-
2
-
-
57849114751
-
Independent transcription of miR-281 in the intron of ODA in Drosophila melanogaster
-
Xiong H., Qian J., He T., Li F. Independent transcription of miR-281 in the intron of ODA in Drosophila melanogaster. Biochem. Biophys. Res. Commun. 2009, 378:883-889.
-
(2009)
Biochem. Biophys. Res. Commun.
, vol.378
, pp. 883-889
-
-
Xiong, H.1
Qian, J.2
He, T.3
Li, F.4
-
3
-
-
6344281172
-
Identification of mammalian microRNA host genes and transcription units
-
Rodriguez A., Griffiths-Jones S., Ashurst J.L., Bradley A. Identification of mammalian microRNA host genes and transcription units. Genome Res. 2004, 14:1902-1910.
-
(2004)
Genome Res.
, vol.14
, pp. 1902-1910
-
-
Rodriguez, A.1
Griffiths-Jones, S.2
Ashurst, J.L.3
Bradley, A.4
-
4
-
-
34447097693
-
Intronic microRNA precursors that bypass Drosha processing
-
Ruby J.G., Jan C.H., Bartel D.P. Intronic microRNA precursors that bypass Drosha processing. Nature 2007, 448:83-86.
-
(2007)
Nature
, vol.448
, pp. 83-86
-
-
Ruby, J.G.1
Jan, C.H.2
Bartel, D.P.3
-
5
-
-
34547130543
-
MicroRNA: introducing the mirtron
-
Goymer P. MicroRNA: introducing the mirtron. Nat. Rev. Mol. Cell Biol. 2007, 8:597.
-
(2007)
Nat. Rev. Mol. Cell Biol.
, vol.8
, pp. 597
-
-
Goymer, P.1
-
6
-
-
34447107760
-
The mirtron pathway generates microRNA-Class regulatory RNAs in Drosophila
-
Okamura K., Hagen J.W., Duan H., Tyler D.M., Lai E.C. The mirtron pathway generates microRNA-Class regulatory RNAs in Drosophila. Cell 2007, 130:89-100.
-
(2007)
Cell
, vol.130
, pp. 89-100
-
-
Okamura, K.1
Hagen, J.W.2
Duan, H.3
Tyler, D.M.4
Lai, E.C.5
-
7
-
-
33846945735
-
Processing of intronic microRNAs
-
Kim Y.K., Kim V.N. Processing of intronic microRNAs. EMBO J. 2007, 26:775-783.
-
(2007)
EMBO J.
, vol.26
, pp. 775-783
-
-
Kim, Y.K.1
Kim, V.N.2
-
8
-
-
33344477448
-
Genomics of microRNA
-
Kim V.N., Nam J.W. Genomics of microRNA. Trends Genet. 2006, 22:165-173.
-
(2006)
Trends Genet.
, vol.22
, pp. 165-173
-
-
Kim, V.N.1
Nam, J.W.2
-
10
-
-
4644227434
-
Trans-splicing and polyadenylation of let-7 microRNA primary transcripts
-
Bracht J., Hunter S., Eachus R., Weeks P., Pasquinelli A. Trans-splicing and polyadenylation of let-7 microRNA primary transcripts. RNA 2004, 10:1586-1594.
-
(2004)
RNA
, vol.10
, pp. 1586-1594
-
-
Bracht, J.1
Hunter, S.2
Eachus, R.3
Weeks, P.4
Pasquinelli, A.5
-
11
-
-
33645454706
-
The H19 gene: regulation and function of a non-coding RNA
-
Gabory A., Ripoche M.A., Yoshimizu T., Dandolo L. The H19 gene: regulation and function of a non-coding RNA. Cytogenet. Genome Res. 2006, 113:188-193.
-
(2006)
Cytogenet. Genome Res.
