Integration host factor (IHF) binds to the promoter region of the phtD operon involved in phaseolotoxin synthesis in P. syringae pv. phaseolicola NPS3121

BMC Microbiology

Volumn 11, Issue , 2011, Pages

  Arvizu Gámez, Jackeline Lizzeta ^a   Hernández Morales, Alejandro ^a   Pastor Palacios, Guillermo ^a   Brieba, Luis G ^a   Álvarez Morales, Ariel ^a  

^a INSTITUTO POLITÉCNICO NACIONAL   (Mexico)

Author keywords

[No Author keywords available]

Indexed keywords

INTEGRATION HOST FACTOR; PHASEOLOTOXIN; REGULATOR PROTEIN; TOXIN; UNCLASSIFIED DRUG; BACTERIAL DNA; DRUG DERIVATIVE; ORNITHINE;

ARTICLE; BACTERIAL STRAIN; BINDING SITE; CONTROLLED STUDY; GENE CONTROL; GENE EXPRESSION; GENOME; HORIZONTAL GENE TRANSFER; LOW TEMPERATURE; NONHUMAN; OPERON; PROMOTER REGION; PROTEIN BINDING; PROTEIN DNA INTERACTION; PSEUDOMONAS SYRINGAE; REGULATORY MECHANISM; SYNTHESIS; BIOSYNTHESIS; DOWN REGULATION; GENE EXPRESSION REGULATION; GENETICS; METABOLISM;

PSEUDOMONAS SYRINGAE PV. PHASEOLICOLA;

DNA, BACTERIAL; DOWN-REGULATION; GENE EXPRESSION REGULATION, BACTERIAL; INTEGRATION HOST FACTORS; OPERON; ORNITHINE; PROMOTER REGIONS, GENETIC; PROTEIN BINDING; PSEUDOMONAS SYRINGAE;

EID: 79955492237     PISSN: 14712180     EISSN: 14712180     Source Type: Journal    
DOI: 10.1186/1471-2180-11-90     Document Type: Article

References (53)

