메뉴 건너뛰기




Volumn 5, Issue 7, 2010, Pages 581-594

Morphological and molecular characterization of polycentric rumen fungi belonging to the genus Orpinomyces isolated from Indian cattle and buffaloes

Author keywords

Anaerobic fungi; Characterization; Fiber digestion; Hydrolytic enzymes; Phylogenetic diversity; Ribosomal DNA; Sequences

Indexed keywords

BOS; BUBALUS; FUNGI; NEOCALLIMASTIX; ORPINOMYCES; ORPINOMYCES JOYONII; PIROMYCES;

EID: 79955667200     PISSN: 18164935     EISSN: None     Source Type: Journal    
DOI: 10.3923/jm.2010.581.594     Document Type: Article
Times cited : (8)

References (42)
  • 1
    • 0018848792 scopus 로고
    • Evaluation by electron microscopy and anaerobic culture of types of rumen bacteria associated with digestion of forage cell walls
    • Akin, D.E., 1980. Evaluation by electron microscopy and anaerobic culture of types of rumen bacteria associated with digestion of forage cell walls. Env iron. Microbiol., 39: 242-252.
    • (1980) Env iron. Microbiol. , vol.39 , pp. 242-252
    • Akin, D.E.1
  • 2
    • 0001635857 scopus 로고
    • Morphology and development of rumen fungi: Neocallimastix sp., Piromyces communis and Orpinomyces bovis gen. nov., sp. nov
    • Barr, D.J.S., H. Kudo, K.D. Jakober and K.J. Cheng, 1989. Morphology and development of rumen fungi: Neocallimastix sp., Piromyces communis and Orpinomyces bovis gen. nov., sp. nov. J. Bot., 67: 2815-2824.
    • (1989) J. Bot. , vol.67 , pp. 2815-2824
    • Barr, D.J.S.1    Kudo, H.2    Jakober, K.D.3    Cheng, K.J.4
  • 3
    • 0024657936 scopus 로고
    • Fermentation products and plant cell wall-degrading enzymes produced by monocentric and polycentric anaerobic ruminal fungi
    • Bomeman, W.S., D.E. Akin and L.G. Ljungdahl, 1989. Fermentation products and plant cell wall-degrading enzymes produced by monocentric and polycentric anaerobic ruminal fungi. Applied Environ. Microbiol., 55: 1066-1073.
    • (1989) Applied Environ. Microbiol. , vol.55 , pp. 1066-1073
    • Bomeman, W.S.1    Akin, D.E.2    Ljungdahl, L.G.3
  • 4
    • 0026590102 scopus 로고
    • Molecular evolution of the fungi: Relationships of the Basidiomycetes, Ascomycetes and Chytridiomycetes
    • Bowman, B.H., J.W. Taylor, A.G. Brownlee, J. Lee, S.D. Lu and T.J. White, 1992. Molecular evolution of the fungi: Relationships of the Basidiomycetes, Ascomycetes and Chytridiomycetes. Mol. Biol. Evol., 9: 285-296.
    • (1992) Mol. Biol. Evol. , vol.9 , pp. 285-296
    • Bowman, B.H.1    Taylor, J.W.2    Brownlee, A.G.3    Lee, J.4    Lu, S.D.5    White, T.J.6
  • 5
    • 0024652084 scopus 로고
    • Morphological and metabolic characterization of a new species of strictly anaerobic rumen fungus: Neocallimastix joyoni
    • Breton, A., A. Bernalier, F. Bonnemoy, G. Fonty, B. Gaillard and P.H. Gouet, 1989. Morphological and metabolic characterization of a new species of strictly anaerobic rumen fungus: Neocallimastix joyoni. FEMS Microbiol. Lett., 58: 309-314.
