메뉴 건너뛰기




Volumn 193, Issue 9, 2011, Pages 2236-2241

DEAD-box proteins from Escherichia coli exhibit multiple ATP-independent activities

Author keywords

[No Author keywords available]

Indexed keywords

DEAD BOX PROTEIN; RNA HELICASE; SMALL CYTOPLASMIC RNA;

EID: 79955548120     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.01488-10     Document Type: Article
Times cited : (18)

References (37)
  • 1
    • 0032731196 scopus 로고    scopus 로고
    • Twelve species of the nucleoid-associated protein from Escherichia coli Sequence recognition specificity and DNA binding affinity
    • Azam, T. A., and A. Ishihama. 1999. Twelve species of the nucleoid-associated protein from Escherichia coli. Sequence recognition specificity and DNA binding affinity. J. Biol. Chem. 274:33105-33113.
    • (1999) J. Biol. Chem. , vol.274 , pp. 33105-33113
    • Azam, T.A.1    Ishihama, A.2
  • 2
    • 2942754127 scopus 로고    scopus 로고
    • Studies on three E. coli DEAD-box helicases point to an unwinding mechanism different from that of model DNA helicases
    • Bizebard, T., I. Ferlenghi, I. Iost, and M. Dreyfus. 2004. Studies on three E. coli DEAD-box helicases point to an unwinding mechanism different from that of model DNA helicases. Biochemistry 43:7857-7866.
    • (2004) Biochemistry , vol.43 , pp. 7857-7866
    • Bizebard, T.1    Ferlenghi, I.2    Iost, I.3    Dreyfus, M.4
  • 3
    • 34247109118 scopus 로고    scopus 로고
    • Hfq structure, function and ligand binding
    • Brennan, R. G., and T. M. Link. 2007. Hfq structure, function and ligand binding. Curr. Opin. Microbiol. 10:125-133.
    • (2007) Curr. Opin. Microbiol. , vol.10 , pp. 125-133
    • Brennan, R.G.1    Link, T.M.2
  • 4
    • 0028269435 scopus 로고
    • Co-purification of E. coli RNase E and PNPase: evidence for a specific association between two enzymes important in RNA processing and degradation
    • Carpousis, A. J., G. Van Houwe, C. Ehretsmann, and H. M. Krisch. 1994. Co-purification of E. coli RNase E and PNPase: evidence for a specific association between two enzymes important in RNA processing and degradation. Cell 76:889-900.
    • (1994) Cell , vol.76 , pp. 889-900
    • Carpousis, A.J.1    Van Houwe, G.2    Ehretsmann, C.3    Krisch, H.M.4
  • 6
    • 2542557396 scopus 로고    scopus 로고
    • CsdA, a cold-shock RNA helicase from Escherichia coli, is involved in the biogenesis of 50S ribosomal subunit
    • Charollais, J., M. Dreyfus, and I. Iost. 2004. CsdA, a cold-shock RNA helicase from Escherichia coli, is involved in the biogenesis of 50S ribosomal subunit. Nucleic Acids Res. 32:2751-2759.
    • (2004) Nucleic Acids Res , vol.32 , pp. 2751-2759
    • Charollais, J.1    Dreyfus, M.2    Iost, I.3
  • 7
    • 0038120874 scopus 로고    scopus 로고
    • The DEAD-box RNA helicase SrmB is involved in the assembly of 50S ribosomal subunits in Escherichia coli
    • Charollais, J., D. Pflieger, J. Vinh, M. Dreyfus, and I. Iost. 2003. The DEAD-box RNA helicase SrmB is involved in the assembly of 50S ribosomal subunits in Escherichia coli. Mol. Microbiol. 48:1253-1265.
    • (2003) Mol. Microbiol. , vol.48 , pp. 1253-1265
    • Charollais, J.1    Pflieger, D.2    Vinh, J.3    Dreyfus, M.4    Iost, I.5
  • 8
    • 33344473656 scopus 로고    scopus 로고
    • The DEADbox protein family of RNA helicases
    • Cordin, O., J. Banroques, N. K. Tanner, and P. Linder. 2006. The DEADbox protein family of RNA helicases. Gene 367:17-37.
    • (2006) Gene , vol.367 , pp. 17-37
    • Cordin, O.1    Banroques, J.2    Tanner, N.K.3    Linder, P.4
  • 9
    • 64049095465 scopus 로고    scopus 로고