1. Bean halo-blight toxin. RE Mitchell, Nature 1976 260 75 76 10.1038/260075a0
2. Isolation and structure of a chlorosis inducing toxin of Pseudomonas phaseolicola. RE Mitchell, Phytochemistry 1976 15 1941 1947 10.1016/S0031- 9422(00)88851-2
3. Involvement of phaseolotoxin in Halo blight of beans. RE Mitchell RL Bieleski, Plant Physiol 1977 60 723 729 10.1104/pp.60.5.723 16660172
4. The inhibition of ornithine transcarbamoylase from Escherichia coli W by phaseolotoxin. MD Templeton PA Sullivan MG Shepherd, Biochem J 1984 224 379 388 6393952 (Pubitemid 15168430)
5. Phaseolotoxin: chlorosis, ornithine accumulation and inhibition of ornithine carbamoyltransferase in different plants. AR Ferguson JS Johnston, Physiol Plant Pathol 1980 16 269 275 10.1016/0048-4059(80)90041-7
6. The relation of temperature to common and halo blight of beans. RW Goss, Phytopathology 1970 30 258 264
7. Phaseolotoxin production by Pseudomonas syringae pv. phaseolicola: the influence of temperature. J Nüske W Fritsche, J Basic Microbiol 1989 29 441 447 10.1002/jobm.3620290713 2600779 (Pubitemid 20047457)
8. Transcriptional profile of Pseudomonas syringae pv phaseolicola NPS3121 in response to tissue extracts from a susceptible Phaseolus vulgaris L. cultivar. A Hernández-Morales S De la Torre-Zavala E Ibarra-Laclette JL Hernández-Flores AE Jofre-Garfias A Martínez-Antonio A Álvarez Morales, BMC Microbiology 2009 9 257 10.1186/1471-2180-9-257 20003402
9. Enzymatic regulation of microbial phytoeffector biosynthesis. G Reuter, Progress in industrial microbiology 1989 27 271 281
10. Functional characterization of the gene cluster from Pseudomonas syringae pv. phaseolicola NPS3121 involved in synthesis of phaseolotoxin. S Aguilera K Lápez-Lápez Y Nieto R Garciduẽas-Pĩa G Hernández-Guzmán JL Hernández-Flores J Murillo A Álvarez-Morales, J Bacteriol 2007 189 2834 2843 10.1128/JB.01845-06 17237165 (Pubitemid 46556066)
11. Ornithine carbamoyltranferase and phaseolotoxin immunity in Pseudomonas syringae pv. phaseolicola. RC Peet NJ Panopoulos, EMBO J 1987 6 3585 3591 16453811
12. Isolation and characterization of the gene from Pseudomonas syringae pv. phaseolicola encoding the phaseolotoxin-insensitive ornithine carbamoyltransferase. G Mosqueda G Van de Broeck O Saucedo AM Bailey A Álvarez-Morales L Herrera-Estrella, Mol Gen Genet 1990 222 461 466 10.1007/BF00633857 2274044 (Pubitemid 20240181)
13. An open reading frame in the approximately 28-kb tox-argk gene cluster encodes a polypeptide with homology to fatty acid desaturases. E Hatziloukas NJ Panopoulos S Delis DE Prosen NW Schaad, Gene 1995 166 83 87 10.1016/0378- 1119(95)00569-5 8529898
14. Isolation and characterization of the gene coding for the amidinotransferase involved in the biosynthesis of phaseolotoxin in Pseudomonas syringae pv. phaseolicola. G Hernández-Guzmán A Álvarez-Morales, Mol Plant-Microbe Interact 2001 14 545 554 10.1094/MPMI.2001.14.4.545 11310742 (Pubitemid 32235586)
15. A novel L-amino acid ligase is encoded by a gene in the phaseolotoxin biosynthetic gene cluster from Pseudomonas syringae pv phaseolicola 1448A. T Arai K Kino, Biosci Biotechnol Biochem 2008 72 3048 3050 10.1271/bbb.80439 18997422
16. Role of phaseolotoxin production by Pseudomonas syringae pv. actinidae in the formation of halo lesions of kiwifruit canker disease. K Tamura M Imamura K Yoneyama Y Kohno Y Takikawa I Yamaguchi H Takahashi, Physiol Mol Plant Pathol 2002 60 207 214 10.1006/pmpp.2002.0405 (Pubitemid 34749810)
17. A strain of Pseudomonas syringae which does not belong to pathovar phaseolicola produces phaseolotoxin. C Tourte C Manceau, European J Plant Pathol 1995 101 483 490 10.1007/BF01874471
18. Phylogenetic analysis of Pseudomonas syringae pathovars suggests the horizontal gene transfer of argK and the evolutionary stability of hrp gene cluster. H Sawada F Suzuki I Matsuda N Saitou, J Mol Evol 1999 49 627 644 10.1007/PL00006584 10552044 (Pubitemid 32268719)
19. A phylogenomic study of the OCTase genes in Pseudomonas syringae pathovars: The horizontal transfer of the argK-tox cluster and the evolutionary history of OCTase genes on their genomes. H Sawada S Kanaya M Tsuda F Suzuki K Azegami N Saitou, J Mol Evol 2002 54 437 457 10.1007/s00239-001-0032-y 11956683 (Pubitemid 34271125)
20. Comparative analysis of argK-tox clusters and their flanking regions in phaseolotoxin-producing Pseudomonas syringae pathovars. H Genka T Baba M Tsuda S Kanaya H Mori T Yoshida MT Noguchi K Tsuchiya H Sawada, J Mol Evol 2006 63 401 414 10.1007/s00239-005-0271-4 16927007 (Pubitemid 44440481)
21. Global analysis of gene transcription regulation in prokaryotes. D Zhou R Yang, Cell Mol Life Sci 2006 63 2260 2290 10.1007/s00018-006-6184-6 16927028 (Pubitemid 44653039)
22. The regulation of bacterial transcription initiation. DF Browning SJW Busby, Nat Rev Microbiol 2004 2 1 9
23. Molecular analysis of thermoregulation of phaseolotoxin-resistant ornithine carbamoyltransferase (argK) from Pseudomonas syringae pv. phaseolicola. KB Rowley R Xu SS Patil, Mol Plant-Microbe Interact 2000 13 1071 1080 10.1094/MPMI.2000.13.10.1071 11043468
24. Pseudomonas syringae Phytotoxins: Mode of action, regulation and biosynthesis by peptide and polyketide synthetases. CL Bender F Alarcán-Chaidez DC Gross, Microbiol Mol Biol Rev 1999 63 266 292 10357851 (Pubitemid 29264972)
25. Pfam. http://pfam.sanger.ac.uk/
26. BPROM. http://www.softberry.com