    • (1989) FEMS Microbiol. Lett. , vol.58 , pp. 309-314
    • Breton, A.1    Bernalier, A.2    Bonnemoy, F.3    Fonty, G.4    Gaillard, B.5    Gouet, P.H.6
  • 6
    • 0029121783 scopus 로고
    • Location by fluorescence microscopy of glycosidases and a xylanase in the anaerobic gut fungi Caecomyces communis, Neocallimastix frontal is and Piromyces rhizinfita
    • Breton, A., B. Gaillard-Martinie, C. Gerbi, B.G. de Segura, R. Durand and B. Kherratia, 1995. Location by fluorescence microscopy of glycosidases and a xylanase in the anaerobic gut fungi Caecomyces communis, Neocallimastix frontal is and Piromyces rhizinfita. Curr. Microbiol., 31: 224-227.
    • (1995) Curr. Microbiol. , vol.31 , pp. 224-227
    • Breton, A.1    Gaillard-Martinie, B.2    Gerbi, C.3    de Segura, B.G.4    Durand, R.5    Kherratia, B.6
  • 7
    • 0033981963 scopus 로고    scopus 로고
    • Identification and characterization of anaerobic gut fungi using molecular methodologies based on ribosomal IT S1 and 18S rRNA
    • Brookman, J.L., G. Mennim, A.P.J. Trinci, M.K. Theodorou and D.S. Tuckwell, 2000. Identification and characterization of anaerobic gut fungi using molecular methodologies based on ribosomal IT S1 and 18S rRNA. Microbiology, 146: 393-403.
    • (2000) Microbiology , vol.146 , pp. 393-403
    • Brookman, J.L.1    Mennim, G.2    Trinci, A.P.J.3    Theodorou, M.K.4    Tuckwell, D.S.5
  • 8
    • 0013943938 scopus 로고
    • Medium without rumen fluid for non-selective enumeration and isolation of rumen bacteria
    • Caldwell, D.R. and M.P. Bryant, 1966. Medium without rumen fluid for non-selective enumeration and isolation of rumen bacteria. Applied Microbiol., 14: 794-801.
    • (1966) Applied Microbiol. , vol.14 , pp. 794-801
    • Caldwell, D.R.1    Bryant, M.P.2
  • 9
    • 33750557212 scopus 로고    scopus 로고
    • Isolation of extremely AT-rich genomic DNA and analysis of genes encoding carbohydrate-degrading enzymes from Orpinomyces sp. strain PC-2
    • Chen, H., S.L. Hopper, X. Li, L.G. Ljungdahl and C.E. Cerniglia, 2006. Isolation of extremely AT-rich genomic DNA and analysis of genes encoding carbohydrate-degrading enzymes from Orpinomyces sp. strain PC-2. Curr. Microbiol., 53: 396-400.
    • (2006) Curr. Microbiol. , vol.53 , pp. 396-400
    • Chen, H.1    Hopper, S.L.2    Li, X.3    Ljungdahl, L.G.4    Cerniglia, C.E.5
  • 10
    • 0029239777 scopus 로고
    • Purification and mode of action of a low molecular mass endo-1,4-b-D-glucanase from Fusarium oxysporum
    • Christakopoulos, P., D. Kekos, B.J. Macris, M. Claeyssens and M.K. Bhat, 1995. Purification and mode of action of a low molecular mass endo-1,4-b-D-glucanase from Fusarium oxysporum. J. Biotechnol., 39: 85-93.
    • (1995) J. Biotechnol. , vol.39 , pp. 85-93
    • Christakopoulos, P.1    Kekos, D.2    Macris, B.J.3    Claeyssens, M.4    Bhat, M.K.5
  • 11
    • 0000701177 scopus 로고
    • Phylogeny of anaerobic rumen Chytridiomycetes inferred from small subunit ribosomal RNA sequence comparison
    • Dore, J. and D.A. Stahl, 1991. Phylogeny of anaerobic rumen Chytridiomycetes inferred from small subunit ribosomal RNA sequence comparison. Can. J. Bot., 69: 1964-1971.
