Cell signals, cell contacts, and the organization of yeast communities

Eukaryotic Cell

Volumn 10, Issue 4, 2011, Pages 466-473

  Honigberg, Saul M ^a  

^a UNIVERSITY OF MISSOURI KANSAS CITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMMONIA; REACTIVE OXYGEN METABOLITE; SACCHAROMYCES CEREVISIAE PROTEIN;

APOPTOSIS; ARTICLE; CELL ADHESION; CELL COMMUNICATION; CYTOLOGY; EXTRACELLULAR MATRIX; GENE EXPRESSION REGULATION; GENETICS; HUMAN; METABOLISM; PHYSIOLOGY; SACCHAROMYCES CEREVISIAE; SIGNAL TRANSDUCTION;

AMMONIA; APOPTOSIS; CELL ADHESION; CELL COMMUNICATION; EXTRACELLULAR MATRIX; GENE EXPRESSION REGULATION, FUNGAL; HUMANS; REACTIVE OXYGEN SPECIES; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; SIGNAL TRANSDUCTION;

SACCHAROMYCES CEREVISIAE;

EID: 79955415767     PISSN: 15359778     EISSN: None     Source Type: Journal    
DOI: 10.1128/EC.00313-10     Document Type: Article

References (73)

1. Barrales, R. R., J. Jimenez, and J. I. Ibeas. 2008. Identification of novel activation mechanisms for FLO11 regulation in Saccharomyces cerevisiae. Genetics 178:145-156.
2. Bastidas, R. J., and J. Heitman. 2009. Trimorphic stepping stones pave the way to fungal virulence. Proc. Natl. Acad. Sci. U. S. A. 106:351-352.
3. Beauvais, A., C. Loussert, M. C. Prevost, K. Verstrepen, and J. P. Latge. 2009. Characterization of a biofilm-like extracellular matrix in FLO1-ex-pressing Saccharomyces cerevisiae cells. FEMS Yeast Res. 9:411-419.
4. Bedard, K., and K. H. Krause. 2007. The NOX family of ROS-generating NADPH oxidases: physiology and pathophysiology. Physiol. Rev. 87:245-313.
5. Blankenship, J. R., and A. P. Mitchell. 2006. How to build a biofilm: a fungal perspective. Curr. Opin. Microbiol. 9:588-594.
6. Bumgarner, S. L., R. D. Dowell, P. Grisafi, D. K. Gifford, and G. R. Fink. 2009. Toggle involving cis-interfering noncoding RNAs controls variegated gene expression in yeast. Proc. Natl. Acad. Sci. U. S. A. 106:18321-18326.
7. Cap, M., L. Vachova, and Z. Palkova. 2009. Yeast colony survival depends on metabolic adaptation and cell differentiation rather than on stress defense. J. Biol. Chem. 284:32572-32581.
8. Cap, M., L. Vachova, and Z. Palkova. 2010. How to survive within a yeast colony?: change metabolism or cope with stress? Commun. Integr. Biol. 3:198-200.
9. Chen, H., and G. R. Fink. 2006. Feedback control of morphogenesis in fungi by aromatic alcohols. Genes Dev. 20:1150-1161.
10. Chen, H., M. Fujita, Q. Feng, J. Clardy, and G. R. Fink. 2004. Tyrosol is a quorum-sensing molecule in Candida albicans. Proc. Natl. Acad. Sci. U. S. A. 101:5048-5052.
11. Crump, J. A., and P. J. Collignon. 2000. Intravascular catheter-associated infections. Eur. J. Clin. Microbiol. Infect. Dis. 19:1-8.
12. Dengis, P. B., and P. G. Rouxhet. 1997. Surface properties of top- and bottom-fermenting yeast. Yeast 13:931-943.
13. Dohlman, H. G., and J. E. Slessareva. 2006. Pheromone signaling pathways in yeast. Sci. STKE 2006:cm6.
14. Douglas, L. J. 2003. Candida biofilms and their role in infection. Trends Microbiol. 11:30-36.