    • Maturation and degradation of ribosomal RNA in bacteria
    • Deutscher, M. P. 2009. Maturation and degradation of ribosomal RNA in bacteria. Prog. Mol. Biol. Transl. Sci. 85:369-391.
    • (2009) Prog. Mol. Biol. Transl. Sci. , vol.85 , pp. 369-391
    • Deutscher, M.P.1
  • 10
    • 0035476705 scopus 로고    scopus 로고
    • Escherichia coli DbpA is an RNA helicase that requires hairpin 92 of 23S rRNA
    • Diges, C. M., and O. C. Uhlenbeck. 2001. Escherichia coli DbpA is an RNA helicase that requires hairpin 92 of 23S rRNA. EMBO J. 20:5503-5512.
    • (2001) EMBO J , vol.20 , pp. 5503-5512
    • Diges, C.M.1    Uhlenbeck, O.C.2
  • 11
    • 0025238781 scopus 로고
    • Deletion-tolerance and trans-splicing of the bacteriophage T4 td intron Analysis of the P6-L6a region
    • Galloway Salvo, J. L., T. Coetzee, and M. Belfort. 1990. Deletion-tolerance and trans-splicing of the bacteriophage T4 td intron. Analysis of the P6-L6a region. J. Mol. Biol. 211:537-549.
    • (1990) J. Mol. Biol. , vol.211 , pp. 537-549
    • Galloway Salvo, J.L.1    Coetzee, T.2    Belfort, M.3
  • 12
    • 0024344173 scopus 로고
    • Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes
    • Gorbalenya, A. E., E. V. Koonin, A. P. Donchenko, and V. M. Blinov. 1989. Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res. 17:4713-4730.
    • (1989) Nucleic Acids Res , vol.17 , pp. 4713-4730
    • Gorbalenya, A.E.1    Koonin, E.V.2    Donchenko, A.P.3    Blinov, V.M.4
  • 13
    • 77149138644 scopus 로고    scopus 로고
    • The regulatory protein RraA modulates RNA binding and helicase activities of the E. coli degradosome
    • Gorna, F., et al. 2010. The regulatory protein RraA modulates RNA binding and helicase activities of the E. coli degradosome. RNA 16:553-562.
    • (2010) RNA , vol.16 , pp. 553-562
    • Gorna, F.1
  • 14
    • 77951920692 scopus 로고    scopus 로고
    • DEAD-box helicases: posttranslational regulation and function
    • Gustafson, E. A., and G. M. Wessel. 2010. DEAD-box helicases: posttranslational regulation and function. Biochem. Biophys. Res. Commun. 395:1-6.
    • (2010) Biochem. Biophys. Res. Commun. , vol.395 , pp. 1-6
    • Gustafson, E.A.1    Wessel, G.M.2
  • 15
    • 33845738802 scopus 로고    scopus 로고
    • Involvement of DEAD-box proteins in group I and group II intron splicing. Biochemical characterization of Mss116p, ATP hydrolysis-dependent and -independent mechanisms, and general RNA chaperone activity
    • Halls, C., et al. 2007. Involvement of DEAD-box proteins in group I and group II intron splicing. Biochemical characterization of Mss116p, ATP hydrolysis-dependent and -independent mechanisms, and general RNA chaperone activity. J. Mol. Biol. 365:835-855.
    • (2007) J. Mol. Biol. , vol.365 , pp. 835-855
    • Halls, C.1
  • 16
    • 77749239820 scopus 로고    scopus 로고
    • Pathway of ATP utilization and duplex RNA unwinding by the DEAD-box helicase
    • Henn, A., et al. 2010. Pathway of ATP utilization and duplex RNA unwinding by the DEAD-box helicase, DbpA. Proc. Natl. Acad. Sci. U. S. A. 107:4046-4050.
    • (2010) DbpA. Proc. Natl. Acad. Sci. U. S. A. , vol.107 , pp. 4046-4050
    • Henn, A.1
  • 17
    • 33749125440 scopus 로고    scopus 로고
    • DEAD-box RNA helicases in Escherichia coli
    • Iost, I., and M. Dreyfus. 2006. DEAD-box RNA helicases in Escherichia coli. Nucleic Acids Res. 34:4189-4197.
    • (2006) Nucleic Acids Res , vol.34 , pp. 4189-4197
    • Iost, I.1    Dreyfus, M.2
  • 18
    • 77953628314 scopus 로고    scopus 로고
    • Functional and molecular analysis of Escherichia coli strains lacking multiple DEAD-box helicases