    • (1991) Can. J. Bot. , vol.69 , pp. 1964-1971
    • Dore, J.1    Stahl, D.A.2
  • 12
    • 0029971761 scopus 로고    scopus 로고
    • Glycoside and polysaccharide hydrolase activity of the rumen anaerobic fungus Caecomyces communis (Sphaeromoms communis sensu Orpin) at early and final stages of the developmental cycle
    • Gerbi, C., J. Bata, A. Breton and G. Premier, 1996. Glycoside and polysaccharide hydrolase activity of the rumen anaerobic fungus Caecomyces communis (Sphaeromoms communis sensu Orpin) at early and final stages of the developmental cycle. Curr. Microbiol., 32: 256-259.
    • (1996) Curr. Microbiol. , vol.32 , pp. 256-259
    • Gerbi, C.1    Bata, J.2    Breton, A.3    Premier, G.4
  • 13
    • 0033828355 scopus 로고    scopus 로고
    • Analysis of restriction fragment length polymorphisms in the ribosomal DNA of a selection of anaerobic chytrids
    • Hausner, G., G. Inglis, L.J. Yanke, L.M. Kawchuk and T.A. McAllister, 2000. Analysis of restriction fragment length polymorphisms in the ribosomal DNA of a selection of anaerobic chytrids. Can. J. Bot., 78: 917-927.
    • (2000) Can. J. Bot. , vol.78 , pp. 917-927
    • Hausner, G.1    Inglis, G.2    Yanke, L.J.3    Kawchuk, L.M.4    McAllister, T.A.5
  • 14
    • 0000591419 scopus 로고
    • Classification of anaerobic gut fungi from herbivores with emphasis on rumen fungi from Malaysia
    • Ho, Y.W. and D.J.S. Barr, 1995. Classification of anaerobic gut fungi from herbivores with emphasis on rumen fungi from Malaysia. Mycologia, 87: 655-677.
    • (1995) Mycologia , vol.87 , pp. 655-677
    • Ho, Y.W.1    Barr, D.J.S.2
  • 15
    • 0026085778 scopus 로고
    • Morphology of three polycentric rumen fungi and description of a procedure for the induction of zoosporogenesis and release of zoospores in cultures
    • Ho, Y.W. and T. Bauchop, 1991. Morphology of three polycentric rumen fungi and description of a procedure for the induction of zoosporogenesis and release of zoospores in cultures. J. Gen. Microbiol., 137: 213-217.
    • (1991) J. Gen. Microbiol. , vol.137 , pp. 213-217
    • Ho, Y.W.1    Bauchop, T.2
  • 16
    • 0028305723 scopus 로고
    • Isoenzyme analysis of anaerobic rumen fungi and relationship to aerobic chytrids
    • Ho, Y.W., I.Y. Khoo, S.G. Tan, N. Abdulah, S. Jalaludin and H. Kudo, 1994. Isoenzyme analysis of anaerobic rumen fungi and relationship to aerobic chytrids. Microbiology, 140: 1495-1504.
    • (1994) Microbiology , vol.140 , pp. 1495-1504
    • Ho, Y.W.1    Khoo, I.Y.2    Tan, S.G.3    Abdulah, N.4    Jalaludin, S.5    Kudo, H.6
  • 17
    • 6244229960 scopus 로고    scopus 로고
    • The diversity and taxonomy of anaerobic gut fungi
    • Ho, Y.W., N. Abdullah and S. Jalaludin, 2000. The diversity and taxonomy of anaerobic gut fungi. Fungal Diversity, 4: 37-51.
    • (2000) Fungal Diversity , vol.4 , pp. 37-51
    • Ho, Y.W.1    Abdullah, N.2    Jalaludin, S.3
  • 18
    • 0010486918 scopus 로고
    • Rumen Fungi in Domestic and Wild Herbivores
    • In: Wallace, R.J. and A. Lahlou-Kassi (Eds.). ILRI, Ethiopia
    • Kopecni, J., 1995. Rumen Fungi in Domestic and Wild Herbivores. In: Rumen Ecology Research Planning, Wallace, R.J. and A. Lahlou-Kassi (Eds.). ILRI, Ethiopia, pp: 103-120.