15. Fichtner, L., F. Schulze, and G. H. Braus. 2007. Differential Flo8p-depen-dent regulation of FLO1 and FLO11 for cell-cell and cell-substrate adherence of S. cerevisiae S288C. Mol. Microbiol. 66:1276-1289.
16. Fidalgo, M., R. R. Barrales, J. I. Ibeas, and J. Jimenez. 2006. Adaptive evolution by mutations in the FLO11 gene. Proc. Natl. Acad. Sci. U. S. A. 103:11228-11233.
17. Floch, M. H. 2003. Saccharomyces: is it a probiotic or a pathogen and what is the significance of an elevated anti-S. cerevisiae antibody? J. Clin. Gas-troenterol. 36:5-6.
18. Gimeno, C. J., P. O. Ljungdahl, C. A. Styles, and G. R. Fink. 1992. Unipolar cell divisions in the yeast S. cerevisiae lead to filamentous growth: regulation by starvation and RAS. Cell 68:1077-1090.
19. Goossens, K., and R. Willaert. 2010. Flocculation protein structure and cell-cell adhesion mechanism in Saccharomyces cerevisiae. Biotechnol. Lett. 32:1571-1585.
20. Govender, P., M. Bester, and F. F. Bauer. 2010. FLO gene-dependent phe-notypes in industrial wine yeast strains. Appl. Microbiol. Biotechnol. 86:931-945.
21. Govender, P., J. L. Domingo, M. C. Bester, I. S. Pretorius, and F. F. Bauer. 2008. Controlled expression of the dominant flocculation genes FLO1, FLO5, and FLO11 in Saccharomyces cerevisiae. Appl. Environ. Microbiol. 74:6041-6052.
22. Granek, J. A., and P. M. Magwene. 2010. Environmental and genetic determinants of colony morphology in yeast. PLoS Genet. 6:e1000823.
23. Halme, A., S. Bumgarner, C. Styles, and G. R. Fink. 2004. Genetic and epigenetic regulation of the FLO gene family generates cell-surface variation in yeast. Cell 116:405-415.
24. Herskowitz, I. 1995. MAP kinase pathways in yeast: for mating and more. Cell 80:187-197.
25. Hogan, D. A. 2006. Talking to themselves: autoregulation and quorum sensing in fungi. Eukaryot. Cell 5:613-619.
26. Hornby, J. M., et al. 2001. Quorum sensing in the dimorphic fungus Candida albicans is mediated by farnesol. Appl. Environ. Microbiol. 67:2982-2992.
27. Kang, S., and H. Choi. 2005. Effect of surface hydrophobicity on the adhesion of S. cerevisiae onto modified surfaces by poly(styrene-ran-sulfonic acid) random copolymers. Colloids Surf. B Biointerfaces 46:70-77.
28. Karunanithi, S., et al. 2010. Shedding of the mucin-like flocculin Flo11p reveals a new aspect of fungal adhesion regulation. Curr. Biol. 20:1389-1395.
29. Kruppa, M. 2009. Quorum sensing and Candida albicans. Mycoses 52:1-10.
30. Kuhn, D. M., J. Chandra, P. K. Mukherjee, and M. A. Ghannoum. 2002. Comparison of biofilms formed by Candida albicans and Candida parapsi-losis on bioprosthetic surfaces. Infect. Immun. 70:878-888.
31. Kurjan, J. 1993. The pheromone response pathway in Saccharomyces cerevi-siae. Annu. Rev. Genet. 27:147-179.
32. Li, F., and S. P. Palecek. 2005. Identification of Candida albicans genes that induce Saccharomyces cerevisiae cell adhesion and morphogenesis. Biotech-nol. Prog. 21:1601-1609.
33. Liu, H., C. A. Styles, and G. R. Fink. 1996. Saccharomyces cerevisiae S288C has a mutation in FLO8, a gene required for filamentous growth. Genetics 144:967-978.
34. Lo, W. S., and A. M. Dranginis. 1998. The cell surface flocculin Flo11 is required for pseudohyphae formation and invasion by Saccharomyces cerevi-siae. Mol. Biol. Cell 9:161-171.