, vol.113
, pp. 188-193
-
-
Gabory, A.1
Ripoche, M.A.2
Yoshimizu, T.3
Dandolo, L.4
-
12
-
-
27544495514
-
A polycistronic microRNA cluster, miR-17-92, is overexpressed in human lung cancers and enhances cell proliferation
-
Hayashita Y., Osada H., Tatematsu Y., Yamada H., Yanagisawa K., Tomida S., Yatabe Y., Kawahara K., Sekido Y., Takahashi T. A polycistronic microRNA cluster, miR-17-92, is overexpressed in human lung cancers and enhances cell proliferation. AACR 2005, 9628-9632.
-
(2005)
AACR
, pp. 9628-9632
-
-
Hayashita, Y.1
Osada, H.2
Tatematsu, Y.3
Yamada, H.4
Yanagisawa, K.5
Tomida, S.6
Yatabe, Y.7
Kawahara, K.8
Sekido, Y.9
Takahashi, T.10
-
13
-
-
2342449399
-
Identification and characterization of a novel gene, C13orf25, as a Target for 13q31-q32 amplification in malignant lymphoma
-
Ota A., Tagawa H., Karnan S., Tsuzuki S., Karpas A., Kira S., Yoshida Y., Seto M. Identification and characterization of a novel gene, C13orf25, as a Target for 13q31-q32 amplification in malignant lymphoma. AACR 2004, 3087-3095.
-
(2004)
AACR
, pp. 3087-3095
-
-
Ota, A.1
Tagawa, H.2
Karnan, S.3
Tsuzuki, S.4
Karpas, A.5
Kira, S.6
Yoshida, Y.7
Seto, M.8
-
14
-
-
34247483919
-
An evolutionarily conserved mechanism for MicroRNA-223 expression revealed by MicroRNA gene profiling
-
Fukao T., Fukuda Y., Kiga K., Sharif J., Hino K., Enomoto Y., Kawamura A., Nakamura K., Takeuchi T., Tanabe M. An evolutionarily conserved mechanism for MicroRNA-223 expression revealed by MicroRNA gene profiling. Cell 2007, 129:617-631.
-
(2007)
Cell
, vol.129
, pp. 617-631
-
-
Fukao, T.1
Fukuda, Y.2
Kiga, K.3
Sharif, J.4
Hino, K.5
Enomoto, Y.6
Kawamura, A.7
Nakamura, K.8
Takeuchi, T.9
Tanabe, M.10
-
15
-
-
38049156025
-
An intragenic MEF2-dependent enhancer directs muscle-specific expression of microRNAs 1 and 133
-
Liu N., Williams A.H., Kim Y., McAnally J., Bezprozvannaya S., Sutherland L.B., Richardson J.A., Bassel-Duby R., Olson E.N. An intragenic MEF2-dependent enhancer directs muscle-specific expression of microRNAs 1 and 133. Proc. Natl Acad. Sci. 2007, 104:20844.
-
(2007)
Proc. Natl Acad. Sci.
, vol.104
, pp. 20844
-
-
Liu, N.1
Williams, A.H.2
Kim, Y.3
McAnally, J.4
Bezprozvannaya, S.5
Sutherland, L.B.6
Richardson, J.A.7
Bassel-Duby, R.8
Olson, E.N.9
-
17
-
-
58149279263
-
Genomic analysis of rice microRNA promoters and clusters
-
Cui X., Xu S.M., Mu D.S., Yang Z.M. Genomic analysis of rice microRNA promoters and clusters. Gene 2009, 431:61-66.