    • (1995) Rumen Ecology Research Planning , pp. 103-120
    • Kopecni, J.1
  • 19
    • 0000514578 scopus 로고
    • The phylogenetic relationships of the anaerobic chytridiomycetous gut fungi (Neocallimasticaceae) and the Chytridiomycota. I. Cladistic analysis of rRNA sequences
    • Li, J. and I.B. Heath, 1992. The phylogenetic relationships of the anaerobic chytridiomycetous gut fungi (Neocallimasticaceae) and the Chytridiomycota. I. Cladistic analysis of rRNA sequences. Can. J. Bot., 70: 1738-1746.
    • (1992) Can. J. Bot. , vol.70 , pp. 1738-1746
    • Li, J.1    Heath, I.B.2
  • 20
    • 0000244125 scopus 로고
    • The phylogenetic relationships of the anaerobic chytridiomycetous gut fungi (Neocallimasticaceae) and the Chytridiomycota. Cladistic analysis of structural data and description of Neocallimasticales ord. nov
    • Li, J., I.B. Heath and L. Packer, 1993. The phylogenetic relationships of the anaerobic chytridiomycetous gut fungi (Neocallimasticaceae) and the Chytridiomycota. Cladistic analysis of structural data and description of Neocallimasticales ord. nov. Can. J. Bot., 71: 393-407.
    • (1993) Can. J. Bot. , vol.71 , pp. 393-407
    • Li, J.1    Heath, I.B.2    Packer, L.3
  • 23
    • 0034871597 scopus 로고    scopus 로고
    • Cyllamyces aberensis gen. nov., sp. nov., a new anaerobic gut fungus with branched spomagiophores isolated from cattle
    • Ozkose, E., B.J. Thomas, D.R. Davies, G.W. Griffith and M.K. Theodorou, 2001. Cyllamyces aberensis gen. nov., sp. nov., a new anaerobic gut fungus with branched spomagiophores isolated from cattle. Can. J. Bot., 79: 666-673.
    • (2001) Can. J. Bot. , vol.79 , pp. 666-673
    • Ozkose, E.1    Thomas, B.J.2    Davies, D.R.3    Griffith, G.W.4    Theodorou, M.K.5
  • 24
    • 0037681641 scopus 로고    scopus 로고
    • Effect of phenolic monomers on growth and hydrolytic enzyme activities of an anaerobic fungus isolated from wild nilgai (Boselaphus tragocamelus)
    • Paul, S.S., D.N. Kamra, V.R.B. Sastry, N.P. Sahu and A. Kumar, 2003. Effect of phenolic monomers on growth and hydrolytic enzyme activities of an anaerobic fungus isolated from wild nilgai (Boselaphus tragocamelus). Lett. Applied Microbiol., 36: 377-381.
    • (2003) Lett. Applied Microbiol. , vol.36 , pp. 377-381
    • Paul, S.S.1    Kamra, D.N.2    Sastry, V.R.B.3    Sahu, N.P.4    Kumar, A.5
  • 25
    • 5644266339 scopus 로고    scopus 로고
    • Effect of anaerobic fungi on in vitro feed digestion by mixed rumen microflora of buffalo
    • Paul, S.S., D.N. Kamra, V.R.B. Sastry, N.P. Sahu and N. Agarwal, 2004. Effect of anaerobic fungi on in vitro feed digestion by mixed rumen microflora of buffalo. Reprod. Nutr. Dev., 44: 313-319.