27. Rpromoter and its mutants. J Kur N Hasan W Szybalski, Gene 1989 81 1 15 10.1016/0378-1119(89)90331-4 2553535
28. IHF and HU flexible architects of bent DNA. KK Swinger PA Rice, Curr Opin Struct Biol 2004 14 28 35 10.1016/j.sbi.2003.12.003 15102446 (Pubitemid 38249589)
29. Integration host factor is involved in transcriptional regulation of the Brucella abortus virB operon. R Sieira DJ Comerci LI Pietrasanta RA Ugalde, Mol Microbiol 2004 54 808 822 10.1111/j.1365-2958.2004.04316.x 15491369 (Pubitemid 39457300)
30. Integration host factor positively regulates virulence gene expression in Vibrio cholera. E Stonehouse G Kovacikova RK Taylor K Skorupski, J Bacteriol 2008 190 4736 4748 10.1128/JB.00089-08 18456804 (Pubitemid 351898991)
31. Growth phase-dependent variation in protein composition of Escherichia coli nucleoid. TA Azam a Iwata A Nishimura S Ueda A Ishihama, J Bacteriol 1999 181 6361 6370 10515926 (Pubitemid 29512946)
32. Integration host factor and sequences downstream of the Pseudomonas aeruginosa algD transcription start site are required for expression. DJ Wozniak, J Bacteriol 1994 176 5068 5076 8051019 (Pubitemid 24253748)
33. Structure and function of the Pseudomonas putida integration host factor. R Calb A Davidovitch S Koby H Giladi D Goldenberg H Margalit A Holtel K Timmis JM Snchez-Romero V De Lorenzo AB Oppenheim, J Bacteriol 1996 178 6319 6326 8892836 (Pubitemid 26365716)
34. Determining the DNA sequence elements required for binding integration host factor to two different target sites. LM Hales RI Gumport JF Gardner, J Bacteriol 1994 176 2999 3006 8188600 (Pubitemid 24152947)
35. Regulation by transcription factors. R Wagner, Transcription regulation in prokaryotes Oxford Press 2000 193 260
36. The bacterial regulatory protein H-NS a versatile modulator of nucleic acid structure. O Schröder R Wagner, Biol Chem 2002 383 945 960 10.1515/BC.2002.101 12222684 (Pubitemid 34874098)
37. Control of transcription by nucleoid proteins. SM McLeod RC Johnson, Curr Opin Microbiol 2001 4 152 159 10.1016/S1369-5274(00)00181-8 11282470 (Pubitemid 32294416)
38. HU and IHF, two homologous histone-like proteins of Escherichia coli, form different protein-DNA complexes with short DNA fragments. E Bonnefoy J Rouviére-Yaniv, EMBO J 1991 10 687 696 2001682 (Pubitemid 21905524)
39. The role of integration host factor in gene expression in Escherichia coli. M Freundlich N Ramani E Mathew A Sirko P Tsui, Mol Microbiol 1992 6 2557 2563 10.1111/j.1365-2958.1992.tb01432.x 1447969
40. Bacterial nucleoid-associated proteins, nucleoid structure and gene expression. SC Dillon CJ Dorman, Nat Rev Microbiol 2010 8 185 195 10.1038/nrmicro2261 20140026
41. Examining the contribution of a dA+dT element to the conformation of Escherichia coli integration host factor-DNA complexes. LM Hales RI Gumport JF Gardner, Nucleic Acids Res 1996 24 1780 1786 10.1093/nar/24.9.1780 8650000
42. The regulation of transcription initiation by integration host factor. N Goosen P Van de putte, Mol Microbiol 1995 16 1 7 10.1111/j.1365-2958.1995. tb02386.x 7651128
43. H-NS: a universal regulator for a dynamic genome. CJ Dorman, Nat Rev Microbiol 2004 2 391 400 10.1038/nrmicro883 15100692 (Pubitemid 39490118)
44. In vivo and ex vivo regulation of bacterial virulence gene expression. PA Cotter JF Miller, Curr Opin Microbio 1998 1 17 26 10.1016/S1369-5274(98)80138-0 (Pubitemid 128428038)
45. Hierarchy in the expression of the locus of enterocyte effacement genes of enteropathogenic Escherichia coli. D Friedberg T Umanski Y Fang I Rosenshine, Mol Microbiol 1999 34 941 952 10.1046/j.1365-2958.1999.01655.x 10594820 (Pubitemid 30000312)
46. Regulatory integration of horizontally-transferred genes in bacteria. CJ Dorman, Front Biosci 2009 14 4103 4112 19273337
47. Integration of horizontally transferred genes into regulatory interaction networks takes many million years. MJ Lercher C Pl, Mol Biol Evol 2008 25 559 567 10.1093/molbev/msm283 18158322 (Pubitemid 351301911)
48. Molecular cloning: a laboratory manual. J Sambrook EF Fritsch T Maniatis, Cold Spring Harbor. New York 2 1989
49. A simple and rapid method for the preparation of gram negative bacterial genomic DNA. WP Chen TT Kuo, Nucleic Acids Res 1993 21 2260 10.1093/nar/21.9. 2260 8502576
50. Multiple copies of a DNA sequence from Pseudomonas syringae pathovar phaseolicola abolish thermoregulation of phaseolotoxin production. KB Rowley DE Clements M Mnadel T Humphrey SS Patil, Mol Microbiol 1993 8 625 635 10.1111/j.1365-2958.1993.tb01606.x 8326870 (Pubitemid 23156456)
51. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. MM Bradford, Anal Biochem 1976 72 248 254 10.1016/0003-2697(76)90527-3 942051
52. Identification and analysis of all components of a gel retardation assay by combination with immunoblotting. S Demczuk M Harbers B Vennstrom, Proc Natl Acad Sci USA 1993 90 2574 2578 10.1073/pnas.90.7.2574 8385336 (Pubitemid 23113458)
53. Whole genome sequence analysis of Pseudomonas syringae pv phaseolicola 1448A reveals divergence among pathovars in genes involved in virulence and transposition. V Joardar M Lindeberg RW Jackson J Selengut R Dodson LM Brinkac SC Daugherty R DeBoy AS Durkin MG Giglio R Madupu WC Nelson MJ Rasovitz S Sullivan J Crabtree T Creasy T Davidsen DH Haft N Zafar L Zhou R Halpin T Holley H Khouri T Feldblyum O White CM Fraser AK Chatterjee S Cartinhour DJ Schneider J Mansfield A Collmer R Buell, J Bacteriol 2005 187 6488 6498 10.1128/JB.187.18.6488-6498.2005 16159782 (Pubitemid 41318408)