-
(2009)
Gene
, vol.431
, pp. 61-66
-
-
Cui, X.1
Xu, S.M.2
Mu, D.S.3
Yang, Z.M.4
-
18
-
-
77953705834
-
Binding of NF-kappaB p65 subunit to the promoter elements is involved in LPS-induced transactivation of miRNA genes in human biliary epithelial cells
-
Zhou R., Hu G., Gong A.Y., Chen X.M. Binding of NF-kappaB p65 subunit to the promoter elements is involved in LPS-induced transactivation of miRNA genes in human biliary epithelial cells. Nucleic Acids Res. 2010, 38:3222-3232.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 3222-3232
-
-
Zhou, R.1
Hu, G.2
Gong, A.Y.3
Chen, X.M.4
-
19
-
-
77956338502
-
Tumor-suppressive microRNA-22 inhibits the transcription of E-box-containing c-Myc target genes by silencing c-Myc binding protein
-
Xiong J., Du Q., Liang Z. Tumor-suppressive microRNA-22 inhibits the transcription of E-box-containing c-Myc target genes by silencing c-Myc binding protein. Oncogene 2010.
-
(2010)
Oncogene
-
-
Xiong, J.1
Du, Q.2
Liang, Z.3
-
20
-
-
70349276702
-
Transcription of the C. elegans let-7 microRNA is temporally regulated by one of its targets, hbl-1
-
Roush S.F., Slack F.J. Transcription of the C. elegans let-7 microRNA is temporally regulated by one of its targets, hbl-1. Dev. Biol. 2009, 334:523-534.
-
(2009)
Dev. Biol.
, vol.334
, pp. 523-534
-
-
Roush, S.F.1
Slack, F.J.2
-
21
-
-
70349624119
-
Transcription factor choice in the Hippo signaling pathway: homothorax and yorkie regulation of the microRNA bantam in the progenitor domain of the Drosophila eye imaginal disc
-
Peng H.W., Slattery M., Mann R.S. Transcription factor choice in the Hippo signaling pathway: homothorax and yorkie regulation of the microRNA bantam in the progenitor domain of the Drosophila eye imaginal disc. Genes Dev. 2009, 23:2307-2319.
-
(2009)
Genes Dev.
, vol.23
, pp. 2307-2319
-
-
Peng, H.W.1
Slattery, M.2
Mann, R.S.3
-
22
-
-
52249086717
-
Transcription factor and microRNA regulation in androgen-dependent and -independent prostate cancer cells
-
Wang G., Wang Y., Feng W., Wang X., Yang J.Y., Zhao Y., Liu Y. Transcription factor and microRNA regulation in androgen-dependent and -independent prostate cancer cells. BMC Genomics 2008, 9(Suppl. 2):S22.
-
(2008)
BMC Genomics
, vol.9
, Issue.SUPPL. 2
-
-
Wang, G.1
Wang, Y.2
Feng, W.3
Wang, X.4
Yang, J.Y.5
Zhao, Y.6
Liu, Y.7
-
23
-
-
51949108357
-
The FLYWCH transcription factors FLH-1, FLH-2, and FLH-3 repress embryonic expression of microRNA genes in C. elegans
-
Ow M.C., Martinez N.J., Olsen P.H., Silverman H.S., Barrasa M.I., Conradt B., Walhout A.J., Ambros V. The FLYWCH transcription factors FLH-1, FLH-2, and FLH-3 repress embryonic expression of microRNA genes in C. elegans. Genes Dev. 2008, 22:2520-2534.
-
(2008)
Genes Dev.
, vol.22
, pp. 2520-2534
-
-
Ow, M.C.1
Martinez, N.J.2
Olsen, P.H.3
Silverman, H.S.4
Barrasa, M.I.5
Conradt, B.6
Walhout, A.J.7
Ambros, V.8
-
24
-
-
33748132234
-
MicroRNA promoter element discovery in Arabidopsis
-
Megraw M., Baev V., Rusinov V., Jensen S.T., Kalantidis K., Hatzigeorgiou A.G. MicroRNA promoter element discovery in Arabidopsis. RNA 2006, 12:1612-1619.