    • Jagessar, K. L., and C. Jain. 2010. Functional and molecular analysis of Escherichia coli strains lacking multiple DEAD-box helicases. RNA 16: 1886-1892.
    • (2010) RNA , vol.16 , pp. 1886-1892
    • Jagessar, K.L.1    Jain, C.2
  • 19
    • 38649135052 scopus 로고    scopus 로고
    • The E. coli RhlE RNA helicase regulates the function of related RNA helicases during ribosome assembly
    • Jain, C. 2008. The E. coli RhlE RNA helicase regulates the function of related RNA helicases during ribosome assembly. RNA 14:381-389.
    • (2008) RNA , vol.14 , pp. 381-389
    • Jain, C.1
  • 20
    • 33645391296 scopus 로고    scopus 로고
    • Overexpression and purification of tagged Escherichia coli proteins using a chromosomal knock-in strategy
    • Jain, C. 2006. Overexpression and purification of tagged Escherichia coli proteins using a chromosomal knock-in strategy. Protein Expr. Purif. 46:294-298.
    • (2006) Protein Expr. Purif. , vol.46 , pp. 294-298
    • Jain, C.1
  • 21
  • 22
    • 0030043216 scopus 로고    scopus 로고
    • Cold shock induces a major ribosomal-associated protein that unwinds double-stranded RNA in Escherichia coli
    • Jones, P. G., M. Mitta, Y. Kim, W. Jiang, and M. Inouye. 1996. Cold shock induces a major ribosomal-associated protein that unwinds double-stranded RNA in Escherichia coli. Proc. Natl. Acad. Sci. U. S. A. 93:76-80.
    • (1996) Proc. Natl. Acad. Sci. U. S. A. , vol.93 , pp. 76-80
    • Jones, P.G.1    Mitta, M.2    Kim, Y.3    Jiang, W.4    Inouye, M.5
  • 23
    • 0028107450 scopus 로고
    • Regulation of the Escherichia coli hfq gene encoding the host factor for phage Q beta
    • Kajitani, M., A. Kato, A. Wada, Y. Inokuchi, and A. Ishihama. 1994. Regulation of the Escherichia coli hfq gene encoding the host factor for phage Q beta. J. Bacteriol. 176:531-534.
    • (1994) J. Bacteriol. , vol.176 , pp. 531-534
    • Kajitani, M.1    Kato, A.2    Wada, A.3    Inokuchi, Y.4    Ishihama, A.5
  • 24
    • 0025943266 scopus 로고
    • rhlB, a new Escherichia coli K-12 gene with an RNA helicase-like protein sequence motif, one of at least five such possible genes in a prokaryote
    • Kalman, M., H. Murphy, and M. Cashel. 1991. rhlB, a new Escherichia coli K-12 gene with an RNA helicase-like protein sequence motif, one of at least five such possible genes in a prokaryote. New Biol. 3:886-895.
    • (1991) New Biol , vol.3 , pp. 886-895
    • Kalman, M.1    Murphy, H.2    Cashel, M.3
  • 25
    • 33646568438 scopus 로고    scopus 로고
    • Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research
    • Kitagawa, M., et al. 2005. Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12:291-299.
    • (2005) DNA Res , vol.12 , pp. 291-299
    • Kitagawa, M.1
  • 26
    • 33749139723 scopus 로고    scopus 로고
    • Dead-box proteins: a family affair-active and passive players in RNP-remodeling
    • Linder, P. 2006. Dead-box proteins: a family affair-active and passive players in RNP-remodeling. Nucleic Acids Res. 34:4168-4180.
    • (2006) Nucleic Acids Res , vol.34 , pp. 4168-4180
    • Linder, P.1
  • 27
    • 0037367939 scopus 로고    scopus 로고
    • RNA chaperone activity of the Sm-like Hfq protein
    • Moll, I., D. Leitsch, T. Steinhauser, and U. Blasi. 2003. RNA chaperone activity of the Sm-like Hfq protein. EMBO Rep. 4:284-289.
    • (2003) EMBO Rep , vol.4 , pp. 284-289
    • Moll, I.1    Leitsch, D.2    Steinhauser, T.3    Blasi, U.4
  • 28
    • 0002782867 scopus 로고    scopus 로고
    • Hfq: a bacterial Sm-like protein that mediates RNARNA interaction
    • Moller, T., et al. 2002. Hfq: a bacterial Sm-like protein that mediates RNARNA interaction. Mol. Cell 9:23-30.