35. Meunier, J. R., and M. Choder. 1999. Saccharomyces cerevisiae colony growth and ageing: biphasic growth accompanied by changes in gene expression. Yeast 15:1159-1169.
36. Mortimer, R. K., and J. R. Johnston. 1986. Genealogy of principal strains of the yeast genetic stock center. Genetics 113:35-43.
37. Ng, W. L., and B. L. Bassler. 2009. Bacterial quorum-sensing network architectures. Annu. Rev. Genet. 43:197-222.
38. Novick, R. P., and E. Geisinger. 2008. Quorum sensing in staphylococci. Annu. Rev. Genet. 42:541-564.
39. Oh, K. B., H. Miyazawa, T. Naito, and H. Matsuoka. 2001. Purification and characterization of an autoregulatory substance capable of regulating the morphological transition in Candida albicans. Proc. Natl. Acad. Sci. U. S. A. 98:4664-4668.
40. Palkova, Z., et al. 2002. Ammonia pulses and metabolic oscillations guide yeast colony development. Mol. Biol. Cell 13:3901-3914.
41. Palkova, Z., et al. 1997. Ammonia mediates communication between yeast colonies. Nature 390:532-536.
42. Palkova, Z., and L. Vachova. 2003. Ammonia signaling in yeast colony formation. Int. Rev. Cytol. 225:229-272.
43. Perlroth, J., B. Choi, and B. Spellberg. 2007. Nosocomial fungal infections: epidemiology, diagnosis, and treatment. Med. Mycol. 45:321-346.
44. Pfaller, M. A., and D. J. Diekema. 2007. Epidemiology of invasive candidi-asis: a persistent public health problem. Clin. Microbiol. Rev. 20:133-163.
45. Piarroux, R., L. Millon, K. Bardonnet, O. Vagner, and H. Koenig. 1999. Are live saccharomyces yeasts harmful to patients? Lancet 353:1851-1852.
46. Piccirillo, S., and S. M. Honigberg. 2010. Sporulation patterning and invasive growth in wild and domesticated yeast colonies. Res.Microbiol. 161:390-398.
47. Piccirillo, S., and S. M. Honigberg. Yeast colony embedding method. J. Vis. Exp., in press.
48. Piccirillo, S., M. G. White, J. C. Murphy, D. J. Law, and S. M. Honigberg. 2010. The Rim101p/PacC pathway and alkaline pH regulate pattern formation in yeast colonies. Genetics 184:707-716.
49. Purevdorj-Gage, B., M. E. Orr, P. Stoodley, K. B. Sheehan, and L. E. Hyman. 2007. The role of FLO11 in Saccharomyces cerevisiae biofilm development in a laboratory based flow-cell system. FEMS Yeast Res. 7:372-379.
50. Ramage, G., S. P. Saville, B. L. Wickes, and J. L. Lopez-Ribot. 2002. Inhibition of Candida albicans biofilm formation by farnesol, a quorum-sensing molecule. Appl. Environ. Microbiol. 68:5459-5463.
51. Reynolds, T. B., and G. R. Fink. 2001. Bakers' yeast, a model for fungal biofilm formation. Science 291:878-881.
52. Reynolds, T. B., A. Jansen, X. Peng, and G. R. Fink. 2008. Mat formation in Saccharomyces cerevisiae requires nutrient and pH gradients. Eukaryot. Cell 7:122-130.
53. Roberts, R. L., and G. R. Fink. 1994. Elements of a single MAP kinase cascade in Saccharomyces cerevisiae mediate two developmental programs in the same cell type: mating and invasive growth. Genes Dev. 8:2974-2985.
54. Smukalla, S., et al. 2008. FLO1 is a variable green beard gene that drives biofilm-like cooperation in budding yeast. Cell 135:726-737.
