Molecular characterization of Tomato leaf curl China virus, infecting tomato plants in China, and functional analyses of its associated betasatellite

Applied and Environmental Microbiology

Volumn 77, Issue 9, 2011, Pages 3092-3101

  Yang, Xiuling ^a   Guo, Wei ^a   Ma, Xinying ^a   An, Qianli ^a   Zhou, Xueping ^a  

^a ZHEJIANG UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

DELETION MUTAGENESIS; GENOMIC SEQUENCE; GLUTINOSA; GUANGXI; LEAF CURL DISEASE; MOLECULAR CHARACTERIZATION; NICOTIANA BENTHAMIANA; NUCLEAR LOCALIZATION; NUCLEOTIDE SEQUENCES; PETUNIA HYBRIDA; RECOMBINATION ANALYSIS; RNA SILENCING; SOLANUM LYCOPERSICUM; TOMATO LEAF; TOMATO PLANTS; VIET NAM;

AMINO ACIDS; FRUITS; RNA; VIRUSES;

PLANTS (BOTANY);

SATELLITE DNA; VIRUS DNA; VIRUS PROTEIN;

AMINO ACID; DICOTYLEDON; GENOME; MOLECULAR ANALYSIS; PHYLOGENETICS; RECOMBINATION; VIRUS;

ARTICLE; BEGOMOVIRUS; CHEMISTRY; CHINA; CLASSIFICATION; DNA SEQUENCE; GENETIC RECOMBINATION; GENETICS; ISOLATION AND PURIFICATION; METABOLISM; MOLECULAR EVOLUTION; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; PLANT DISEASE; TOMATO; VIROLOGY;

BEGOMOVIRUS; CHINA; DNA, SATELLITE; DNA, VIRAL; EVOLUTION, MOLECULAR; LYCOPERSICON ESCULENTUM; MOLECULAR SEQUENCE DATA; PHYLOGENY; PLANT DISEASES; RECOMBINATION, GENETIC; SEQUENCE ANALYSIS, DNA; VIRAL PROTEINS;

CHINA; GUANGXI ZHUANGZU;

BEGOMOVIRUS; LYCOPERSICON ESCULENTUM; NICOTIANA BENTHAMIANA; NICOTIANA GLUTINOSA; PETUNIA X HYBRIDA; TOMATO LEAF CURL CHINA VIRUS; TOMATO LEAF CURL GUJARAT VIRUS; TOMATO LEAF CURL VIETNAM VIRUS;

EID: 79955608585     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.00017-11     Document Type: Article

References (42)