-
(2006)
RNA
, vol.12
, pp. 1612-1619
-
-
Megraw, M.1
Baev, V.2
Rusinov, V.3
Jensen, S.T.4
Kalantidis, K.5
Hatzigeorgiou, A.G.6
-
25
-
-
60149084560
-
MicroRNAs and cancer: short RNAs go a long way
-
Ventura A., Jacks T. MicroRNAs and cancer: short RNAs go a long way. Cell 2009, 136:586-591.
-
(2009)
Cell
, vol.136
, pp. 586-591
-
-
Ventura, A.1
Jacks, T.2
-
26
-
-
35948967593
-
Silencing a cotton bollworm P450 monooxygenase gene by plant-mediated RNAi impairs larval tolerance of gossypol
-
Mao Y.B., Cai W.J., Wang J.W., Hong G.J., Tao X.Y., Wang L.J., Huang Y.P., Chen X.Y. Silencing a cotton bollworm P450 monooxygenase gene by plant-mediated RNAi impairs larval tolerance of gossypol. Nat. Biotechnol. 2007, 25:1307-1313.
-
(2007)
Nat. Biotechnol.
, vol.25
, pp. 1307-1313
-
-
Mao, Y.B.1
Cai, W.J.2
Wang, J.W.3
Hong, G.J.4
Tao, X.Y.5
Wang, L.J.6
Huang, Y.P.7
Chen, X.Y.8
-
27
-
-
46449123335
-
Transcription factor and microRNA motif discovery: the Amadeus platform and a compendium of metazoan target sets
-
Linhart C., Halperin Y., Shamir R. Transcription factor and microRNA motif discovery: the Amadeus platform and a compendium of metazoan target sets. Genome Res. 2008, 18:1180-1189.
-
(2008)
Genome Res.
, vol.18
, pp. 1180-1189
-
-
Linhart, C.1
Halperin, Y.2
Shamir, R.3
-
29
-
-
0034612276
-
Use of double-stranded RNA interference in Drosophila cell lines to dissect signal transduction pathways
-
Clemens J.C., Worby C.A., Simonson-Leff N., Muda M., Maehama T., Hemmings B.A., Dixon J.E. Use of double-stranded RNA interference in Drosophila cell lines to dissect signal transduction pathways. Proc. Natl Acad. Sci. USA 2000, 97:6499-6503.
-
(2000)
Proc. Natl Acad. Sci. USA
, vol.97
, pp. 6499-6503
-
-
Clemens, J.C.1
Worby, C.A.2
Simonson-Leff, N.3
Muda, M.4
Maehama, T.5
Hemmings, B.A.6
Dixon, J.E.7
-
30
-
-
0035860090
-
RNA interference of gene expression (RNAi) in cultured Drosophila cells
-
Worby C.A., Simonson-Leff N., Dixon J.E. RNA interference of gene expression (RNAi) in cultured Drosophila cells. Science's STKE 2001.
-
(2001)
Science's STKE
-
-
Worby, C.A.1
Simonson-Leff, N.2
Dixon, J.E.3
-
31
-
-
0346670261
-
Dissecting mitosis by RNAi in Drosophila tissue culture cells
-
Maiato H., Sunkel C.E., Earnshaw W.C. Dissecting mitosis by RNAi in Drosophila tissue culture cells. Biol. Proced. Online 2003, 5:153-161.
-
(2003)
Biol. Proced. Online
, vol.5
, pp. 153-161
-
-
Maiato, H.1
Sunkel, C.E.2
Earnshaw, W.C.3
-
32
-
-
0001770214
-
Mapping DNA target sites of chromatin-associated proteins by formaldehyde cross-linking in Drosophila embryos
-
Oxford University Press, Oxford, United Kingdom
-
Cavalli G., Orlando V., Paro R. Mapping DNA target sites of chromatin-associated proteins by formaldehyde cross-linking in Drosophila embryos. Chromosome Structural Analysis: A Practical Approach 1999, 20-30. Oxford University Press, Oxford, United Kingdom.