55. Sprague, G. F., and S. C. Winans. 2006. Eukaryotes learn how to count: quorum sensing by yeast. Genes Dev. 20:1045-1049.
56. St'ovicek, V., L. Vachova, M. Kuthan, and Z. Palkova. 2010. General factors important for the formation of structured biofilm-like yeast colonies. Fungal Genet. Biol. 47:1012-1022.
57. Straight, P. D., and R. Kolter. 2009. Interspecies chemical communication in bacterial development. Annu. Rev. Microbiol. 63:99-118.
58. Stratford, M. 2006. Food and beverage spoilage yeasts, p. 335-380. In A. Querol and G. Fleet (ed.), Yeasts in food and beverages. Springer-Verlag, Berlin, Germany.
59. Vachova, L., et al. 2009. Architecture of developing multicellular yeast colony: spatio-temporal expression of Ato1p ammonium exporter. Environ. Microbiol. 11:1866-1877.
60. Vachova, L., et al. 2004. Sok2p transcription factor is involved in adaptive program relevant for long term survival of Saccharomyces cerevisiae colonies. J. Biol. Chem. 279:37973-37981.
61. Vachova, L., H. Kucerova, F. Devaux, M. Ulehlova, and Z. Palkova. 2009. Metabolic diversification of cells during the development of yeast colonies. Environ. Microbiol. 11:494-504.
62. Vachova, L., and Z. Palkova. 2005. Physiological regulation of yeast cell death in multicellular colonies is triggered by ammonia. J. Cell Biol. 169: 711-717.
63. Van Mulders, S. E., et al. 2009. Phenotypic diversity of Flo protein family-mediated adhesion in Saccharomyces cerevisiae. FEMS Yeast Res. 9:178-190.
64. Verstrepen, K. J., and G. R. Fink. 2009. Genetic and epigenetic mechanisms underlying cell-surface variability in protozoa and fungi. Annu.Rev. Genet. 43:1-24.
65. Verstrepen, K. J., A. Jansen, F. Lewitter, and G. R. Fink. 2005. Intragenic tandem repeats generate functional variability. Nat. Genet. 37:986-990.
66. Vopalenska, I., M. Hulkova, B. Janderova, and Z. Palkova. 2005. The morphology of Saccharomyces cerevisiae colonies is affected by cell adhesion and the budding pattern. Res. Microbiol. 156:921-931.
67. Vopalenska, I., V. St'ovicek, B. Janderova, L. Vachova, and Z. Palkova. 2010. Role of distinct dimorphic transitions in territory colonizing and formation of yeast colony architecture. Environ. Microbiol. 12:264-277.
68. Walker, J. J., and N. R. Pace. 2007. Endolithic microbial ecosystems. Annu. Rev. Microbiol. 61:331-347.
69. White, M. G., et al. 2011. Flo11p adhesin required for meiotic differentiation in S. cerevisiae minicolonies grown on plastic surfaces. FEMS Yeast Res. 11:223-232.
70. Wilson, D., et al. 2009. Identifying infection-associated genes of Candida albicans in the postgenomic era. FEMS Yeast Res. 9:688-700.
71. Wolf, J. J., et al. 2010. Feed-forward regulation of a cell fate determinant by an RNA-binding protein generates asymmetry in yeast. Genetics 185:513-522.
72. Wong, H. L., and K. Shimamoto. 2009. Sending ROS on a bullet train. Sci. Signal. 2:pe60.
73. Zara, G., S. Zara, C. Pinna, S. Marceddu, and M. Budroni. 2009. FLO11 gene length and transcriptional level affect biofilm-forming ability of wild flor strains of Saccharomyces cerevisiae. Microbiology 155:3838-3846.