    • (2004) Reprod. Nutr. Dev. , vol.44 , pp. 313-319
    • Paul, S.S.1    Kamra, D.N.2    Sastry, V.R.B.3    Sahu, N.P.4    Agarwal, N.5
  • 26
    • 0024692894 scopus 로고
    • Growth characteristics on cellobiose of three different anaerobic fungi isolated from the ovine rumen
    • Phillips M.W. and G.L.R. Gordon, 1989. Growth characteristics on cellobiose of three different anaerobic fungi isolated from the ovine rumen. Applied Environ. Microbiol., 55: 1695-1702.
    • (1989) Applied Environ. Microbiol. , vol.55 , pp. 1695-1702
    • Phillips, M.W.1    Gordon, G.L.R.2
  • 27
    • 0023754710 scopus 로고
    • Sugar and polysaccharide fermentation by rumen anaerobic fungi from Australia, Britain and New Zealand
    • Phillips, M.W. and G.L.R. Gordon, 1988. Sugar and polysaccharide fermentation by rumen anaerobic fungi from Australia, Britain and New Zealand. Biosystems, 21: 377-383.
    • (1988) Biosystems , vol.21 , pp. 377-383
    • Phillips, M.W.1    Gordon, G.L.R.2
  • 28
    • 2742548022 scopus 로고
    • Unusual Rumen Fungi Isolated from Northern Australian Cattle and Water Buffalo
    • In: Nolan, J.V., R.A. Leng and D.I. Demeyer (Eds.). Penambul Books, Armidale, Australia
    • Phillips, M.W., 1989. Unusual Rumen Fungi Isolated from Northern Australian Cattle and Water Buffalo. In: The Roles of Protozoa and Fungi in Ruminant Digestion, Nolan, J.V., R.A. Leng and D.I. Demeyer (Eds.). Penambul Books, Armidale, Australia pp: 247-249.
    • (1989) The Roles of Protozoa and Fungi in Ruminant Digestion , pp. 247-249
    • Phillips, M.W.1
  • 29
    • 0003035453 scopus 로고
    • Mechanisms of Enzymic Hydrolysis of Hemicelluloses (Xylans) and Procedures for Determinationof the Enzymic Activities Involved
    • In: Coughlan, M.P. (Ed.). Elsevier Applied Science, London
    • Puls, J. and K. Poutanen, 1989. Mechanisms of Enzymic Hydrolysis of Hemicelluloses (Xylans) and Procedures for Determinationof the Enzymic Activities Involved. In: Enzyme System for Lignocellulose Degradation, Coughlan, M.P. (Ed.). Elsevier Applied Science, London, pp: 151-165.
    • (1989) Enzyme System for Lignocellulose Degradation , pp. 151-165
    • Puls, J.1    Poutanen, K.2
  • 30
    • 0035489392 scopus 로고    scopus 로고
    • Characterization of bacterial and fungal soil communities by automated ribosomal intergenic spacer analysis fingerprints: Biological and methodological variability
    • Ranjard, L., F. Poly, J.C. Lath, C. Mougel, J. Thioulouse and S. Nazaret, 2001. Characterization of bacterial and fungal soil communities by automated ribosomal intergenic spacer analysis fingerprints: Biological and methodological variability. Applied Environ. Microbiol., 67: 4479-4487.
    • (2001) Applied Environ. Microbiol. , vol.67 , pp. 4479-4487
    • Ranjard, L.1    Poly, F.2    Lath, J.C.3    Mougel, C.4    Thioulouse, J.5    Nazaret, S.6
  • 32
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0
    • Tamura, K., J. Dudley, M. Nei and S. Kumar, 2007. MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol., 24: 1596-1599.
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 33
    • 0030276962 scopus 로고    scopus 로고
    • Anaerobic fungi in the digestive tract of mammalian herbivores and their potential for exploitation
    • Theodorou, M.K., G. Mennim, D. Davies, W.Y. Zhu, A.P.J. Trinci and J. Brookman, 1996. Anaerobic fungi in the digestive tract of mammalian herbivores and their potential for exploitation. Proc. Nun Soc., 55: 913-926.