1. Briddon, R. W., et al. 2008. Recommendations for the classification and nomenclature of the DNAβ satellites of begomoviruses. Arch. Virol. 153:763-781.
2. Briddon, R. W., S. E. Bull, S. Mansoor, I. Amin, and P. G. Markham. 2002. Universal primers for the PCR-mediated amplification of DNAβ: a molecule associated with some monopartite begomoviruses. Mol. Biotechnol. 20:315-318.
3. Briddon, R. W., et al. 2001. Identification of DNA components required for induction of cotton leaf curl disease. Virology 285:234-243.
4. Brigneti, G., et al. 1998. Viral pathogenicity determinants are suppressors of transgene silencing in Nicotiana benthamiana. EMBO J. 17:6739-6746.
5. Cai, X. Z., X. Zhou, Y. P. Xu, M. H. Joosten, and P. J. de Wit. 2007. Cladosporium fulvum CfHNNI1 induces hypersensitive necrosis, defence gene expression and disease resistance in both host and nonhost plants. Plant Mol. Biol. 64:89-101.
6. Chapman, E. J., A. I. Prokhnevsky, K. Gopinath, V. V. Dolja, and J. C. Carrington. 2004. Viral RNA silencing suppressors inhibit the microRNA pathway at an intermediate step. Genes Dev. 18:1179-1186.
7. Chen, J., W. X. Li, D. Xie, J. R. Peng, and S. W. Ding. 2004. Viral virulence protein suppresses RNA silencing-mediated defense but upregulates the role of microRNA in host gene expression. Plant Cell 16:1302-1313.
8. Cui, X., G. Li, D. Wang, D. Hu, and X. Zhou. 2005. A begomovirus DNAβ-encoded protein binds DNA, functions as a suppressor of RNA silencing, and targets the cell nucleus. J. Virol. 79:10764-10775.
9. Cui, X., X. Tao, Y. Xie, C. M. Fauquet, and X. Zhou. 2004. A DNAβ associated with Tomato yellow leaf curl China virus is required for symptom induction. J. Virol. 78:13966-13974.
10. Fauquet, C. M., and J. Stanley. 2005. Revising the way we conceive and name viruses below the species level: a review of geminivirus taxonomy calls for new standardized isolate descriptors. Arch. Virol. 150:2151-2179.
11. Gorlich, D., and I. W. Mattaj. 1996. Nucleocytoplasmic transport. Science 271:1513-1518.
12. Guo, W., T. Jiang, X. Zhang, G. Li, and X. Zhou. 2008. Molecular variation of satellite DNAβ molecules associated with Malvastrum yellow vein virus and their role in pathogenicity. Appl. Environ. Microbiol. 74:1909-1913.
13. Jose, J., and R. Usha. 2003. Bhendi yellow vein mosaic disease in India is caused by association of a DNAβ satellite with a begomovirus. Virology 305:310-317.
14. Kasschau, K. D., and J. C. Carrington. 1998. A counterdefensive strategy of plant viruses: suppression of posttranscriptional gene silencing. Cell 95:461-470.
15. Kon, T., P. Sharma, and M. Ikegami. 2007. Suppressor of RNA silencing encoded by the monopartite tomato leaf curl Java begomovirus. Arch. Virol. 152:1273-1282.
16. Kumar, S., K. Tamura, and M. Nei. 2004. MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief. Bioinformatics 5:150-163.
17. Kunik, T., L. Mizrachy, V. Citovsky, and Y. Gafni. 1999. Characterization of a tomato karyopherin alpha that interacts with the tomato yellow leaf curl virus (TYLCV) capsid protein. J. Exp. Bot. 50:731-732.
18. Laufs, J., et al. 1995. In vitro cleavage and joining at the viral origin of replication by the replication initiator protein of tomato yellow leaf curl virus. Proc. Natl. Acad. Sci. U. S. A. 92:3879-3883.
19. Lefeuvre, P., J. M. Lett, B. Reynaud, and D. P. Martin. 2007. Avoidance of protein fold disruption in natural virus recombinants. PLoS Pathog. 3:e181.
20. Li, Z. H., X. P. Zhou, X. Zhang, and Y. Xie. 2004. Molecular characterization of tomato-infecting begomoviruses in Yunnan, China. Arch. Virol. 149:1721-1732.
21. Ma, X. Y., J. H. Cai, G. X. Li, B. X. Qin, and X. P. Zhou. 2004. Molecular characterization of a distinct begomovirus infecting Euphorbia pulcherrima in China. J. Phytopathol. 152:215-218.
22. Mansoor, S., Y. Zafar, and R. W. Briddon. 2006. Geminivirus disease complexes: the threat is spreading. Trends Plant Sci. 11:209-212.
23. Martin, D. P., C. Williamson, and D. Posada. 2005. RDP2: recombination detection and analysis from sequence alignments. Bioinformatics 21:260-262.
24. Nakai, K., and P. Horton. 1999. PSORT: a program for detecting sorting signals in proteins and predicting their subcellular localization. Trends Biochem. Sci. 24:34-36.
25. Padidam, M., S. Sawyer, and C. M. Fauquet. 1999. Possible emergence of new geminiviruses by frequent recombination. Virology 265:218-225.
26. Rost, B., G. Yachdav, and J. Liu. 2004. The PredictProtein server. Nucleic Acids Res. 32:W321-W326.
27. Saeed, M., et al. 2005. A single complementary-sense transcript of a geminiviral DNAβ satellite is determinant of pathogenicity. Mol. Plant Microbe Interact. 18:7-14.
28. Saunders, K., et al. 2000. A unique virus complex causes Ageratum yellow vein disease. Proc. Natl. Acad. Sci. U. S. A. 97:6890-6895.
29. Saunders, K., I. D. Bedford, T. Yahara, and J. Stanley. 2003. Aetiology: the earliest recorded plant virus disease. Nature 422:831.
30. Seal, S. E., F. vandenBosch, and M. J. Jeger. 2006. Factors influencing begomovirus evolution and their increasing global significance: implications for sustainable control. Crit. Rev. Plant Sci. 25:23-46.
31. Suntharalingam, M., and S. R. Wente. 2003. Peering through the pore: nuclear pore complex structure, assembly, and function. Dev. Cell 4:775-789.
32. Tao, X. R., X. P. Zhou, G. X. Li, and J. L. Yu. 2002. The pathogenicity on legumes of Cucumber mosaic virus was determined by 243 nucleotides on 2a polymerase gene of viral RNA2. Chin. Sci. Bull. 47:748-750.
33. Thompson, J. D., T. J. Gibson, F. Plewniak, F. Jeanmougin, and D. G. Higgins. 1997. The CLUSTAL_X Windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25:4876-4882.
34. van Engelen, F. A., et al. 1995. pBINPLUS: an improved plant transformation vector based on pBIN19. Transgenic Res. 4:288-290.
35. Wang, Y., et al. 2004. Functional analysis of the Cucumber mosaic virus 2b protein: pathogenicity and nuclear localization. J. Gen. Virol. 85:3135-3147.
36. Xie, Y., and X. P. Zhou. 2003. Molecular characterization of squash leaf curl Yunnan virus, a new begomovirus and evidence for recombination. Arch. Virol. 148:2047-2054.
37. Xie, Y., X. P. Zhou, Z. K. Zhang, and Y. J. Qi. 2002. Tobacco curly shoot virus isolated in Yunnan is a distinct species of Begomovirus. Chin. Sci. Bull. 47:197-200.
38. Xiong, R., J. Wu, Y. Zhou, and X. Zhou. 2009. Characterization and subcellular localization of an RNA silencing suppressor encoded by Rice stripe tenuivirus. Virology 387:29-40.
39. Zhang, X., et al. 2006. Cucumber mosaic virus-encoded 2b suppressor inhibits Arabidopsis Argonaute1 cleavage activity to counter plant defense. Genes Dev. 20:3255-3268.
40. Zhou, X., et al. 1997. Evidence that DNA-A of a geminivirus associated with severe cassava mosaic disease in Uganda has arisen by interspecific recombination. J. Gen. Virol. 78:2101-2111.
41. Zhou, X. P., et al. 2003. Characterization of DNAβ associated with begomoviruses in China and evidence for co-evolution with their cognate viral DNA-A. J. Gen. Virol. 84:237-247.
42. Zhou, X. P., Y. Xie, and Z. K. Zhang. 2001. Molecular characterization of a distinct begomovirus infecting tobacco in Yunnan, China. Arch. Virol. 146: 1599-1606.