-
(1999)
Chromosome Structural Analysis: A Practical Approach
, pp. 20-30
-
-
Cavalli, G.1
Orlando, V.2
Paro, R.3
-
33
-
-
0036190875
-
-
Oxford Univ Press
-
Messeguer X., Escudero R., Farre D., Nunez O., Martinez J., Alba M.M. PROMO: Detection of Known Transcription Regulatory Elements Using Species-Tailored Searches 2002, 333-334. Oxford Univ Press.
-
(2002)
PROMO: Detection of Known Transcription Regulatory Elements Using Species-Tailored Searches
, pp. 333-334
-
-
Messeguer, X.1
Escudero, R.2
Farre, D.3
Nunez, O.4
Martinez, J.5
Alba, M.M.6
-
34
-
-
0042622245
-
Identification of patterns in biological sequences at the ALGGEN server: PROMO and MALGEN
-
Farre D., Roset R., Huerta M., Adsuara J.E., Rosello L., Alba M.M., Messeguer X. Identification of patterns in biological sequences at the ALGGEN server: PROMO and MALGEN. Nucleic Acids Res. 2003, 31:3651-3653.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3651-3653
-
-
Farre, D.1
Roset, R.2
Huerta, M.3
Adsuara, J.E.4
Rosello, L.5
Alba, M.M.6
Messeguer, X.7
-
35
-
-
34548381748
-
"Myc'ed Messages": Myc induces transcription of E2F1 while inhibiting its translation via a microRNA polycistron
-
Coller H.A., Forman J.J., Legesse-Miller A. "Myc'ed Messages": Myc induces transcription of E2F1 while inhibiting its translation via a microRNA polycistron. PLoS Genet. 2007, 3:e146.
-
(2007)
PLoS Genet.
, vol.3
-
-
Coller, H.A.1
Forman, J.J.2
Legesse-Miller, A.3
-
36
-
-
37549008310
-
Widespread microRNA repression by Myc contributes to tumorigenesis
-
Chang T.C., Yu D., Lee Y.S., Wentzel E.A., Arking D.E., West K.M., Dang C.V., Thomas-Tikhonenko A., Mendell J.T. Widespread microRNA repression by Myc contributes to tumorigenesis. Nat. Genet. 2007, 40:43-50.
-
(2007)
Nat. Genet.
, vol.40
, pp. 43-50
-
-
Chang, T.C.1
Yu, D.2
Lee, Y.S.3
Wentzel, E.A.4
Arking, D.E.5
West, K.M.6
Dang, C.V.7
Thomas-Tikhonenko, A.8
Mendell, J.T.9
-
37
-
-
77949621355
-
MiRBase: microRNA sequences and annotation
-
Chapter 12, Unit 12 19 11-10
-
Griffiths-Jones S. miRBase: microRNA sequences and annotation. Curr Protoc Bioinformatics 2010, Chapter 12, Unit 12 19 11-10.
-
(2010)
Curr Protoc Bioinformatics
-
-
Griffiths-Jones, S.1
-
38
-
-
65449183132
-
Features of mammalian microRNA promoters emerge from polymerase II chromatin immunoprecipitation data
-
Corcoran D.L., Pandit K.V., Gordon B., Bhattacharjee A., Kaminski N., Benos P.V. Features of mammalian microRNA promoters emerge from polymerase II chromatin immunoprecipitation data. PLoS ONE 2009, 4:e5279.
-
(2009)
PLoS ONE
, vol.4
-
-
Corcoran, D.L.1
Pandit, K.V.2
Gordon, B.3
Bhattacharjee, A.4
Kaminski, N.5
Benos, P.V.6
-
39
-
-
56549129538
-
Chromatin structure analyses identify miRNA promoters
-
Ozsolak F., Poling L.L., Wang Z.X., Liu H., Liu X.S., Roeder R.G., Zhang X.M., Song J.S., Fisher D.E. Chromatin structure analyses identify miRNA promoters. Genes Dev. 2008, 22:3172-3183.