    • (1996) Proc. Nun Soc. , vol.55 , pp. 913-926
    • Theodorou, M.K.1    Mennim, G.2    Davies, D.3    Zhu, W.Y.4    Trinci, A.P.J.5    Brookman, J.6
  • 34
    • 0031574072 scopus 로고    scopus 로고
    • The Clustal X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson, J.D., T.J. Gibson, F. Plewniak, F. Jeanmougin and D.G. Higgins, 1997. The Clustal X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res., 24: 4876-4882.
    • (1997) Nucleic Acids Res. , vol.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 36
    • 19044384156 scopus 로고    scopus 로고
    • The rapid assignment of ruminal fungi to presumptive genera using ITS1 and ITS2 RNA secondary structures to produce group-specific fingerprints
    • Tuckwell, D.S., M.J. Nicholson, C.S. McSweeney, M.K. Theodorou and J.L. Brookman, 2005. The rapid assignment of ruminal fungi to presumptive genera using ITS1 and ITS2 RNA secondary structures to produce group-specific fingerprints. Microbiology, 151: 1557-1567.
    • (2005) Microbiology , vol.151 , pp. 1557-1567
    • Tuckwell, D.S.1    Nicholson, M.J.2    McSweeney, C.S.3    Theodorou, M.K.4    Brookman, J.L.5
  • 37
    • 0033824163 scopus 로고    scopus 로고
    • Direct analysis of wood-inhabiting fungi using denaturing gradient gel electrophoresis of amplified ribosomal DNA
    • Vainio, E.J. and J. Hantula, 2000. Direct analysis of wood-inhabiting fungi using denaturing gradient gel electrophoresis of amplified ribosomal DNA. Mycol. Res., 104: 927-936.
    • (2000) Mycol. Res. , vol.104 , pp. 927-936
    • Vainio, E.J.1    Hantula, J.2
  • 38
    • 0025366456 scopus 로고
    • 1 6S ribosomal-RNA sequences reveal numerous uncultured microorganisms in a natural community
    • Ward, D.M., R. Weller and M.M. Bateson, 1990. 16S ribosomal-RNA sequences reveal numerous uncultured microorganisms in a natural community. Nature, 345: 63-65.
    • (1990) Nature , vol.345 , pp. 63-65
    • Ward, D.M.1    Weller, R.2    Bateson, M.M.3
  • 39
    • 0038611508 scopus 로고
    • Hydrolysis with a-amylase
    • Whealan, W.J., 1969. Hydrolysis with a-amylase. Meth. Carbohydr. Chem., 4: 252-260.
    • (1969) Meth. Carbohydr. Chem. , vol.4 , pp. 252-260
    • Whealan, W.J.1
  • 40
    • 0028334637 scopus 로고
    • Effect of the carbohydrate growth substrate on polysaccharolytic enzyme formation by anaerobic fungi isolated from the foregut and hindgut of nonruminant herbivores and the forestomach of ruminants
    • Williams, A.G., S.E. Withers and C.G. Orpin, 1994. Effect of the carbohydrate growth substrate on polysaccharolytic enzyme formation by anaerobic fungi isolated from the foregut and hindgut of nonruminant herbivores and the forestomach of ruminants. Left. Applied Microbiol., 18: 147-151.
    • (1994) Left. Applied Microbiol. , vol.18 , pp. 147-151
    • Williams, A.G.1    Withers, S.E.2    Orpin, C.G.3
  • 41
    • 0030497483 scopus 로고    scopus 로고
    • Comparison of the influence of carbon substrates on the fibrolytic activities of anaerobic rumen fungi
    • Yanke, L.J., L.B. Selinger, J.R. Lynn and K.J. Cheng, 1996. Comparison of the influence of carbon substrates on the fibrolytic activities of anaerobic rumen fungi. Anaerobe, 2: 373-378.
    • (1996) Anaerobe , vol.2 , pp. 373-378
    • Yanke, L.J.1    Selinger, L.B.2    Lynn, J.R.3    Cheng, K.J.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.