    • (2002) Mol. Cell , vol.9 , pp. 23-30
    • Moller, T.1
  • 29
    • 9644284618 scopus 로고    scopus 로고
    • Physical and functional interactions among RNase E, polynucleotide phosphorylase and the cold-shock protein
    • Prud'homme-Genereux, A., et al. 2004. Physical and functional interactions among RNase E, polynucleotide phosphorylase and the cold-shock protein, CsdA: evidence for a 'cold shock degradosome.' Mol. Microbiol. 54:1409-1421.
    • (2004) CsdA: evidence for a 'cold shock degradosome. ' Mol. Microbiol. , vol.54 , pp. 1409-1421
    • Prud'homme-Genereux, A.1
  • 30
    • 0029922992 scopus 로고    scopus 로고
    • A DEAD-box RNA helicase in the Escherichia coli RNA degradosome
    • Py, B., C. F. Higgins, H. M. Krisch, and A. J. Carpousis. 1996. A DEAD-box RNA helicase in the Escherichia coli RNA degradosome. Nature 381:169-172.
    • (1996) Nature , vol.381 , pp. 169-172
    • Py, B.1    Higgins, C.F.2    Krisch, H.M.3    Carpousis, A.J.4
  • 31
    • 39049131090 scopus 로고    scopus 로고
    • RNA chaperones RNA annealers and RNA helicases
    • Rajkowitsch, L., et al. 2007. RNA chaperones, RNA annealers and RNA helicases. RNA Biol. 4:118-130.
    • (2007) RNA Biol , vol.4 , pp. 118-130
    • Rajkowitsch, L.1
  • 32
    • 36249019206 scopus 로고    scopus 로고
    • Dissecting RNA chaperone activity
    • Rajkowitsch, L., and R. Schroeder. 2007. Dissecting RNA chaperone activity. RNA 13:2053-2060.
    • (2007) RNA , vol.13 , pp. 2053-2060
    • Rajkowitsch, L.1    Schroeder, R.2
  • 33
    • 1542344429 scopus 로고    scopus 로고
    • DEAD-box proteins: the driving forces behind RNA metabolism
    • Rocak, S., and P. Linder. 2004. DEAD-box proteins: the driving forces behind RNA metabolism. Nat. Rev. Mol. Cell Biol. 5:232-241.
    • (2004) Nat. Rev. Mol. Cell Biol. , vol.5 , pp. 232-241
    • Rocak, S.1    Linder, P.2
  • 34
    • 2542510120 scopus 로고    scopus 로고
    • Rearrangement of structured RNA via branch migration structures catalysed by the highly related DEADbox proteins p68 and p72
    • Rossler, O. G., A. Straka, and H. Stahl. 2001. Rearrangement of structured RNA via branch migration structures catalysed by the highly related DEADbox proteins p68 and p72. Nucleic Acids Res. 29:2088-2096.
    • (2001) Nucleic Acids Res , vol.29 , pp. 2088-2096
    • Rossler, O.G.1    Straka, A.2    Stahl, H.3
  • 35
    • 9344260242 scopus 로고    scopus 로고
    • RNA chaperone activity of large ribosomal subunit proteins from Escherichia coli
    • Semrad, K., R. Green, and R. Schroeder. 2004. RNA chaperone activity of large ribosomal subunit proteins from Escherichia coli. RNA 10:1855-1860.
    • (2004) RNA , vol.10 , pp. 1855-1860
    • Semrad, K.1    Green, R.2    Schroeder, R.3
  • 36
    • 31644440766 scopus 로고    scopus 로고
    • Ddx42p-a human DEAD box protein with RNA chaperone activities
    • Uhlmann-Schiffler, H., C. Jalal, and H. Stahl. 2006. Ddx42p-a human DEAD box protein with RNA chaperone activities. Nucleic Acids Res. 34:10-22.
    • (2006) Nucleic Acids Res , vol.34 , pp. 10-22
    • Uhlmann-Schiffler, H.1    Jalal, C.2    Stahl, H.3
  • 37
    • 26644450709 scopus 로고    scopus 로고
    • ATP- and ADP-dependent modulation of RNA unwinding and strand annealing activities by the DEAD-box protein DED1
    • Yang, Q., and E. Jankowsky. 2005. ATP- and ADP-dependent modulation of RNA unwinding and strand annealing activities by the DEAD-box protein DED1. Biochemistry 44:13591-13601.
    • (2005) Biochemistry , vol.44 , pp. 13591-13601
    • Yang, Q.1    Jankowsky, E.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.