.G.1
  • 23
    • 33748263658 scopus 로고
    • 10.1016/S0140-6736(55)92468-5
    • A. L. Hodgkin and R. D. Keynes, J. Physiol. 128, 61 (1955). 10.1016/S0140-6736(55)92468-5
    • (1955) J. Physiol. , vol.128 , pp. 61
    • Hodgkin, A.L.1    Keynes, R.D.2
  • 25
    • 0033167242 scopus 로고    scopus 로고
    • Modeling tracer counter-permeation through anisotropic zeolite membranes: From mean field theory to single-file diffusion
    • DOI 10.1016/S1385-8947(99)00052-2, PII S1385894799000522
    • P. H. Nelson and S. M. Auerbach, Chem. Eng. J. 74, 43 (1999). 10.1016/S1385-8947(99)00052-2 (Pubitemid 29435318)
    • (1999) Chemical Engineering Journal , vol.74 , Issue.1-2 , pp. 43-56
    • Nelson, P.H.1    Auerbach, S.M.2
  • 26
    • 0035498849 scopus 로고    scopus 로고
    • See potassium run
    • DOI 10.1038/35102126
    • C. Miller, Nature (London) 414 (6859), 23 (2001). 10.1038/35102126 (Pubitemid 33041604)
    • (2001) Nature , vol.414 , Issue.6859 , pp. 23-24
    • Miller, C.1
  • 27
    • 79955679390 scopus 로고    scopus 로고
    • A favorite apparatus of first-year physics instructors for demonstrating momentum conservation during collisions.
    • A favorite apparatus of first-year physics instructors for demonstrating momentum conservation during collisions.
  • 30
    • 58149162833 scopus 로고    scopus 로고
    • 10.1529/biophysj.108.136499
    • B. Roux, Biophys. J. 95 (9), 4205 (2008). 10.1529/biophysj.108.136499
    • (2008) Biophys. J. , vol.95 , Issue.9 , pp. 4205
    • Roux, B.1
  • 31
    • 79955690580 scopus 로고    scopus 로고
    • A reviewer of this manuscript noted that Ref. reported calculating the applied voltage by multiplying the applied field E by the 13.4 length of the selectivity filter, whereas according to Roux Ref. the applied voltage should be obtained by multiplying the applied field E by the full length of the periodic box. If this is correct, then the simulation voltages reported by are underestimated by a factor of about 6. A fit to these rescaled simulation voltage data results in a value of reduced by a factor of about 6, but the fitted current-voltage curve retains the same basic shape and fit as in Fig. (for positive voltages).
    • A reviewer of this manuscript noted that Jensen Ref. reported calculating the applied voltage by multiplying the applied field E by the 13.4 length of the selectivity filter, whereas according to Roux Ref. the applied voltage should be obtained by multiplying the applied field E by the full length of the periodic box. If this is correct, then the simulation voltages reported by Jensen are underestimated by a factor of about 6. A fit to these rescaled simulation voltage data results in a value of reduced by a factor of about 6, but the fitted current-voltage curve retains the same basic shape and fit as in Fig. (for positive voltages).
    • Jensen1    Jensen2
  • 32
    • 79955690745 scopus 로고    scopus 로고
    • However, the last two occurrences of state m are brief and may also be considered as transition states in a four ion knock-on mechanism.
    • However, the last two occurrences of state m are brief and may also be considered as transition states in a four ion knock-on mechanism.
  • 37
    • 0027484056 scopus 로고
    • 10.1016/S0006-3495(93)81244-X
    • L. Heginbotham and R. MacKinnon, Biophys. J. 65 (5), 2089 (1993). 10.1016/S0006-3495(93)81244-X
    • (1993) Biophys. J. , vol.65 , Issue.5 , pp. 2089
    • Heginbotham, L.1    MacKinnon, R.2
  • 39
    • 0021925981 scopus 로고
    • 10.1016/S0006-3495(85)83803-0
    • S. Cukierman, G. Yellen, and C. Miller, Biophys. J. 48 (3), 477 (1985). 10.1016/S0006-3495(85)83803-0
    • (1985) Biophys. J. , vol.48 , Issue.3 , pp. 477
    • Cukierman, S.1    Yellen, G.2    Miller, C.3
  • 46
    • 79955682502 scopus 로고    scopus 로고
    • Because of the nonlinear transformation used for j and c, the moderate errors at the highest values of c for the c 150 mM experimental data in Fig. actually correspond to small errors in the lowest experimental currents in Fig..
    • Because of the nonlinear transformation used for j and c, the moderate errors at the highest values of c for the c 150 mM experimental data in Fig. actually correspond to small errors in the lowest experimental currents in Fig..