-
(2008)
Genes Dev.
, vol.22
, pp. 3172-3183
-
-
Ozsolak, F.1
Poling, L.L.2
Wang, Z.X.3
Liu, H.4
Liu, X.S.5
Roeder, R.G.6
Zhang, X.M.7
Song, J.S.8
Fisher, D.E.9
-
40
-
-
48449084118
-
Connecting microRNA genes to the core transcriptional regulatory circuitry of embryonic stem cells
-
Marson A., Levine S.S., Cole M.F., Frampton G.M., Brambrink T., Johnstone S., Guenther M.G., Johnston W.K., Wernig M., Newman J., Calabrese J.M., Dennis L.M., Volkert T.L., Gupta S., Love J., Hannett N., Sharp P.A., Bartel D.P., Jaenisch R., Young R.A. Connecting microRNA genes to the core transcriptional regulatory circuitry of embryonic stem cells. Cell 2008, 134:521-533.
-
(2008)
Cell
, vol.134
, pp. 521-533
-
-
Marson, A.1
Levine, S.S.2
Cole, M.F.3
Frampton, G.M.4
Brambrink, T.5
Johnstone, S.6
Guenther, M.G.7
Johnston, W.K.8
Wernig, M.9
Newman, J.10
Calabrese, J.M.11
Dennis, L.M.12
Volkert, T.L.13
Gupta, S.14
Love, J.15
Hannett, N.16
Sharp, P.A.17
Bartel, D.P.18
Jaenisch, R.19
Young, R.A.20
more..
-
41
-
-
62549120015
-
Genome-wide identification of targets of the drosha-pasha/DGCR8 complex
-
Kadener S., Rodriguez J., Abruzzi K.C., Khodor Y.L., Sugino K., Marr M.T., Nelson S., Rosbash M. Genome-wide identification of targets of the drosha-pasha/DGCR8 complex. RNA 2009, 15:537-545.
-
(2009)
RNA
, vol.15
, pp. 537-545
-
-
Kadener, S.1
Rodriguez, J.2
Abruzzi, K.C.3
Khodor, Y.L.4
Sugino, K.5
Marr, M.T.6
Nelson, S.7
Rosbash, M.8
-
42
-
-
51349103700
-
Primary microRNA transcripts are processed co-transcriptionally
-
Morlando M., Ballarino M., Gromak N., Pagano F., Bozzoni I., Proudfoot N.J. Primary microRNA transcripts are processed co-transcriptionally. Nat. Struct. Mol. Biol. 2008, 15:902.
-
(2008)
Nat. Struct. Mol. Biol.
, vol.15
, pp. 902
-
-
Morlando, M.1
Ballarino, M.2
Gromak, N.3
Pagano, F.4
Bozzoni, I.5
Proudfoot, N.J.6
-
43
-
-
8144225486
-
MicroRNA genes are transcribed by RNA polymerase II
-
Lee Y., Kim M., Han J., Yeom K.H., Lee S., Baek S.H., Kim V.N. MicroRNA genes are transcribed by RNA polymerase II. EMBO J. 2004, 23:4051-4060.
-
(2004)
EMBO J.
, vol.23
, pp. 4051-4060
-
-
Lee, Y.1
Kim, M.2
Han, J.3
Yeom, K.H.4
Lee, S.5
Baek, S.H.6
Kim, V.N.7
-
45
-
-
67249136441
-
C19MC microRNAs are processed from introns of large Pol-II, non-protein-coding transcripts
-
gkp205
-
Bortolin-Cavaille M.-L., Dance M., Weber M., Cavaille J. C19MC microRNAs are processed from introns of large Pol-II, non-protein-coding transcripts. Nucl. Acids Res. 2009, gkp205.
-
(2009)
Nucl. Acids Res.
-
-
Bortolin-Cavaille, M.-L.1
Dance, M.2
Weber, M.3
Cavaille, J.4
|