  • 47
    • 2542474454 scopus 로고    scopus 로고
    • 10.1103/PhysRevE.68.061908
    • P. H. Nelson, Phys. Rev. E 68 (6-1), 061908 (2003). 10.1103/PhysRevE.68. 061908
    • (2003) Phys. Rev. e , vol.68 , Issue.61 , pp. 061908
    • Nelson, P.H.1
  • 48
    • 0038170314 scopus 로고    scopus 로고
    • Permeation and Selectivity in Calcium Channels
    • DOI 10.1146/annurev.physiol.65.092101.142345
    • W. A. Sather and E. W. McCleskey, Annu. Rev. Physiol. 65, 133 (2003). 10.1146/annurev.physiol.65.092101.142345 (Pubitemid 38249150)
    • (2003) Annual Review of Physiology , vol.65 , pp. 133-159
    • Sather, W.A.1    McCleskey, E.W.2
  • 49
  • 50
    • 4143116650 scopus 로고    scopus 로고
    • Computational studies of membrane channels
    • DOI 10.1016/j.str.2004.06.013, PII S0969212604002461
    • B. Roux and K. Schulten, Structure 12 (8), 1343 (2004). 10.1016/j.str.2004.06.013 (Pubitemid 39092079)
    • (2004) Structure , vol.12 , Issue.8 , pp. 1343-1351
    • Roux, B.1    Schulten, K.2
  • 51
    • 4544342928 scopus 로고    scopus 로고
    • Potassium channels and the atomic basis of selective ion conduction (nobel lecture)
    • DOI 10.1002/anie.200400662
    • R. MacKinnon, Angew. Chem., Int. Ed. Engl. 43 (33), 4265 (2004). 10.1002/anie.200400662 (Pubitemid 39257401)
    • (2004) Angewandte Chemie - International Edition , vol.43 , Issue.33 , pp. 4265-4277
    • MacKinnon, R.1
  • 52
    • 35649001607 scopus 로고
    • 10.1098/rspb.1952.0054
    • A. L. Hodgkin and A. F. Huxley, J. Physiol. 117 (4), 500 (1952). 10.1098/rspb.1952.0054
    • (1952) J. Physiol. , vol.117 , Issue.4 , pp. 500
    • Hodgkin, A.L.1    Huxley, A.F.2
  • 54
    • 0018117903 scopus 로고
    • 10.1085/jg72.4.409
    • B. Hille and W. Schwarz, J. Gen. Physiol. 72 (4), 409 (1978). 10.1085/jgp.72.4.409
    • (1978) J. Gen. Physiol. , vol.72 , Issue.4 , pp. 409
    • Hille, B.1    Schwarz, W.2
  • 55
    • 20844461008 scopus 로고    scopus 로고
    • Kinetic modeling of ion conduction in KcsA potassium channel
    • DOI 10.1063/1.1913502, 204712
    • S. Mafe, J. Pellicer, and J. Cervera, J. Chem. Phys. 122 (20), 204712 (2005). 10.1063/1.1913502 (Pubitemid 40858522)
    • (2005) Journal of Chemical Physics , vol.122 , Issue.20 , pp. 1-8
    • Mafe, S.1    Pellicer, J.2    Cervera, J.3
  • 60
    • 34347371786 scopus 로고    scopus 로고
    • Ion conductance vs. pore gating and selectivity in KcsA channel: Modeling achievements and perspectives
    • DOI 10.1007/s00894-007-0202-y, International conference and workshop: Modeling and Design of Molecular Materials, 10-15 September 2006, Wrocklaw, Poland
    • C. Boiteux, S. Kraszewski, C. Ramseyer, and C. Girardet, J. Mol. Model 13 (6-7), 699 (2007). 10.1007/s00894-007-0202-y (Pubitemid 47023394)
    • (2007) Journal of Molecular Modeling , vol.13 , Issue.6-7 , pp. 699-713
    • Boiteux, C.1    Kraszewski, S.2    Ramseyer, C.3    Girardet, C.4
  • 62
    • 0033021781 scopus 로고    scopus 로고
    • 10.1016/S0006-3495(99)77242-5
    • A. Syganow and E. von Kitzing, Biophys. J. 76 (2), 768 (1999). 10.1016/S0006-3495(99)77242-5
    • (1999) Biophys. J. , vol.76 , Issue.2 , pp. 768
    • Syganow, A.1    Von Kitzing, E.2
  • 63
    • 0020630896 scopus 로고
    • 10.1016/S0006-3495(83)84416-6
    • O. S. Andersen, Biophys. J. 41 (2), 147 (1983). 10.1016/S0006-3495(83) 84416-6
    • (1983) Biophys. J. , vol.41 , Issue.2 , pp. 147
    • Andersen, O.S.1
  • 64
    • 0020538940 scopus 로고
    • 10.1016/S0006-3495(83)84415-4
    • O. S. Andersen, Biophys. J. 41 (2), 135 (1983). 10.1016/S0006-3495(83) 84415-4
    • (1983) Biophys. J. , vol.41 , Issue.2 , pp. 135
    • Andersen, O.S.1
  • 65
    • 0020630895 scopus 로고
    • 10.1016/S0006-3495(83)84414-2
    • O. S. Andersen, Biophys. J. 41 (2), 119 (1983). 10.1016/S0006-3495(83) 84414-2
    • (1983) Biophys. J. , vol.41 , Issue.2 , pp. 119
    • Andersen, O.S.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.